>20040204C-004323 (20040204C-004323) 20040204C-004323 CTTTGCTTTT AGCCGAGACG CAGGCGCAAC TCGCGGCTGC TGCGGGGATC CTTGTGACCC TTCCGGTCGG TACAGCCAAT CCGTGCACAG AGAAGCGGGG CGGACCGAGA GGAGCGGAGC GGAGGGAGCT CTTGAGAGCC ACGGCCGCCG CCACTGCCGC GGCAGGGGCG TGGAGGGCAG GGGGCGGCCC GGGCCGCGGT TGCAAACATG GCTCAAAGCA GAGATGGTGG AAACCCCTTC GCCGAGCCCG GCGAGCTTGA CAACCCCTTT CAGGACCCAG CTGTGATCCA GCACCGACCC AGCCCGCAGT ATGCCACGCT TGACGTCTAC AACCCTTTTG AGACCCGGGA GCCACCACCA AGCTATGAGC CTCCTGCCCC TGTTCCAGTT GCACCACCCT CAGCCGCCCC CTTGCAGTCC TCGAGAAAGC TCAGCCCCAC AGAACCCAAG AACTATGGTT CCTACAGCAC CCAGGCTTCA GCTGCAGCAG CCACAGCTGA ACTGCTAAAG AAGCAGGAGG AGCTCAACCG GAAGGCAGAG GAGTTGGACC GGAGGGAGCG AGAGCTGCAG CATGCTGCCC TGGGGGGCAC AGCTACTCGA CAGAACAATT GGCCTCCTCT ACCTTCGTTT TGCCCAGTTC AGCCCTGCTT CTTCCAGGAC ATCTCTATGG AGATCCCCCA AGAATTTCAG AAGACAGTAT CCACGATGTA CTACCTCTGG ATGTGCAGCA CCCTGGCTCT TCTCCTGAAT TTCCTCGCCT GCCTGGCTAG CTTCTGTGTG GAGACCAACA CTGGCTCAGG CTTCGGGCTC TCAATCCTCT GGATCCTCCT GTTCACTCCC TGCTCCTTCG TCTGCTGGTA CCGTCCCATG TATAAGGCCT TCCGGAGTGA CAGTTCATTC AATTTCTTCG TTTTCTTCTT CATTTTCTTC GTCCAGGATG TCCTATATGT TCTGCAGGCC ATTGGCATCC CAGGTTGGGG GTTCAGTGGC TGGATCTCCG CTTTGATGTT GGTGAACACC AACGCGGCTG TAGCTGTGCT TATGCTGCTG GTCGCCCTGT TCTTCACTGG CATCGCTGTG CTGGGAATTG TGATGCTAAA GCGGATCCAC TCCTTGTATC GCCGCACGGG TGCCAGCTTT CAGAAGGCCC AGCAAGAATT TGCTGCCGGT GTCTTCTCCA ACCCTGCGGT GCGAACTGCA GCTGCCAATG CAGCCCGCTG GAGCTGCCGA AAATGCCTTC CGGGCCCCCG TGACCCCCTG ACTGGGATGC TCTGGCCCTG CCACTTGAGG GAGCTGACCT ACCCCCCATC CCTGAGGTCT CTGGGAC
Query= 20040204C-004323 (20040204C-004323) 20040204C-004323
(1327 letters)
Database: UniGene(Bt+Hs+Ssc+Mm)
238,354 sequences; 272,110,533 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gnl|UG|Ssc#S18336044 BP463291 full-length enriched swine cDNA li... 1675 0.0
Alignment gnl|UG|Hs#S1729928 Homo sapiens secretory carrier membrane prote... 1515 0.0
Alignment gnl|UG|Bt#S11908436 AV602196 Bos taurus kidney fetus Bos taurus ... 646 0.0
Alignment gnl|UG|Mm#S8042288 Mus musculus secretory carrier membrane prote... 601 e-170
Alignment gnl|UG|Mm#S8712296 uu11h02.y2 Soares_mammary_gland_NMLMG Mus mus... 125 6e-27
Alignment gnl|UG|Hs#S4435528 Homo sapiens secretory carrier membrane prote... 52 8e-05
Alignment gnl|UG|Hs#S1731077 Homo sapiens secretory carrier membrane prote... 44 0.019
Alignment gnl|UG|Mm#S9736929 UI-M-EW0-bxh-c-15-0-UI.r1 NIH_BMAP_EW0 Mus mu... 44 0.019
Alignment gnl|UG|Mm#S8762461 Mus musculus secretory carrier membrane prote... 44 0.019
Alignment gnl|UG|Ssc#S18360850 917024 MARC 4PIG Sus scrofa cDNA 3', mRNA s... 44 0.019
>gnl|UG|Ssc#S18336044 BP463291 full-length enriched swine cDNA
library, adult uterus Sus scrofa cDNA clone UTR010072C02
