Search to UniGene2 database
Query= 20040204C-002677 (20040204C-002677) 20040204C-002677
(840 letters)
Database: UniGene(Bt+Hs+Ssc+Mm)
238,354 sequences; 272,110,533 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gnl|UG|Hs#S3619164 Homo sapiens NADPH oxidase-related, C2 domain... 426 e-118
Alignment gnl|UG|Mm#S9108695 Mus musculus synaptotagmin-like 1 (Sytl1), mR... 315 2e-84
Alignment gnl|UG|Mm#S9707824 Mus musculus SEC14-like 1 (S. cerevisiae) (Se... 42 0.046
Alignment gnl|UG|Hs#S17091078 Homo sapiens similar to interleukin 9 recept... 40 0.18
Alignment gnl|UG|Hs#S16886785 Homo sapiens cDNA FLJ43931 fis, clone TESTI4... 40 0.18
Alignment gnl|UG|Hs#S14863436 Homo sapiens interleukin 9 receptor (IL9R), ... 40 0.18
Alignment gnl|UG|Hs#S2004529 EST381912 MAGE resequences, MAGK Homo sapiens... 40 0.18
Alignment gnl|UG|Hs#S4620331 Homo sapiens cDNA FLJ33753 fis, clone BRCAN20... 40 0.18
Alignment gnl|UG|Mm#S14788830 Mus musculus cDNA sequence BC039632 (BC03963... 40 0.18
Alignment gnl|UG|Mm#S10828694 Mus musculus hypothetical protein C630025L14... 40 0.18
>gnl|UG|Hs#S3619164 Homo sapiens NADPH oxidase-related, C2
domain-containing protein (JFC1), mRNA /cds=(168,1820)
/gb=NM_032872 /gi=14249613 /ug=Hs.25895 /len=1898
Length = 1898
Score = 426 bits (215), Expect = e-118
Identities = 484/571 (84%), Gaps = 2/571 (0%)
Strand = Plus / Plus
Query: 18 tccctgaaactcagctgccaggggagccggggctgccctacgaagccgtcccctccatac 77
|||||||||||| |||||||||||||| || || || | ||||| |||| | ||||||
Sbjct: 59 tccctgaaactcggctgccaggggagctggagccacc-tgcgaaggtgtcctc-ccatac 116
Query: 78 tggacccctacagggagccacgtgtgcccagcgggggcaccgccccagctgatgccccag 137
|||||||||||||| ||| |||||||||||| ||||||| |||||||||||||||||||
Sbjct: 117 tggacccctacaggaagctccgtgtgcccagctggggcacagccccagctgatgccccag 176
Query: 138 aggggccacccatctcaagaggggctccgggtcctgcctggcctcctcatggcacatgag 197
|||||||||||||| ||||||||||| ||| ||||| ||||| |||||| |||| |
Sbjct: 177 aggggccacccatcgcaagaggggctttgggctctgccctccctccccatggcgcatggg 236
Query: 198 ccagagcctgaggctgatgggttactggacctcagcttcctgacggaggaggaacaggaa 257
||| |||||||| |||| || | ||||||||||||||||||| |||||||| |||||
Sbjct: 237 ccaaagcctgagactgaaggactgttggacctcagcttcctgacagaggaggagcaggag 296
Query: 258 gccattgctgaggtcctgaagcgagatgcccacctacggcagctggaggagggacgggtc 317
|||||||||| ||||| | |||||||||| ||| || |||||||||||||| ||||||
Sbjct: 297 gccattgctggcgtcctccaacgagatgcccgcctgcgccagctggaggaggggcgggtc 356
Query: 318 agaaagctccgggcatcactggaagaccctgggcagctgaagatcctaacaggggactgg 377
|| ||||||||||| ||| ||| |||||||||||||||||||||||| ||||||||||||
Sbjct: 357 agcaagctccgggcctcagtggcagaccctgggcagctgaagatcctgacaggggactgg 416
Query: 378 ttccaggaagcacgctcccagaggcaccaccacacccacctgggttctgacctagtccga 437
||||||||||||||||||||| |||||||| | ||||| | || |||||||| ||||||
Sbjct: 417 ttccaggaagcacgctcccagcggcaccacaatgcccacttcggctctgaccttgtccga 476
Query: 438 gcctccatccgcagaaagaagggctccaggggagaccaggctcggggcagcaatggggag 497
|| || || ||||| |||||| || |||||||||||||||||| ||| | | |||||
Sbjct: 477 gcgtctatgcgcaggaagaagagcaccaggggagaccaggctccaggccacgacagggag 536
