>20040204C-004579 (20040204C-004579) 20040204C-004579 ACATAGGCCG TCTTCAGCCG CAGCATCGAG TCGGCCGTCT TCAGCCGCAG CATCGAGTCG GCCTTGTTGG CCTACTAGAA AAAAAACTCC CTCCTCCAGC TTGTCCTCCG GTCGCGTTGC CACCACAGCG GCCGCTGCCG GGCGCGGTTA CGGCGGGTCG GTTGGTGTGT CTTTCAGCGT CGATTTCTGT GCAGTTGAAC GCCTGCCATG GCTGATTTAG ATCCGTTCGG CGCCCCCGCC GGCCCCTCGC TGGGGAACGG AGTGGCCGGC GAGGAGGACC CGGCCGCGGC CTTCTTGGCG CAGCAGGAGA GCGAGATTGC TGGCATCGAG AACGACGAGG CCTTCGCCAT CCTGGACGGA GGCGCTCCTG GGCCCCAGCC GCACGGCGAG CCGCCGGGGG GTCCGGATGC CGTTGATGGA GTGATGAATG GCGAATACTA CCAGGAGAGT AATGGGCCGA CAGACAGTTA TGCAGCTATT TCACAAGTGG ATCGATTGCA GTCAGAGCCT GAAAGTATCC GTAAATGGAG AGAAGAGCAA ACGGAACGCT TGGAAGCCCT TGATGCCAAT TCTCGGAAGC AGGAAGCAGA GTGGAAAGAA AAAGCAATAA AGGAGCTGGA AGAGTGGTAT GCAAGGCAGG ACGAGCAGTT ACAAAAGACG AAAGCAAACA ACAGGGCAGC AGAAGAAGCC TTTGTAAATG ACATTGAAGA GTCGTCCCCA GGCACGGAGT GGGAACGGGT GGCCCGGCTG TGTGACTTTA ACCCCAAGTC CAGCAAGCAG GCCAAAGATG TCTCCCGCAT GCGTTCTGTC CTCATCTCCC TCAAGCAGGC CCCCCTGGTG CACTGAAGAG CCACCATGTG GAAACACTAC ATCTGCAATA TCTTAATCCT ACTCAGTGAA GCTCTTCACA GTAATTGGAT TAATTATGTT GAGTTCTTTT GGACCAAACC TTTTTGTCTT TAGAGTTGAT CATTGTTTGT GATTGCATGT TTCCTTCAAC TGTGTTCTCC CCTGGCATTC AAAAAAAGAA ACGGAAGCGC CCCCAGGGAA AGGGGAGGGG AGGCCCTCCC AAAGGGGCAC CCCCCAACCC TCTGGCTTTT TGTGCCTTTT ATTCCCGAAA AAAAAAATTT TTCTGTGTTT AAAAACCTTT TAAAAAAAAA AAAAAAAAAA A
Query= 20040204C-004579 (20040204C-004579) 20040204C-004579
(1171 letters)
Database: UniGene(Bt+Hs+Ssc+Mm)
238,354 sequences; 272,110,533 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gnl|UG|Ssc#S18337374 BP464621 full-length enriched swine cDNA li... 1628 0.0
Alignment gnl|UG|Bt#S12072659 Bos taurus clathrin, light polypeptide (Lca)... 670 0.0
Alignment gnl|UG|Hs#S1731806 Homo sapiens clathrin, light polypeptide (Lca... 628 e-178
Alignment gnl|UG|Mm#S8539415 Mus musculus clathrin, light polypeptide (Lca... 496 e-138
Alignment gnl|UG|Bt#S11939874 191335 MARC 4BOV Bos taurus cDNA 5', mRNA se... 246 2e-63
Alignment gnl|UG|Hs#S1027880 os96d08.s1 NCI_CGAP_GC3 Homo sapiens cDNA clo... 165 6e-39
Alignment gnl|UG|Ssc#S18281296 BP437193 full-length enriched swine cDNA li... 151 1e-34
Alignment gnl|UG|Ssc#S18277156 BP433053 full-length enriched swine cDNA li... 151 1e-34
Alignment gnl|UG|Ssc#S18278243 BP434140 full-length enriched swine cDNA li... 147 2e-33
Alignment gnl|UG|Hs#S1731808 Homo sapiens clathrin, light polypeptide (Lcb... 96 5e-18
>gnl|UG|Ssc#S18337374 BP464621 full-length enriched swine cDNA
library, adult uterus Sus scrofa cDNA clone UTR010056G10
5', mRNA sequence /clone=UTR010056G10 /clone_end=5'
/gb=BP464621 /gi=40484534 /ug=Ssc.11113 /len=840
Length = 840
Score = 1628 bits (821), Expect = 0.0
Identities = 827/829 (99%)
Strand = Plus / Plus
Query: 87 ctccctcctccagcttgtcctccggtcgcgttgccaccacagcggccgctgccgggcgcg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 ctccctcctccagcttgtcctccggtcgcgttgccaccacagcggccgctgccgggcgcg 71