5', mRNA sequence /clone=UTR010072C02 /clone_end=5'
/gb=BP463291 /gi=40481863 /ug=Ssc.19149 /len=919
Length = 919
Score = 1675 bits (845), Expect = 0.0
Identities = 866/869 (99%), Gaps = 3/869 (0%)
Strand = Plus / Plus
Query: 437 ccacagaacccaagaactatggttcctacagcacccaggcttcagctgcagcagccacag 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54 ccacagaacccaagaactatggttcctacagcacccaggcttcagctgcagcagccacag 113
Query: 497 ctgaactgctaaagaagcaggaggagctcaaccggaaggcagaggagttggaccggaggg 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 ctgaactgctaaagaagcaggaggagctcaaccggaaggcagaggagttggaccggaggg 173
Query: 557 agcgagagctgcagcatgctgccctggggggcacagctactcgacagaacaattggcctc 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 agcgagagctgcagcatgctgccctggggggcacagctactcgacagaacaattggcctc 233
Query: 617 ctctaccttcgttttgcccagttcagccctgcttcttccaggacatctctatggagatcc 676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 ctctaccttcgttttgcccagttcagccctgcttcttccaggacatctctatggagatcc 293
Query: 677 cccaagaatttcagaagacagtatccacgatgtactacctctggatgtgcagcaccctgg 736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 cccaagaatttcagaagacagtatccacgatgtactacctctggatgtgcagcaccctgg 353
Query: 737 ctcttctcctgaatttcctcgcctgcctggctagcttctgtgtggagaccaacactggct 796
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ctcttctcctgaatttcctcgcctgcctggctagcttctgtgtggagaccaacactggct 413
Query: 797 caggcttcgggctctcaatcctctggatcctcctgttcactccctgctccttcgtctgct 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 caggcttcgggctctcaatcctctggatcctcctgttcactccctgctccttcgtctgct 473
Query: 857 ggtaccgtcccatgtataaggccttccggagtgacagttcattcaatttcttcgttttct 916
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ggtaccgtcccatgtataaggccttccggagtgacagttcattcaatttcttcgttttct 533
Query: 917 tcttcattttcttcgtccaggatgtcctatatgttctgcaggccattggcatcccaggtt 976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 tcttcattttcttcgtccaggatgtcctatatgttctgcaggccattggcatcccaggtt 593
Query: 977 gggggttcagtggctggatctccgctttgatgttggtgaacaccaacgcggctgtagctg 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 gggggttcagtggctggatctccgctttgatgttggtgaacaccaacgcggctgtagctg 653
Query: 1037 tgcttatgctgctggtcgccctgttcttcactggcatcgctgtgctgggaattgtgatgc 1096
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 tgcttatgctgctggtcgccctgttcttcactggcatcgctgtgctgggaattgtgatgc 713
Query: 1097 taaagcggatccactccttgtatcgccgcacgggtgccagctttcagaaggcccagcaag 1156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 taaagcggatccactccttgtatcgccgcacgggtgccagctttcagaaggcccagcaag 773
Query: 1157 aatttgctgccggtgtcttctccaaccctgcggtgcgaactgcagctgccaatgcagccc 1216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 774 aatttgctgccggtgtcttctccaaccctgcggtgcgaactgcagctgccaatgcag-cc 832