Query: 498 gctgaggctgctgggaaagagaccgaagaggcgctggagcccaggctccccatagacaag 557
||||||||||||| |||||||| ||||||| || |||||||||||| |||| || ||
Sbjct: 537 gctgaggctgctgtgaaagagaaggaagaggggccagagcccaggctcaccattgatgag 596
Query: 558 gccccccaagagagtctcagcgaggctgagg 588
||||| || ||||| ||||| ||| ||||||
Sbjct: 597 gcccctcaggagaggctcagggagactgagg 627
Score = 73.8 bits (37), Expect = 1e-11
Identities = 119/145 (82%), Gaps = 1/145 (0%)
Strand = Plus / Plus
Query: 696 gaggaggcggacccggagccaaagccgccgtcgggggcggaggaggagccgcaacccagg 755
|||||||| |||||||||| |||| ||||||||| ||| ||||||||| ||| |
Sbjct: 696 gaggaggctgacccggagctggagcccgcgtcggggggagagcaggagccgcggccccag 755
Query: 756 cctgctcagacccaggaggcgtccgaaatcctgggagaatggggaggaggccccggggcc 815
| || |||||| ||| |||||| | ||||||| |||||||||||||||||||||||||
Sbjct: 756 caagcccagaccaaggccgcgtcccagatcctgg-agaatggggaggaggccccggggcc 814
Query: 816 tgacccctcactggaccgtatgctc 840
|||||||| || ||||| ||||||
Sbjct: 815 cgacccctctctcgaccgcatgctc 839
>gnl|UG|Mm#S9108695 Mus musculus synaptotagmin-like 1 (Sytl1), mRNA
/cds=(119,1822) /gb=NM_031393 /gi=13878228 /ug=Mm.25660
/len=1824
Length = 1824
Score = 315 bits (159), Expect = 2e-84
Identities = 372/443 (83%)
Strand = Plus / Plus
Query: 75 tactggacccctacagggagccacgtgtgcccagcgggggcaccgccccagctgatgccc 134
|||||||||| |||||| ||| || | |||||||| ||||||| |||||||||||||||
Sbjct: 65 tactggacccttacaggaagctacatatgcccagctggggcacaaccccagctgatgccc 124
Query: 135 cagaggggccacccatctcaagaggggctccgggtcctgcctggcctcctcatggcacat 194
||||| |||||||||||||| ||| |||| ||| |||||| ||||| ||||||||||
Sbjct: 125 cagagaggccacccatctcaggagaggctttgggccctgccctccctccccatggcacat 184
Query: 195 gagccagagcctgaggctgatgggttactggacctcagcttcctgacggaggaggaacag 254
| |||| |||| | ||| ||||| |||||||||||||||||||| ||||||||||||
Sbjct: 185 ggaccaggatctgaagttgaggggttgctggacctcagcttcctgacagaggaggaacag 244
Query: 255 gaagccattgctgaggtcctgaagcgagatgcccacctacggcagctggaggagggacgg 314
|| ||||| |||| ||||| || |||||||||||||| || ||||||||||| || |||
Sbjct: 245 gaggccatctctgatgtcctcaaacgagatgcccacctgcgccagctggaggaagggcgg 304
Query: 315 gtcagaaagctccgggcatcactggaagaccctgggcagctgaagatcctaacaggggac 374
||||| ||||||||||| || ||||||||||| |||||||||||||||| |||||||||
Sbjct: 305 gtcagcaagctccgggcctccctggaagacccctggcagctgaagatcctgacaggggac 364
Query: 375 tggttccaggaagcacgctcccagaggcaccaccacacccacctgggttctgacctagtc 434
|||||||| ||||| || |||||||||||||| ||| |||| | ||||||||||| |||
Sbjct: 365 tggttccaagaagcgcgttcccagaggcaccatcacgcccattttggttctgaccttgtc 424
Query: 435 cgagcctccatccgcagaaagaagggctccaggggagaccaggctcggggcagcaatggg 494
|| || || ||||| || |||||| || | | ||| |||||||||| ||| || ||||
Sbjct: 425 cgggcttctatccgaaggaagaagagcccaaagggggaccaggctctggggagtgatggt 484
Query: 495 gaggctgaggctgctgggaaaga 517
|| || |||||||||||| ||||
Sbjct: 485 gaagcagaggctgctggggaaga 507
Score = 40.1 bits (20), Expect = 0.18
Identities = 44/52 (84%)
Strand = Plus / Plus
Query: 789 ggagaatggggaggaggccccggggcctgacccctcactggaccgtatgctc 840
||||||||| || ||||||||||||| | |||||| || ||||| ||||||
Sbjct: 787 ggagaatggagaagaggccccggggctcggcccctctcttgaccgcatgctc 838