Query: 147 gttacggcgggtcggttggtgtgtctttcagcgtcgatttctgtgcagttgaacgcctgc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 gttacggcgggtcggttggtgtgtctttcagcgtcgatttctgtgcagttgaacgcctgc 131
Query: 207 catggctgatttagatccgttcggcgcccccgccggcccctcgctggggaacggagtggc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 catggctgatttagatccgttcggcgcccccgccggcccctcgctggggaacggagtggc 191
Query: 267 cggcgaggaggacccggccgcggccttcttggcgcagcaggagagcgagattgctggcat 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 cggcgaggaggacccggccgcggccttcttggcgcagcaggagagcgagattgctggcat 251
Query: 327 cgagaacgacgaggccttcgccatcctggacggaggcgctcctgggccccagccgcacgg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 cgagaacgacgaggccttcgccatcctggacggaggcgctcctgggccccagccgcacgg 311
Query: 387 cgagccgccggggggtccggatgccgttgatggagtgatgaatggcgaatactaccagga 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 cgagccgccggggggtccggatgccgttgatggagtgatgaatggcgaatactaccagga 371
Query: 447 gagtaatgggccgacagacagttatgcagctatttcacaagtggatcgattgcagtcaga 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 gagtaatgggccgacagacagttatgcagctatttcacaagtggatcgattgcagtcaga 431
Query: 507 gcctgaaagtatccgtaaatggagagaagagcaaacggaacgcttggaagcccttgatgc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gcctgaaagtatccgtaaatggagagaagagcaaacggaacgcttggaagcccttgatgc 491
Query: 567 caattctcggaagcaggaagcagagtggaaagaaaaagcaataaaggagctggaagagtg 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 caattctcggaagcaggaagcagagtggaaagaaaaagcaataaaggagctggaagagtg 551
Query: 627 gtatgcaaggcaggacgagcagttacaaaagacgaaagcaaacaacagggcagcagaaga 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 gtatgcaaggcaggacgagcagttacaaaagacgaaagcaaacaacagggcagcagaaga 611
Query: 687 agcctttgtaaatgacattgaagagtcgtccccaggcacggagtgggaacgggtggcccg 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 agcctttgtaaatgacattgaagagtcgtccccaggcacggagtgggaacgggtggcccg 671
Query: 747 gctgtgtgactttaaccccaagtccagcaagcaggccaaagatgtctcccgcatgcgttc 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 gctgtgtgactttaaccccaagtccagcaagcaggccaaagatgtctcccgcatgcgttc 731
Query: 807 tgtcctcatctccctcaagcaggcccccctggtgcactgaagagccaccatgtggaaaca 866
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 732 tgtcctcatctccctcaagcaggcccccctggtgcactgaaaagccaccatgtggaaaca 791
Query: 867 ctacatctgcaatatcttaatcctactcagtgaagctcttcacagtaat 915
|||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 792 ctacatctgcaatatctttatcctactcagtgaagctcttcacagtaat 840
>gnl|UG|Bt#S12072659 Bos taurus clathrin, light polypeptide (Lca)
(CLTA), mRNA /cds=(103,834) /gb=NM_174022 /gi=31343020
/ug=Bt.1617 /len=1110
Length = 1110
Score = 670 bits (338), Expect = 0.0
Identities = 451/488 (92%), Gaps = 3/488 (0%)
Strand = Plus / Plus
Query: 205 gccatggctgatttagatccgttcggcgcccccgccggc---ccctcgctggggaacgga 261
||||||||||| |||||||||||||||| |||||| ||| ||| | ||||||||||||