Query: 1217 gctggagctgccgaaaatgccttccgggcccccgtgaccccctgactgggatgctctggc 1276
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 833 gctggagctgccgaaaatgccttccggg-ccccgtga-cccctgactgggatgctctggc 890
Query: 1277 cctgccacttgagggagctgacctacccc 1305
|||||||||||||||||||||||||||||
Sbjct: 891 cctgccacttgagggagctgacctacccc 919
Score = 113 bits (57), Expect = 2e-23
Identities = 57/57 (100%)
Strand = Plus / Plus
Query: 86 cacagagaagcggggcggaccgagaggagcggagcggagggagctcttgagagccac 142
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cacagagaagcggggcggaccgagaggagcggagcggagggagctcttgagagccac 57
>gnl|UG|Hs#S1729928 Homo sapiens secretory carrier membrane protein 3
(SCAMP3), transcript variant 1, mRNA /cds=(254,1297)
/gb=NM_005698 /gi=16445418 /ug=Hs.200600 /len=1614
Length = 1614
Score = 1515 bits (764), Expect = 0.0
Identities = 1079/1180 (91%), Gaps = 3/1180 (0%)
Strand = Plus / Plus
Query: 148 ccgccactgccgcggcaggggcgtggagggcagggggcggcccgggccgcggttgcaaac 207
|||||||||| |||||||||||||||||||||| |||| || |||||| |||||||||
Sbjct: 194 ccgccactgctgcggcaggggcgtggagggcagagggccgcggaggccgcagttgcaaac 253
Query: 208 atggctcaaagcagagatggtggaaaccccttcgccgagcccggcgagcttgacaacccc 267
|||||||| |||||||| || |||||||| |||||||||||| |||||||||||||||||
Sbjct: 254 atggctcagagcagagacggcggaaacccgttcgccgagcccagcgagcttgacaacccc 313
Query: 268 tttcaggacccagctgtgatccagcaccgacccagcccgcagtatgccacgcttgacgtc 327
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 314 tttcaggacccagctgtgatccagcaccgacccagccggcagtatgccacgcttgacgtc 373
Query: 328 tacaacccttttgagacccgggagccaccaccaagctatgagcctcctgcccctgttcca 387
||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||
Sbjct: 374 tacaacccttttgagacccgggagccaccaccagcctatgagcctccagcccctgcccca 433
Query: 388 gttgcaccaccctcagccgcccccttgcagtcctcgagaaagctcagccccacagaaccc 447
| | ||||||||||| || |||||||| ||||||||||||||||||||||||||||
Sbjct: 434 ttgcctccaccctcagctccctccttgcagccctcgagaaagctcagccccacagaacct 493
Query: 448 aagaactatggttcctacagcacccaggcttcagctgcagcagccacagctgaactgcta 507
||||||||||| || |||||||| ||||| ||||||||||||||||||||||| |||||
Sbjct: 494 aagaactatggctcatacagcactcaggcctcagctgcagcagccacagctgagctgctg 553
Query: 508 aagaagcaggaggagctcaaccggaaggcagaggagttggaccggagggagcgagagctg 567
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 554 aagaaacaggaggagctcaaccggaaggcagaggagttggaccgaagggagcgagagctg 613
Query: 568 cagcatgctgccctggggggcacagctactcgacagaacaattggcctcctctaccttcg 627
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 614 cagcatgctgccctggggggcacagctactcgacagaacaattggccccctctaccttct 673
Query: 628 ttttgcccagttcagccctgcttcttccaggacatctctatggagatcccccaagaattt 687
