Search to UniGene2 database
Query= 20040204C-005337 (20040204C-005337) 20040204C-005337
(1041 letters)
Database: UniGene(Bt+Hs+Ssc+Mm)
238,354 sequences; 272,110,533 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gnl|UG|Hs#S17537479 Homo sapiens hypothetical protein LOC349136 ... 605 e-171
Alignment gnl|UG|Mm#S17520555 Mus musculus cDNA clone IMAGE:6825904, parti... 587 e-166
Alignment gnl|UG|Mm#S8762359 Mus musculus RIKEN cDNA 0610033N12 gene (0610... 42 0.057
Alignment gnl|UG|Mm#S14302659 Mus musculus RIKEN cDNA 9930021D14 gene (993... 42 0.057
Alignment gnl|UG|Hs#S572323 Human metalloendopeptidase homolog (PEX) mRNA,... 40 0.23
Alignment gnl|UG|Mm#S17093704 Mus musculus RIKEN cDNA 1700113K14 gene (170... 40 0.23
Alignment gnl|UG|Bt#S15645034 Bos taurus endothelin converting enzyme 1 (E... 40 0.23
Alignment gnl|UG|Hs#S4402456 UI-E-EJ1-ajz-c-15-0-UI.r1 UI-E-EJ1 Homo sapie... 38 0.89
Alignment gnl|UG|Hs#S1730954 Homo sapiens C1q-related factor (CRF), mRNA /... 38 0.89
Alignment gnl|UG|Hs#S3602319 Homo sapiens histone deacetylase 10 (HDAC10),... 38 0.89
>gnl|UG|Hs#S17537479 Homo sapiens hypothetical protein LOC349136
(LOC349136), mRNA /cds=(284,1117) /gb=NM_198285
/gi=38093662 /ug=Hs.174373 /len=1348
Length = 1348
Score = 605 bits (305), Expect = e-171
Identities = 452/501 (90%)
Strand = Plus / Plus
Query: 541 aaggacatgaaagctacgtgaccttctgccagctggaggacgaagctgccttcacgtgca 600
||||||| |||||||| ||||||||||||||||||||||| || ||||||||||| ||||
Sbjct: 60 aaggacacgaaagctatgtgaccttctgccagctggaggatgaggctgccttcacatgca 119
Query: 601 gcgctgactgcaccatccggaagtgggacgtgctgaccgggcagtgtctgcaggtgttcc 660
|||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 120 gcgccgactgcaccatcaggaggtgggacgtgctgaccgggcagtgtctgcaggtgtacc 179
Query: 661 ggggacacacatccattgtgaacaggatcctggtcaccaacaaccagctcttcagcagtt 720
| |||||||| ||||| ||||||||||||||||| |||||||||||||||||||||| |
Sbjct: 180 gaggacacacgtccatcgtgaacaggatcctggttgccaacaaccagctcttcagcagct 239
Query: 721 cctatgaccggacagctcgcgcctggagtgtagacaaagggcaggtgtcgcgggagttcc 780
||||||||||||||||||| | ||||||||| ||||| |||||| |||| ||||||||||
Sbjct: 240 cctatgaccggacagctcgggtctggagtgtggacaaggggcagatgtcccgggagttcc 299
Query: 781 ggggccaccgcaactgtgtgctgactctagcctactctgccccctgggacctgcctgggg 840
|||||||||||||||| |||||||| ||||||||||||||||| |||||||| || |
Sbjct: 300 ggggccaccgcaactgcgtgctgaccctagcctactctgccccgtgggacctccccagca 359
Query: 841 ctccctgcgtggaggaggccgtggctggggggcttctggtgacgggaagcacagacggca 900
||||||||| ||||||||||| ||| ||||||||||||||||| || |||||||| ||||
Sbjct: 360 ctccctgcgcggaggaggccgcggccggggggcttctggtgaccggcagcacagatggca 419
Query: 901 cagccaaggtgtggcaagtggccagtggctgctgccaccagacgctgcggggccacacgg 960
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 420 cagccaaggtgtggcaggtggccagcggctgctgccaccagacgctgcggggccacacgg 479