Sbjct: 100 gccatggctgagttagatccgttcggcgtccccgctggcggtcccgccctggggaacgga 159
Query: 262 gtggccggcgaggaggacccggccgcggccttcttggcgcagcaggagagcgagattgct 321
||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 160 gtggccggcgaagaggatcctgccgcggccttcttggcgcagcaggagagcgagattgcg 219
Query: 322 ggcatcgagaacgacgaggccttcgccatcctggacggaggcgctcctgggccccagccg 381
||||| |||||||||||||||||||||||||||||||| ||||| || || |||||||
Sbjct: 220 ggcatagagaacgacgaggccttcgccatcctggacggcggcgcccccggatcccagcct 279
Query: 382 cacggcgagccgccggggggtccggatgccgttgatggagtgatgaatggcgaatactac 441
|||||||||||||||||| ||| ||||| ||||||||||||| |||||| || ||||||
Sbjct: 280 cacggcgagccgccggggattccagatgctgttgatggagtgacgaatggagactactac 339
Query: 442 caggagagtaatgggccgacagacagttatgcagctatttcacaagtggatcgattgcag 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 caggagagtaatgggccgacagacagttatgcagctatttcacaagtggatcgattgcag 399
Query: 502 tcagagcctgaaagtatccgtaaatggagagaagagcaaacggaacgcttggaagccctt 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tcagagcctgaaagtatccgtaaatggagagaagagcaaacggaacgcttggaagccctt 459
Query: 562 gatgccaattctcggaagcaggaagcagagtggaaagaaaaagcaataaaggagctggaa 621
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 460 gatgccaattctcggaagcaggaagcggagtggaaagaaaaagcaataaaggagctggac 519
Query: 622 gagtggtatgcaaggcaggacgagcagttacaaaagacgaaagcaaacaacagggcagca 681
||||||||||| |||||||| |||||| |||| ||||| ||||| |||||||||| |||
Sbjct: 520 gagtggtatgcgaggcaggatgagcagctacagaagacaaaagccaacaacagggtggca 579
Query: 682 gaagaagc 689
|| |||||
Sbjct: 580 gatgaagc 587
Score = 615 bits (310), Expect = e-174
Identities = 339/346 (97%), Gaps = 2/346 (0%)
Strand = Plus / Plus
Query: 675 ggcagcagaagaagcctttgtaaatgacattgaagagtcgtccccaggcacggagtggga 734
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 663 ggcagcagaagaagcctttgtaaatgacattgaggagtcgtccccaggcactgagtggga 722
Query: 735 acgggtggcccggctgtgtgactttaaccccaagtccagcaagcaggccaaagatgtctc 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 acgggtggcccggctgtgtgactttaaccccaagtccagcaagcaggccaaagatgtctc 782
Query: 795 ccgcatgcgttctgtcctcatctccctcaagcaggcccccctggtgcactgaagagccac 854
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 783 ccgcatgcgttctgtcctcatctccctcaagcaggcccccctggtgcactgaagagccgc 842
Query: 855 catgtggaaacactacatctgcaatatcttaatcctactcagtgaagctcttcacagtaa 914
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 843 cctgtggaaacactacatctgcaatatcttaatcctactcagtgaagctcttcacggtaa 902
Query: 915 ttggattaattatgttgagttcttttggaccaaacctttttgtctttagagttgatcatt 974
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 903 ttggattaattatgttgagttcttttggaccaaacc-ttttgtctttagagttgatcatt 961
Query: 975 gtttgtgattgcatgtttccttcaactgtgttctcccctggcattc 1020
|||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 962 gtttgtgattgcatgtttccttcaactgtgttct-ccctggcattc 1006
>gnl|UG|Hs#S1731806 Homo sapiens clathrin, light polypeptide (Lca)