||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 674 ttttgtccagttcagccctgctttttccaggacatctccatggagatcccccaagaattt 733
Query: 688 cagaagacagtatccacgatgtactacctctggatgtgcagcaccctggctcttctcctg 747
|||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 734 cagaagactgtatccaccatgtactacctctggatgtgcagcacgctggctcttctcctg 793
Query: 748 aatttcctcgcctgcctggctagcttctgtgtggagaccaacactggctcaggcttcggg 807
|| ||||||||||||||||| |||||||||||||| ||||||| |||| ||||||| |||
Sbjct: 794 aacttcctcgcctgcctggccagcttctgtgtggaaaccaacaatggcgcaggctttggg 853
Query: 808 ctctcaatcctctggatcctcctgttcactccctgctccttcgtctgctggtaccgtccc 867
|| || ||||||||| ||||||| ||||||||||||||||| |||||||||||||| |||
Sbjct: 854 ctttctatcctctgggtcctccttttcactccctgctcctttgtctgctggtaccgcccc 913
Query: 868 atgtataaggccttccggagtgacagttcattcaatttcttcgttttcttcttcattttc 927
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 914 atgtataaggctttccggagtgacagttcattcaatttcttcgttttcttcttcattttc 973
Query: 928 ttcgtccaggatgtcctatatgttctgcaggccattggcatcccaggttgggggttcagt 987
|||||||||||||| || | ||| || ||||||||||| |||||||||||||| ||||||
Sbjct: 974 ttcgtccaggatgtgctctttgtcctccaggccattggtatcccaggttggggattcagt 1033
Query: 988 ggctggatctccgctttgatgttggtgaacaccaacgcggctgtagctgtgcttatgctg 1047
||||||||||| ||| || || || ||| |||| | || ||| | ||||| ||||||
Sbjct: 1034 ggctggatctctgctctggtggtgccgaagggcaacacagcagtatccgtgctcatgctg 1093
Query: 1048 ctggtcgccctgttcttcactggcatcgctgtgctgggaattgtgatgctaaagcggatc 1107
|||||||||||| ||||||||||||| |||||||| |||||||| ||||| || ||||||
Sbjct: 1094 ctggtcgccctgctcttcactggcattgctgtgctaggaattgtcatgctgaaacggatc 1153
Query: 1108 cactccttgtatcgccgcacgggtgccagctttcagaaggcccagcaagaatttgctgcc 1167
|||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1154 cactccttataccgccgcacaggtgccagctttcagaaggcccagcaagaatttgctgct 1213
Query: 1168 ggtgtcttctccaaccctgcggtgcgaactgcagctgccaatgcagcccgctggagctgc 1227
||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||
Sbjct: 1214 ggtgtcttctccaaccctgcggtgcgaaccgcagctgccaatgcag-ccgctggggctgc 1272
Query: 1228 cgaaaatgccttccgggcccccgtgaccccctgactgggatgctctggccctgccacttg 1287
|||||||||||||||| |||||||| |||||||||||||||| |||||||||| |||||
Sbjct: 1273 tgaaaatgccttccggg-ccccgtga-cccctgactgggatgccctggccctgctacttg 1330
Query: 1288 agggagctgacctaccccccatccctgaggtctctgggac 1327
||||||||||| || | ||| ||||| |||||||||||||
Sbjct: 1331 agggagctgacttagctcccgtccctaaggtctctgggac 1370
Score = 125 bits (63), Expect = 6e-27
Identities = 81/87 (93%)
Strand = Plus / Plus
Query: 16 agacgcaggcgcaactcgcggctgctgcggggatccttgtgacccttccggtcggtacag 75
||||||||||||||| | ||||||||||||||||||||||| |||||||||||||| |
Sbjct: 68 agacgcaggcgcaacccacggctgctgcggggatccttgtggcccttccggtcggtggaa 127