Query: 961 gcgccgtgctctgcctggtgttggacacacctgggcacacagccttcaccggcagcaccg 1020
| || ||||| ||||| ||| | ||||| || || ||||| |||||||| ||||||||||
Sbjct: 480 gtgcagtgctgtgcctagtgctagacacgcccggccacacggccttcacaggcagcaccg 539
Query: 1021 acgccaccatccgcgcctggg 1041
||||||||||||| |||||||
Sbjct: 540 acgccaccatccgtgcctggg 560
>gnl|UG|Mm#S17520555 Mus musculus cDNA clone IMAGE:6825904, partial
cds /gb=BC059069 /gi=37748165 /ug=Mm.269989 /len=4377
Length = 4377
Score = 587 bits (296), Expect = e-166
Identities = 515/588 (87%)
Strand = Plus / Plus
Query: 393 gggtctgccctgagggtctgcgcggaccaccgcgggggcatcaactggctcagcctgagc 452
||||| || ||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 350 gggtcggctctgagggtctgtgcggaccaccgcgggggcatcaactggctgagcctgagc 409
Query: 453 cccgacgggcagcgcctgctgacgggcagcgaggacggcaccgcccggctctggagcacc 512
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 410 cccgacgggcagcgcctgctgacgggcagcgaggacggcacagcccgcctctggagcacc 469
Query: 513 gcggacggccagtgctgcgccctcctgcaaggacatgaaagctacgtgaccttctgccag 572
| |||||||||||||||||| ||||| ||||||||||| ||||| ||||||||||| ||
Sbjct: 470 gtggacggccagtgctgcgcgctccttcaaggacatgagagctatgtgaccttctgtcac 529
Query: 573 ctggaggacgaagctgccttcacgtgcagcgctgactgcaccatccggaagtgggacgtg 632
|||||||| |||||||||||||| || || ||||||||||||||||||| |||||| |||
Sbjct: 530 ctggaggatgaagctgccttcacctgtagtgctgactgcaccatccggaggtgggatgtg 589
Query: 633 ctgaccgggcagtgtctgcaggtgttccggggacacacatccattgtgaacaggatcctg 692
||| ||||||||||||||||||| | | |||||||||||||||||||||||||||||
Sbjct: 590 aggacggggcagtgtctgcaggtgtacagaggacacacatccattgtgaacaggatccta 649
Query: 693 gtcaccaacaaccagctcttcagcagttcctatgaccggacagctcgcgcctggagtgta 752
|| |||| ||||||||||||||||||||||||| ||||||||||| | |||| |||
Sbjct: 650 gttgccaatgaccagctcttcagcagttcctatgatcggacagctcgtgtgtggactgtg 709
Query: 753 gacaaagggcaggtgtcgcgggagttccggggccaccgcaactgtgtgctgactctagcc 812
||||||||||| ||||| | ||||||||||||||||| |||||||| ||||| ||||||
Sbjct: 710 gacaaagggcaagtgtcccaagagttccggggccaccgtaactgtgtactgacactagcc 769
Query: 813 tactctgccccctgggacctgcctggggctccctgcgtggaggaggccgtggctgggggg 872
|||||||| ||| ||||||||| | ||||||| |||||| ||| ||| ||| |||
Sbjct: 770 tactctgctcccgaggacctgccccaagatccctgcatggaggcagccatgggtggtggg 829
Query: 873 cttctggtgacgggaagcacagacggcacagccaaggtgtggcaagtggccagtggctgc 932
|| || ||||| || ||| |||| | ||||||||| |||||||| || ||||||||||||
Sbjct: 830 ctcctagtgactggcagctcagatgacacagccaaagtgtggcaggtagccagtggctgc 889
Query: 933 tgccaccagacgctgcggggccacacgggcgccgtgctctgcctggtg 980
||||||||||| || ||||||||||| || || ||||| |||||||||
Sbjct: 890 tgccaccagactcttcggggccacacaggtgcagtgctgtgcctggtg 937
>gnl|UG|Mm#S8762359 Mus musculus RIKEN cDNA 0610033N12 gene
(0610033N12Rik), mRNA /cds=(99,1079) /gb=NM_019988
/gi=31542884 /ug=Mm.289516 /len=3361
Length = 3361
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 857 ggccgtggctggggggcttct 877