(CLTA), transcript variant brain-specific, mRNA
/cds=(75,821) /gb=NM_007096 /gi=6005992 /ug=Hs.207052
/len=1105
Length = 1105
Score = 628 bits (317), Expect = e-178
Identities = 430/468 (91%), Gaps = 6/468 (1%)
Strand = Plus / Plus
Query: 228 cggcgcccccgccggcccctcgctggggaacggagtggccggcg------aggaggaccc 281
||||||||| | ||| ||| |||||||||||||||||||||||| | || |||||
Sbjct: 107 cggcgcccctggcggtcccgcgctggggaacggagtggccggcgccggcgaagaagaccc 166
Query: 282 ggccgcggccttcttggcgcagcaggagagcgagattgctggcatcgagaacgacgaggc 341
||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 167 ggctgcggccttcttggcgcagcaagagagcgagattgcgggcatcgagaacgacgaggc 226
Query: 342 cttcgccatcctggacggaggcgctcctgggccccagccgcacggcgagccgccgggggg 401
|||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct: 227 cttcgccatcctggacggcggcgcccccgggccccagccgcacggcgagccgccgggggg 286
Query: 402 tccggatgccgttgatggagtgatgaatggcgaatactaccaggagagtaatgggccgac 461
||||||||| ||||||||||| |||||||| |||||||||||||| |||||||| || ||
Sbjct: 287 tccggatgctgttgatggagtaatgaatggtgaatactaccaggaaagtaatggtccaac 346
Query: 462 agacagttatgcagctatttcacaagtggatcgattgcagtcagagcctgaaagtatccg 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 agacagttatgcagctatttcacaagtggatcgattgcagtcagagcctgaaagtatccg 406
Query: 522 taaatggagagaagagcaaacggaacgcttggaagcccttgatgccaattctcggaagca 581
||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 407 taaatggagagaagaacaaatggaacgcttggaagcccttgatgccaattctcggaagca 466
Query: 582 ggaagcagagtggaaagaaaaagcaataaaggagctggaagagtggtatgcaaggcagga 641
|||||||||||||||||||| |||||||||||||| ||||| ||||||||||| |||||
Sbjct: 467 agaagcagagtggaaagaaaaggcaataaaggagctagaagaatggtatgcaagacagga 526
Query: 642 cgagcagttacaaaagacgaaagcaaacaacagggcagcagaagaagc 689
||||||| |||| || || |||||||||||||||| ||||| |||||
Sbjct: 527 cgagcagctacagaaaacaaaagcaaacaacagggtggcagatgaagc 574
Score = 573 bits (289), Expect = e-162
Identities = 336/350 (96%), Gaps = 5/350 (1%)
Strand = Plus / Plus
Query: 675 ggcagcagaagaagcctttgtaaatgacattgaagagtcgtccccaggcacggagtggga 734
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 650 ggcagcagaagaagcctttgtaaatgacattgacgagtcgtccccaggcactgagtggga 709
Query: 735 acgggtggcccggctgtgtgactttaaccccaagtccagcaagcaggccaaagatgtctc 794
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 710 acgggtggcccggctgtgtgactttaaccccaagtctagcaagcaggccaaagatgtctc 769
Query: 795 ccgcatgcgttctgtcctcatctccctcaagcaggcccccctggtgcactgaagagccac 854
||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 770 ccgcatgcgctcagtcctcatctccctcaagcaggccccgctggtgcactgaagagccac 829
Query: 855 catgtggaaacactacatctgcaatatcttaatcctactcagtgaagctcttcacagtaa 914
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 830 cctgtggaaacactacatctgcaatatcttaatcctactcagtgaagctcttcacagtca 889
Query: 915 ttggattaattatgttgagttcttttggaccaaacctttttgtctttagagttgatcatt 974
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 890 ttggattaattatgttgagttcttttggaccaaacctttttgtctttagagttgttcatt 949