Query: 76 ccaatccgtgcacagagaagcggggcg 102
|||||||||||||||||||||||||||
Sbjct: 128 ccaatccgtgcacagagaagcggggcg 154
>gnl|UG|Bt#S11908436 AV602196 Bos taurus kidney fetus Bos taurus
cDNA clone E1KI008G11 5', mRNA sequence
/clone=E1KI008G11 /clone_end=5' /gb=AV602196 /gi=9724520
/ug=Bt.3368 /len=713
Length = 713
Score = 646 bits (326), Expect = 0.0
Identities = 507/560 (90%), Gaps = 7/560 (1%)
Strand = Plus / Plus
Query: 22 aggcgcaactcgcggctgctgcggggatccttgtgacccttccggtcggtacagccaatc 81
||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 74 aggcgcaactcgctgctgctgcggggatccttgtgacccttccggtcggt-caaccaatc 132
Query: 82 cgtgcacagagaagcggggcggaccgagaggagcggagcggagggagctcttgagagcca 141
||||||| | ||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct: 133 cgtgcacggggaagcggggcggaccgagaagagcggagcggagggagctct-gagagccn 191
Query: 142 -cggccgccgccactgccgcggcaggggc-gtggagggcagggggcggcccgggccgcgg 199
| | ||| |||||||||||||||||||| |||||||| ||||||||| | ||| |
Sbjct: 192 gctgncgc-gccactgccgcggcaggggccgtggagggntnggggcggccaag-ccgaag 249
Query: 200 ttgcaaacatggctcaaagcagagatggtggaaaccccttcgccgagcccggcgagcttg 259
|| |||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 250 ttncaaacatggctcaaggcagagacggtggaaaccctttcgccgagcccggcgagcttg 309
Query: 260 acaacccctttcaggacccagctgtgatccagcaccgacccagcccgcagtatgccacgc 319
|||||||||||||||||||||||||||||||||| ||||||||| |||| ||||| || |
Sbjct: 310 acaacccctttcaggacccagctgtgatccagcatcgacccagcacgcactatgctactc 369
Query: 320 ttgacgtctacaacccttttgagacccgggagccaccaccaagctatgagcctcctgccc 379
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 370 ttgacgtctacaacccttttgagacccgggagccaccagcaagctatgagcctcctgccc 429
Query: 380 ctgttccagttgcaccaccctcagccgcccccttgcagtcctcgagaaagctcagcccca 439
||||||| | || ||||||||||| | |||||||||||||| ||||| ||||||||||
Sbjct: 430 ctgttccgatagctccaccctcagctccacccttgcagtcctcaagaaaactcagcccca 489
Query: 440 cagaacccaagaactatggttcctacagcacccaggcttcagctgcagcagccacagctg 499
||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||
Sbjct: 490 cagaacccaagaactatggcttctacagcacccaggcttcaactgcagcagccacagctg 549
Query: 500 aactgctaaagaagcaggaggagctcaaccggaaggcagaggagttggaccggagggagc 559
| ||| ||||||| |||||||||||||||| |||||| ||||||||||||| | |||||
Sbjct: 550 agctg-taaagaaacaggaggagctcaacccaaaggcaaaggagttggaccgaanggagc 608
Query: 560 gagagctgcagcatgctgcc 579
|||| || ||||||||||||
Sbjct: 609 gagaacttcagcatgctgcc 628
>gnl|UG|Mm#S8042288 Mus musculus secretory carrier membrane protein
3 (Scamp3), mRNA /cds=(15,1064) /gb=NM_011886
/gi=6755403 /ug=Mm.257052 /len=1391
Length = 1391
Score = 601 bits (303), Expect = e-170
Identities = 510/579 (88%)
Strand = Plus / Plus