>gnl|UG|Mm#S9707824 Mus musculus SEC14-like 1 (S. cerevisiae)
(Sec14l1), mRNA /cds=(136,2295) /gb=NM_028777
/gi=21311922 /ug=Mm.272312 /len=2747
Length = 2747
Score = 42.1 bits (21), Expect = 0.046
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 289 acctacggcagctggaggagg 309
|||||||||||||||||||||
Sbjct: 632 acctacggcagctggaggagg 652
>gnl|UG|Hs#S17091078 Homo sapiens similar to interleukin 9 receptor
(LOC374678), mRNA /cds=(226,1113) /gb=XM_351030
/gi=37542178 /ug=Hs.459588 /len=1521
Length = 1521
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 538 ccaggctccccatagacaaggccc 561
|||||||||||| |||||||||||
Sbjct: 306 ccaggctccccagagacaaggccc 329
>gnl|UG|Hs#S16886785 Homo sapiens cDNA FLJ43931 fis, clone
TESTI4013667 /gb=AK125919 /gi=34532194 /ug=Hs.444965
/len=4026
Length = 4026
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 253 aggaagccattgctgaggtc 272
||||||||||||||||||||
Sbjct: 552 aggaagccattgctgaggtc 533
>gnl|UG|Hs#S14863436 Homo sapiens interleukin 9 receptor (IL9R),
transcript variant 2, mRNA /cds=(194,1192) /gb=NM_176786
/gi=29171683 /ug=Hs.406228 /len=2175
Length = 2175
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 538 ccaggctccccatagacaaggccc 561
|||||||||||| |||||||||||
Sbjct: 1030 ccaggctccccagagacaaggccc 1053
>gnl|UG|Hs#S2004529 EST381912 MAGE resequences, MAGK Homo sapiens
cDNA, mRNA sequence /gb=AW969834 /gi=8159678
/ug=Hs.303303 /len=474
Length = 474
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 366 acaggggactggttccagga 385
||||||||||||||||||||
Sbjct: 209 acaggggactggttccagga 190
>gnl|UG|Hs#S4620331 Homo sapiens cDNA FLJ33753 fis, clone
BRCAN2000383. /gb=AK091072 /gi=21749355 /ug=Hs.170079
/len=2763
Length = 2763
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 366 acaggggactggttccagga 385
||||||||||||||||||||
Sbjct: 1993 acaggggactggttccagga 2012
>gnl|UG|Mm#S14788830 Mus musculus cDNA sequence BC039632 (BC039632),
mRNA /cds=(146,1804) /gb=XM_284356 /gi=38087438
/ug=Mm.178463 /len=2172
Length = 2172
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 195 gagccagagcctgaggctga 214
||||||||||||||||||||
Sbjct: 1739 gagccagagcctgaggctga 1758
>gnl|UG|Mm#S10828694 Mus musculus hypothetical protein C630025L14
(C630025L14), mRNA /cds=(1800,2132) /gb=NM_172489
/gi=27369665 /ug=Mm.177635 /len=2376
Length = 2376
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 803 aggccccggggcctgacccctcac 826
||||||||||||||| ||||||||
Sbjct: 1762 aggccccggggcctgtcccctcac 1785
Database: UniGene(Bt+Hs+Ssc+Mm)
Posted date: Jan 30, 2004 10:32 AM
Number of letters in database: 272,110,533
Number of sequences in database: 238,354
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 199,447
Number of Sequences: 238354
Number of extensions: 199447
Number of successful extensions: 24315
Number of sequences better than 10.0: 40
length of query: 840
length of database: 272,110,533
effective HSP length: 19
effective length of query: 821
effective length of database: 267,581,807
effective search space: 219684663547
effective search space used: 219684663547
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)