Query: 975 gtttgtgattgcatgt----ttccttcaactgtgttctcccctggcattc 1020
|||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 950 gtttgtgattgcatgtttccttccttcaactgtgttct-ccctggcattc 998
Score = 46.1 bits (23), Expect = 0.004
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 205 gccatggctgatttagatccgttcggcgcccccgccggc 243
||||||||||| | ||||||||||||||||| ||||||
Sbjct: 72 gccatggctgagctggatccgttcggcgcccctgccggc 110
>gnl|UG|Mm#S8539415 Mus musculus clathrin, light polypeptide (Lca)
(Clta), mRNA /cds=(109,816) /gb=NM_016760 /gi=7949022
/ug=Mm.198817 /len=1089
Length = 1089
Score = 496 bits (250), Expect = e-138
Identities = 383/425 (90%), Gaps = 3/425 (0%)
Strand = Plus / Plus
Query: 265 gccggcgaggaggacccggccgcggccttcttggcgcagcaggagagcgagattgctggc 324
|||||||| || |||||||||||||||||||||||||| | ||||| |||||||| |||
Sbjct: 184 gccggcgaagaagacccggccgcggccttcttggcgcacgaagagagtgagattgcgggc 243
Query: 325 atcgagaacgacgaggccttcgccatcctggacggaggcgctcctgggccccagccgcac 384
||||||||||| ||||||||||||||||||||||| ||||| || || || |||| |||
Sbjct: 244 atcgagaacgatgaggccttcgccatcctggacggcggcgccccggg--ccgagccacac 301
Query: 385 ggcgagccgccggggggtccggatgccgttgatggagtgatgaatggcgaatactaccag 444
||||||||| ||| || ||||||||| ||||| |||||||||||||| ||||||||||||
Sbjct: 302 ggcgagccggcggagg-tccggatgctgttgacggagtgatgaatggtgaatactaccag 360
Query: 445 gagagtaatgggccgacagacagttatgcagctatttcacaagtggatcgattgcagtca 504
||||| ||||| || ||||||||||| ||||| |||||| ||||||||||||||||||||
Sbjct: 361 gagagcaatggtccaacagacagttacgcagccatttcagaagtggatcgattgcagtca 420
Query: 505 gagcctgaaagtatccgtaaatggagagaagagcaaacggaacgcttggaagcccttgat 564
|||||||||||||||||||| |||||||||||||| || || ||| |||||||||| |||
Sbjct: 421 gagcctgaaagtatccgtaagtggagagaagagcagacagagcgcctggaagccctcgat 480
Query: 565 gccaattctcggaagcaggaagcagagtggaaagaaaaagcaataaaggagctggaagag 624
||||||||||||||||| ||||| |||||||||||||| || ||||||||||||||||||
Sbjct: 481 gccaattctcggaagcaagaagcggagtggaaagaaaaggcgataaaggagctggaagag 540
Query: 625 tggtatgcaaggcaggacgagcagttacaaaagacgaaagcaaacaacagggcagcagaa 684
|||||||| ||||||||||||||| |||| ||||| || |||||||||||||||||||||
Sbjct: 541 tggtatgcgaggcaggacgagcagctacagaagacaaaggcaaacaacagggcagcagaa 600
Query: 685 gaagc 689
|||||
Sbjct: 601 gaagc 605
Score = 488 bits (246), Expect = e-136
Identities = 324/346 (93%), Gaps = 3/346 (0%)
Strand = Plus / Plus
Query: 675 ggcagcagaagaagcctttgtaaatgacattgaagagtcgtccccaggcacggagtggga 734
|||||||||||||||||||||||| |||||||| ||||| ||||||||||| ||||||||
Sbjct: 645 ggcagcagaagaagcctttgtaaacgacattgacgagtcatccccaggcactgagtggga 704
Query: 735 acgggtggcccggctgtgtgactttaaccccaagtccagcaagcaggccaaagatgtctc 794
|||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 705 gcgggtggcccccttgtgtgactttaaccccaagtccagcaaacaggccaaagatgtctc 764
Query: 795 ccgcatgcgttctgtcctcatctccctcaagcaggcccccctggtgcactgaagagccac 854