Query: 415 cagtcctcgagaaagctcagccccacagaacccaagaactatggttcctacagcacccag 474
|||||||| |||||||||||||||||||| |||| |||||| || |||||||||||||||
Sbjct: 228 cagtcctcaagaaagctcagccccacagagcccaggaactacggctcctacagcacccag 287
Query: 475 gcttcagctgcagcagccacagctgaactgctaaagaagcaggaggagctcaaccggaag 534
|| ||||||||||| ||||| ||||| ||||| |||||||||||||| |||||||| |
Sbjct: 288 gcctcagctgcagcggccactgctgagctgctgaagaagcaggaggaactcaaccgcaca 347
Query: 535 gcagaggagttggaccggagggagcgagagctgcagcatgctgccctggggggcacagct 594
||||||||||||||||| |||||||||| |||||||||| |||||||| || |||
Sbjct: 348 gcagaggagttggaccgccgggagcgagaactgcagcatgtcgccctgggtggtgcaggc 407
Query: 595 actcgacagaacaattggcctcctctaccttcgttttgcccagttcagccctgcttcttc 654
|||||||||||||| |||||||| ||||| || |||||||| || |||| ||||| |||
Sbjct: 408 actcgacagaacaactggcctcccctaccgtctttttgccctgtaaagccttgctttttc 467
Query: 655 caggacatctctatggagatcccccaagaatttcagaagacagtatccacgatgtactac 714
|| ||||||||||||||||| |||||||||||||||||||| || ||||| |||||||||
Sbjct: 468 caagacatctctatggagataccccaagaatttcagaagacggtgtccaccatgtactac 527
Query: 715 ctctggatgtgcagcaccctggctcttctcctgaatttcctcgcctgcctggctagcttc 774
||||||||||||||||| ||||||||||||||||| ||| ||||||||||||| || |||
Sbjct: 528 ctctggatgtgcagcactctggctcttctcctgaacttcttcgcctgcctggccaggttc 587
Query: 775 tgtgtggagaccaacactggctcaggcttcgggctctcaatcctctggatcctcctgttc 834
|||||||| ||| || |||||||||||| ||||| || || |||||| | ||||| |||
Sbjct: 588 tgtgtggacaccggcagtggctcaggctttgggctgtctatgctctggctgctccttttc 647
Query: 835 actccctgctccttcgtctgctggtaccgtcccatgtataaggccttccggagtgacagt 894
|||||||||||||| |||||||||||||| || ||||||||||| ||||||||||| |||
Sbjct: 648 actccctgctcctttgtctgctggtaccgcccgatgtataaggctttccggagtgatagt 707
Query: 895 tcattcaatttcttcgttttcttcttcattttcttcgtccaggatgtcctatatgttctg 954
|||||||||||||||||||| |||||||||||||||||||||||||| | | ||| ||
Sbjct: 708 tcattcaatttcttcgtttttttcttcattttcttcgtccaggatgtgttctttgtcctc 767
Query: 955 caggccattggcatcccaggttgggggttcagtggctgg 993
|||||||||||||||||||| ||||| ||||| ||||||
Sbjct: 768 caggccattggcatcccagggtggggcttcagcggctgg 806
Score = 248 bits (125), Expect = 6e-64
Identities = 192/213 (90%), Gaps = 1/213 (0%)
Strand = Plus / Plus
Query: 1036 gtgcttatgctgctggtcgccctgttcttcactggcatcgctgtgctgggaattgtgatg 1095
||||| |||||||| | |||||| ||||||| |||||||| ||||||||||| ||||||
Sbjct: 849 gtgctcatgctgctcgatgccctgctcttcaccggcatcgcagtgctgggaatcgtgatg 908
Query: 1096 ctaaagcggatccactccttgtatcgccgcacgggtgccagctttcagaaggcccagcaa 1155
|| ||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||
Sbjct: 909 ctgaagcggatccactccctgtaccgccaaacgggtgccagctttcagaaggcccagcaa 968
Query: 1156 gaatttgctgccggtgtcttctccaaccctgcggtgcgaactgcagctgccaatgcagcc 1215
||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||| |