|||||||||||||||||||||
Sbjct: 2720 ggccgtggctggggggcttct 2700
>gnl|UG|Mm#S14302659 Mus musculus RIKEN cDNA 9930021D14 gene
(9930021D14Rik), mRNA /cds=(339,863) /gb=NM_175682
/gi=31342317 /ug=Mm.258355 /len=998
Length = 998
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 857 ggccgtggctggggggcttct 877
|||||||||||||||||||||
Sbjct: 311 ggccgtggctggggggcttct 331
>gnl|UG|Hs#S572323 Human metalloendopeptidase homolog (PEX) mRNA,
complete sequence /cds=(604,2853) /gb=U82970 /gi=1778835
/ug=Hs.72874 /len=3130
Length = 3130
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 694 tcaccaacaaccagctcttc 713
||||||||||||||||||||
Sbjct: 2636 tcaccaacaaccagctcttc 2655
>gnl|UG|Mm#S17093704 Mus musculus RIKEN cDNA 1700113K14 gene
(1700113K14Rik), mRNA /cds=(151,1278) /gb=NM_198000
/gi=37574089 /ug=Mm.34166 /len=1423
Length = 1423
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 179 cgggtcccccgagtccccga 198
||||||||||||||||||||
Sbjct: 333 cgggtcccccgagtccccga 352
>gnl|UG|Bt#S15645034 Bos taurus endothelin converting enzyme 1 (ECE1),
mRNA /cds=(118,2394) /gb=NM_181009 /gi=31341344
/ug=Bt.4378 /len=2889
Length = 2889
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 694 tcaccaacaaccagctcttc 713
||||||||||||||||||||
Sbjct: 2180 tcaccaacaaccagctcttc 2199
>gnl|UG|Hs#S4402456 UI-E-EJ1-ajz-c-15-0-UI.r1 UI-E-EJ1 Homo sapiens
cDNA clone UI-E-EJ1-ajz-c-15-0-UI 5', mRNA sequence
/clone=UI-E-EJ1-ajz-c-15-0-UI /clone_end=5' /gb=BQ187114
/gi=20362665 /ti=151810197 /ug=Hs.442685 /len=1104
Length = 1104
Score = 38.2 bits (19), Expect = 0.89
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 105 cctccgctggagggactga 123
|||||||||||||||||||
Sbjct: 222 cctccgctggagggactga 204
>gnl|UG|Hs#S1730954 Homo sapiens C1q-related factor (CRF), mRNA
/cds=(229,1005) /gb=NM_006688 /gi=34222385 /ug=Hs.134012
/len=1517
Length = 1517
Score = 38.2 bits (19), Expect = 0.89
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 259 ccggcgccggggccccgcg 277
|||||||||||||||||||
Sbjct: 356 ccggcgccggggccccgcg 338
>gnl|UG|Hs#S3602319 Homo sapiens histone deacetylase 10 (HDAC10),
mRNA /cds=(354,2363) /gb=NM_032019 /gi=20070353
/ug=Hs.26593 /len=2420
Length = 2420
Score = 38.2 bits (19), Expect = 0.89
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 823 cctgggacctgcctggggc 841
|||||||||||||||||||
Sbjct: 261 cctgggacctgcctggggc 243
Database: UniGene(Bt+Hs+Ssc+Mm)
Posted date: Jan 30, 2004 10:32 AM
Number of letters in database: 272,110,533
Number of sequences in database: 238,354
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 1041
length of database: 272,110,533
effective HSP length: 19
effective length of query: 1022
effective length of database: 267,581,807
effective search space: 273468606754
effective search space used: 273468606754
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)