|||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 765 tcgcatgcgctcagtcctcatctccctgaagcaggcccccctggtgcactgaagagccac 824
Query: 855 catgtggaaacactacatctgcaatatcttaatcctactcagtgaagctcttcacagtaa 914
| ||| |||||||||| ||| |||||||||||||||||||||||||||| ||||| ||||
Sbjct: 825 cctgttgaaacactacgtctacaatatcttaatcctactcagtgaagctgttcac-gtaa 883
Query: 915 ttggattaattatgttgagttcttttggaccaaacctttttgtctttagagttgatcatt 974
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 884 ttggattaattatgttgagttcttttggaccaaacc-ttttgtctttagagttgatcatt 942
Query: 975 gtttgtgattgcatgtttccttcaactgtgttctcccctggcattc 1020
||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 943 gtttgtgattgaatgtttccttcaactgtgttct-ccctggcattc 987
>gnl|UG|Bt#S11939874 191335 MARC 4BOV Bos taurus cDNA 5', mRNA
sequence /clone_end=5' /gb=BE722912 /gi=10124208
/ug=Bt.8983 /len=387
Length = 387
Score = 246 bits (124), Expect = 2e-63
Identities = 221/252 (87%), Gaps = 1/252 (0%)
Strand = Plus / Minus
Query: 761 accccaagtccagcaagcaggccaaagatgtctcccgcatgcgttctgtcctcatctccc 820
|||||||||||||||||||||||||| |||| ||||||| | ||| |||||| || ||||
Sbjct: 384 accccaagtccagcaagcaggccaaaaatgtttcccgcaagggttttgtccttatttccc 325
Query: 821 tcaagcaggcccccctggtgcactgaagagccaccatgtggaaacactacatctgcaata 880
|||||||||||||||||||||| | || | || || ||||| ||| |||||| ||||| |
Sbjct: 324 tcaagcaggcccccctggtgcaattaaaaacccccctgtgggaaccctacatttgcaaaa 265
Query: 881 tcttaatcctactcagtgaagctcttcacagtaattggattaattatgttgagttctttt 940
| ||||||||||||||||||||| ||| | | ||||||||||||||||||||||| ||||
Sbjct: 264 ttttaatcctactcagtgaagcttttcccgggaattggattaattatgttgagttttttt 205
Query: 941 ggaccaaacctttttgtctttagagttgatcattgtttgtgattgcatgtttccttcaac 1000
|| || |||| |||||| |||| |||||||||||||||| ||||||| ||||||||||||
Sbjct: 204 gggcccaacc-ttttgtttttaaagttgatcattgtttgggattgcaagtttccttcaac 146
Query: 1001 tgtgttctcccc 1012
|||||| |||||
Sbjct: 145 tgtgttttcccc 134
>gnl|UG|Hs#S1027880 os96d08.s1 NCI_CGAP_GC3 Homo sapiens cDNA clone
IMAGE:1613199 3' similar to gb:M20471 CLATHRIN LIGHT
CHAIN A (HUMAN);, mRNA sequence /clone=IMAGE:1613199
/clone_end=3' /gb=AI001121 /gi=3191675 /ug=Hs.522114
/len=323
Length = 323
Score = 165 bits (83), Expect = 6e-39
Identities = 109/116 (93%), Gaps = 5/116 (4%)
Strand = Plus / Minus
Query: 909 cagtaattggattaattatgttgagttcttttggaccaaacctttttgtctttagagttg 968
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 cagtcattggattaattatgttgagttcttttggaccaaacctttttgtctttagagttg 172
Query: 969 atcattgtttgtgattgcatgt----ttccttcaactgtgttctcccctggcattc 1020
||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 171 ttcattgtttgtgattgcatgtttccttccttcaactgtgttct-ccctggcattc 117
Score = 147 bits (74), Expect = 2e-33
Identities = 86/90 (95%)
Strand = Plus / Minus
Query: 714 gtccccaggcacggagtgggaacgggtggcccggctgtgtgactttaaccccaagtccag 773
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 323 gtccccaggcactgagtgggaacgggtggcccggctgtgtgactttaaccccaagtctag 264