Sbjct: 969 gaatttgctgctggtgtcttctccaaccctgcggttcgaactgctgctgccaatgcag-c 1027
Query: 1216 cgctggagctgccgaaaatgccttccgggcccc 1248
|| |||||||| |||||||||||| |||||||
Sbjct: 1028 tgccggagctgctgaaaatgccttcagggcccc 1060
Score = 172 bits (87), Expect = 3e-41
Identities = 155/178 (87%)
Strand = Plus / Plus
Query: 200 ttgcaaacatggctcaaagcagagatggtggaaaccccttcgccgagcccggcgagcttg 259
|||||||||||||||| |||||||| || || || | | |||| ||||||||||||
Sbjct: 7 ttgcaaacatggctcagagcagagacaccgggaatccatcccccgactccggcgagcttg 66
Query: 260 acaacccctttcaggacccagctgtgatccagcaccgacccagcccgcagtatgccacgc 319
|||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct: 67 acaatccctttcaggacccagctgtgatccagcaccgacccagccagcagtatgccacnc 126
Query: 320 ttgacgtctacaacccttttgagacccgggagccaccaccaagctatgagcctcctgc 377
| |||||||||||||| ||||||| ||| ||||| |||||| ||| |||||||||||
Sbjct: 127 tggacgtctacaacccctttgagaaccgagagcccccaccagcctacgagcctcctgc 184
>gnl|UG|Mm#S8712296 uu11h02.y2 Soares_mammary_gland_NMLMG Mus
musculus cDNA clone IMAGE:3371667 5' similar to
SW:SCA3_MOUSE O35609 SECRETORY CARRIER-ASSOCIATED
MEMBRANE PROTEIN 3. ;. /clone=IMAGE:3371667
/clone_end=5' /gb=BE626815 /gi=9907235 /ti=114463046
/ug=Mm.332604 /len=657
Length = 657
Score = 125 bits (63), Expect = 6e-27
Identities = 114/131 (87%)
Strand = Plus / Minus
Query: 755 tcgcctgcctggctagcttctgtgtggagaccaacactggctcaggcttcgggctctcaa 814
||||||||||||| || ||||||||||| ||| || |||||||||||| ||||| || |
Sbjct: 652 tcgcctgcctggccaggttctgtgtggacaccggcagtggctcaggctttgggctgtcta 593
Query: 815 tcctctggatcctcctgttcactccctgctccttcgtctgctggtaccgtcccatgtata 874
| |||||| | ||||| ||||||||||||||||| |||||||||||||| || |||||||
Sbjct: 592 tgctctggctgctccttttcactccctgctcctttgtctgctggtaccgcccgatgtata 533
Query: 875 aggccttccgg 885
|||| ||||||
Sbjct: 532 aggctttccgg 522
Score = 81.8 bits (41), Expect = 8e-14
Identities = 62/69 (89%)
Strand = Plus / Minus
Query: 1036 gtgcttatgctgctggtcgccctgttcttcactggcatcgctgtgctgggaattgtgatg 1095
||||| |||||||| ||||||||| ||||||| |||||||| ||||||||||| ||||||
Sbjct: 430 gtgctcatgctgctcgtcgccctgctcttcaccggcatcgcagtgctgggaatcgtgatg 371
Query: 1096 ctaaagcgg 1104
|| ||||||
Sbjct: 370 ctgaagcgg 362
>gnl|UG|Hs#S4435528 Homo sapiens secretory carrier membrane protein
5 (SCAMP5), mRNA /cds=(31,738) /gb=NM_138967
/gi=20373182 /ug=Hs.7934 /len=3276
Length = 3276
Score = 52.0 bits (26), Expect = 8e-05
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 817 ctctggatcctcctgttcactccctgctccttcgtctgctggtaccgtcccatgtataag 876
|||||| || |||| ||||| |||||||||| ||||||||||| || ||||| || |||
Sbjct: 256 ctctggctcatcctcttcacaccctgctcctacgtctgctggtttcggcccatttacaag 315
Query: 877 gccttc 882
||||||
Sbjct: 316 gccttc 321
