Search to UniGene2 database
Query= 20040204C-003594 (20040204C-003594) 20040204C-003594
(842 letters)
Database: UniGene(Bt+Hs+Ssc+Mm)
238,354 sequences; 272,110,533 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gnl|UG|Hs#S2652429 Homo sapiens cDNA FLJ14337 fis, clone PLACE40... 38 0.72
Alignment gnl|UG|Mm#S10224569 BY221865 RIKEN full-length enriched, activat... 38 0.72
Alignment gnl|UG|Mm#S9077051 Mus musculus 0 day neonate head cDNA, RIKEN f... 38 0.72
Alignment gnl|UG|Ssc#S18358820 911545 MARC 4PIG Sus scrofa cDNA 5', mRNA s... 38 0.72
Alignment gnl|UG|Hs#S4412396 AGENCOURT_7260644 NIH_MGC_71 Homo sapiens cDN... 36 2.8
Alignment gnl|UG|Hs#S11151989 BX091990 Soares fetal liver spleen 1NFLS Hom... 36 2.8
Alignment gnl|UG|Hs#S3974593 603614227F1 NIH_MGC_108 Homo sapiens cDNA clo... 36 2.8
Alignment gnl|UG|Hs#S4435645 Homo sapiens delta-notch-like EGF repeat-cont... 36 2.8
Alignment gnl|UG|Hs#S3547219 Homo sapiens chromosome 1 open reading frame ... 36 2.8
Alignment gnl|UG|Mm#S7452451 ue20g07.x1 Sugano mouse embryo mewa Mus muscu... 36 2.8
>gnl|UG|Hs#S2652429 Homo sapiens cDNA FLJ14337 fis, clone
PLACE4000494. /gb=AK024399 /gi=10436778 /ug=Hs.437875
/len=4588
Length = 4588
Score = 38.2 bits (19), Expect = 0.72
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 252 ggaggctgctacagccttg 270
|||||||||||||||||||
Sbjct: 2306 ggaggctgctacagccttg 2324
>gnl|UG|Mm#S10224569 BY221865 RIKEN full-length enriched, activated
spleen Mus musculus cDNA clone F830224E07 5', mRNA
sequence /clone=F830224E07 /clone_end=5' /gb=BY221865
/gi=26402968 /ug=Mm.304399 /len=367
Length = 367
Score = 38.2 bits (19), Expect = 0.72
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 756 catttgggttgtttgtttg 774
|||||||||||||||||||
Sbjct: 207 catttgggttgtttgtttg 225
>gnl|UG|Mm#S9077051 Mus musculus 0 day neonate head cDNA, RIKEN
full-length enriched library, clone:4833408G04
product:unclassifiable, full insert sequence /gb=AK014666
/gi=12852660 /ug=Mm.159247 /len=2121
Length = 2121
Score = 38.2 bits (19), Expect = 0.72
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 460 tagatataatttatattca 478
|||||||||||||||||||
Sbjct: 1303 tagatataatttatattca 1285
>gnl|UG|Ssc#S18358820 911545 MARC 4PIG Sus scrofa cDNA 5', mRNA
sequence /clone_end=5' /gb=CK454261 /gi=40801475
/ug=Ssc.2936 /len=836
Length = 836
Score = 38.2 bits (19), Expect = 0.72
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 378 ctccaccaaagagcctctg 396
|||||||||||||||||||
Sbjct: 482 ctccaccaaagagcctctg 500
>gnl|UG|Hs#S4412396 AGENCOURT_7260644 NIH_MGC_71 Homo sapiens cDNA
clone IMAGE:5785376 5', mRNA sequence
/clone=IMAGE:5785376 /clone_end=5' /gb=BQ219350
/gi=20400750 /ti=121442118 /ug=Hs.512069 /len=1616
Length = 1616
Score = 36.2 bits (18), Expect = 2.8
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 190 cctcttgcatgtcctgtg 207
||||||||||||||||||
Sbjct: 1487 cctcttgcatgtcctgtg 1470
>gnl|UG|Hs#S11151989 BX091990 Soares fetal liver spleen 1NFLS Homo
sapiens cDNA clone IMAGp998P0786 ; IMAGE:111222, mRNA
sequence /clone=IMAGp998P0786_;_IMAGE:111222
/gb=BX091990 /gi=27822687 /ug=Hs.493430 /len=575
Length = 575
Score = 36.2 bits (18), Expect = 2.8
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 756 catttgggttgtttgttt 773
||||||||||||||||||
Sbjct: 373 catttgggttgtttgttt 356
>gnl|UG|Hs#S3974593 603614227F1 NIH_MGC_108 Homo sapiens cDNA clone
IMAGE:5420143 5', mRNA sequence /clone=IMAGE:5420143
/clone_end=5' /gb=BM040768 /gi=16770035 /ti=66366070
/ug=Hs.469024 /len=1076
Length = 1076
Score = 36.2 bits (18), Expect = 2.8
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 365 ccagggattccgtctcca 382
||||||||||||||||||
Sbjct: 938 ccagggattccgtctcca 955
>gnl|UG|Hs#S4435645 Homo sapiens delta-notch-like EGF
repeat-containing transmembrane (DNER), mRNA
/cds=(138,2351) /gb=NM_139072 /gi=31542542 /ug=Hs.234074
/len=3308
Length = 3308
Score = 36.2 bits (18), Expect = 2.8
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 751 atttacatttgggttgtttgtt 772
||||||||||| ||||||||||
Sbjct: 3069 atttacatttgagttgtttgtt 3090
>gnl|UG|Hs#S3547219 Homo sapiens chromosome 1 open reading frame 21
(C1orf21), mRNA /cds=(400,765) /gb=NM_030806 /gi=13540595
/ug=Hs.12532 /len=10215
Length = 10215
Score = 36.2 bits (18), Expect = 2.8
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 264 agccttgccacttccttt 281
||||||||||||||||||
Sbjct: 1812 agccttgccacttccttt 1829
>gnl|UG|Mm#S7452451 ue20g07.x1 Sugano mouse embryo mewa Mus musculus
cDNA clone IMAGE:1480956 3'. /clone=IMAGE:1480956
/clone_end=3' /gb=AI036340 /gi=3260031 /ti=88195874
/ug=Mm.324036 /len=976
Length = 976
Score = 36.2 bits (18), Expect = 2.8
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 510 ttcagcaccaaggagagtgcct 531
|||||||| |||||||||||||
Sbjct: 158 ttcagcacaaaggagagtgcct 179
Database: UniGene(Bt+Hs+Ssc+Mm)
Posted date: Jan 30, 2004 10:32 AM
Number of letters in database: 272,110,533
Number of sequences in database: 238,354
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 842
length of database: 272,110,533
effective HSP length: 19
effective length of query: 823
effective length of database: 267,581,807
effective search space: 220219827161
effective search space used: 220219827161
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)