Query: 774 caagcaggccaaagatgtctcccgcatgcg 803
|||||||||||||||||||| || ||||||
Sbjct: 263 caagcaggccaaagatgtctgccccatgcg 234
>gnl|UG|Ssc#S18281296 BP437193 full-length enriched swine cDNA
library, adult lung Sus scrofa cDNA clone LNG010023E04
5', mRNA sequence /clone=LNG010023E04 /clone_end=5'
/gb=BP437193 /gi=40427260 /ug=Ssc.18425 /len=869
Length = 869
Score = 151 bits (76), Expect = 1e-34
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 1 acataggccgtcttcagccgcagcatcgagtcggccgtcttcagccgcagcatcgagtcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acataggccgtcttcagccgcagcatcgagtcggccgtcttcagccgcagcatcgagtcg 60
Query: 61 gccttgttggcctact 76
||||||||||||||||
Sbjct: 61 gccttgttggcctact 76
>gnl|UG|Ssc#S18277156 BP433053 full-length enriched swine cDNA
library, adult lung Sus scrofa cDNA clone LNG010028A01
5', mRNA sequence /clone=LNG010028A01 /clone_end=5'
/gb=BP433053 /gi=40423120 /ug=Ssc.2415 /len=822
Length = 822
Score = 151 bits (76), Expect = 1e-34
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 1 acataggccgtcttcagccgcagcatcgagtcggccgtcttcagccgcagcatcgagtcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acataggccgtcttcagccgcagcatcgagtcggccgtcttcagccgcagcatcgagtcg 60
Query: 61 gccttgttggcctact 76
||||||||||||||||
Sbjct: 61 gccttgttggcctact 76
>gnl|UG|Ssc#S18278243 BP434140 full-length enriched swine cDNA
library, adult lung Sus scrofa cDNA clone LNG010011B03
5', mRNA sequence /clone=LNG010011B03 /clone_end=5'
/gb=BP434140 /gi=40424207 /ug=Ssc.14073 /len=902
Length = 902
Score = 147 bits (74), Expect = 2e-33
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 1 acataggccgtcttcagccgcagcatcgagtcggccgtcttcagccgcagcatcgagtcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acataggccgtcttcagccgcagcatcgagtcggccgtcttcagccgcagcatcgagtcg 60
Query: 61 gccttgttggccta 74
||||||||||||||
Sbjct: 61 gccttgttggccta 74
>gnl|UG|Hs#S1731808 Homo sapiens clathrin, light polypeptide (Lcb)
(CLTB), transcript variant brain, mRNA /cds=(176,865)
/gb=NM_007097 /gi=32483394 /ug=Hs.380749 /len=1184
Length = 1184
Score = 95.6 bits (48), Expect = 5e-18
Identities = 69/76 (90%)
Strand = Plus / Plus
Query: 271 gaggaggacccggccgcggccttcttggcgcagcaggagagcgagattgctggcatcgag 330
|||||||||||||| || |||||| |||| |||||||||||||||||||| ||||| |||
Sbjct: 233 gaggaggacccggcggccgccttcctggcccagcaggagagcgagattgcaggcatagag 292
Query: 331 aacgacgaggccttcg 346
|||||||||| |||||
Sbjct: 293 aacgacgagggcttcg 308
Database: UniGene(Bt+Hs+Ssc+Mm)
Posted date: Jan 30, 2004 10:32 AM
Number of letters in database: 272,110,533
Number of sequences in database: 238,354
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 1171
length of database: 272,110,533
effective HSP length: 19
effective length of query: 1152
effective length of database: 267,581,807
effective search space: 308254241664
effective search space used: 308254241664
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)