>gnl|UG|Hs#S1731077 Homo sapiens secretory carrier membrane protein
2 (SCAMP2), mRNA /cds=(75,1064) /gb=NM_005697
/gi=16445417 /ug=Hs.238030 /len=1313
Length = 1313
Score = 44.1 bits (22), Expect = 0.019
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 832 ttcactccctgctccttcgtctgctggtaccgtcccatgtataaggcctt 881
||||||||||| ||||| | || |||||||| ||||| |||||||||||
Sbjct: 654 ttcactccctgtgccttcctttgttggtaccgacccatctataaggcctt 703
Score = 36.2 bits (18), Expect = 4.5
Identities = 45/54 (83%)
Strand = Plus / Plus
Query: 599 gacagaacaattggcctcctctaccttcgttttgcccagttcagccctgcttct 652
|||||||||| ||||| ||||| || |||| ||||| || ||||||||||||
Sbjct: 421 gacagaacaactggccccctctgccctcgtggtgccctgtgaagccctgcttct 474
>gnl|UG|Mm#S9736929 UI-M-EW0-bxh-c-15-0-UI.r1 NIH_BMAP_EW0 Mus
musculus cDNA clone IMAGE:5708102 5', mRNA sequence
/clone=IMAGE:5708102 /clone_end=5' /gb=BQ745572
/gi=21892359 /ug=Mm.301860 /len=742
Length = 742
Score = 44.1 bits (22), Expect = 0.019
Identities = 55/66 (83%)
Strand = Plus / Plus
Query: 817 ctctggatcctcctgttcactccctgctccttcgtctgctggtaccgtcccatgtataag 876
|||||| || |||| ||||| || ||||||| ||||||||||| || ||||| || |||
Sbjct: 249 ctctggctcatcctcttcacaccttgctcctacgtctgctggtttcggcccatttacaag 308
Query: 877 gccttc 882
||||||
Sbjct: 309 gccttc 314
>gnl|UG|Mm#S8762461 Mus musculus secretory carrier membrane protein
5 (Scamp5), mRNA /cds=(141,848) /gb=NM_020270
/gi=31543673 /ug=Mm.102278 /len=3307
Length = 3307
Score = 44.1 bits (22), Expect = 0.019
Identities = 55/66 (83%)
Strand = Plus / Plus
Query: 817 ctctggatcctcctgttcactccctgctccttcgtctgctggtaccgtcccatgtataag 876
|||||| || |||| ||||| || ||||||| ||||||||||| || ||||| || |||
Sbjct: 366 ctctggctcatcctcttcacaccttgctcctacgtctgctggtttcggcccatttacaag 425
Query: 877 gccttc 882
||||||
Sbjct: 426 gccttc 431
>gnl|UG|Ssc#S18360850 917024 MARC 4PIG Sus scrofa cDNA 3', mRNA
sequence /clone_end=3' /gb=CK456352 /gi=40803566
/ug=Ssc.3034 /len=858
Length = 858
Score = 44.1 bits (22), Expect = 0.019
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 832 ttcactccctgctccttcgtctgctggtaccgtcccatgtataaggcctt 881
||||| ||||| ||||| |||| |||||||| ||||| |||||||||||
Sbjct: 676 ttcaccccctgtgccttcctctgttggtaccgacccatctataaggcctt 725
Database: UniGene(Bt+Hs+Ssc+Mm)
Posted date: Jan 30, 2004 10:32 AM
Number of letters in database: 272,110,533
Number of sequences in database: 238,354
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 1327
length of database: 272,110,533
effective HSP length: 19
effective length of query: 1308
effective length of database: 267,581,807
effective search space: 349997003556
effective search space used: 349997003556
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)