Search to UniGene2 database
Query= 20040204S-004895 (20040204S-004895) 20040204S-004895
(1190 letters)
Database: UniGene(Bt+Hs+Ssc+Mm)
238,354 sequences; 272,110,533 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gnl|UG|Ssc#S18261141 BP157632 full-length enriched swine cDNA li... 291 4e-77
Alignment gnl|UG|Hs#S1728085 Homo sapiens tropomyosin 4 (TPM4), mRNA /cds=... 220 1e-55
Alignment gnl|UG|Mm#S11102429 Mus musculus tropomyosin 4, mRNA (cDNA clone... 161 1e-37
Alignment gnl|UG|Hs#S7112518 Homo sapiens similar to tropomyosin 4 (LOC285... 103 2e-20
Alignment gnl|UG|Hs#S17085918 Homo sapiens similar to tropomyosin 4 (LOC37... 101 8e-20
Alignment gnl|UG|Hs#S4189515 AGENCOURT_6553898 NIH_MGC_71 Homo sapiens cDN... 66 5e-09
Alignment gnl|UG|Hs#S4071170 AGENCOURT_6562996 NIH_MGC_67 Homo sapiens cDN... 66 5e-09
Alignment gnl|UG|Hs#S5978838 Homo sapiens tropomyosin 3 (TPM3), mRNA /cds=... 66 5e-09
Alignment gnl|UG|Ssc#S18290017 BP141742 full-length enriched swine cDNA li... 66 5e-09
Alignment gnl|UG|Hs#S4410809 AGENCOURT_7560686 NIH_MGC_72 Homo sapiens cDN... 52 7e-05
>gnl|UG|Ssc#S18261141 BP157632 full-length enriched swine cDNA
library, adult spleen Sus scrofa cDNA clone SPL010001C12
5', mRNA sequence /clone=SPL010001C12 /clone_end=5'
/gb=BP157632 /gi=40407105 /ug=Ssc.12963 /len=938
Length = 938
Score = 291 bits (147), Expect = 4e-77
Identities = 198/215 (92%)
Strand = Plus / Plus
Query: 117 atggctggcctcaactccctggaggcggtgaaacgcaagatccaggtcctgcagcagcag 176
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 63 atggctggcctcaactccctggaggcggtgaaacgcaagatccaggccctgcagcagcag 122
Query: 177 gcggacgaggcagaagatcgcgcgcacggcctgcaccgggagctggacggcgagcgcgag 236
|||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 123 gcggacgaggcagaggatcgcgcgcagggcctgcagcgggagctggacggcgagcgcgag 182
Query: 237 cggcgtgagaaagccgaaagggaagtagcacctctcactcgccgcatccaactcgctgat 296
||||| |||||||||||| |||| |||||| |||||| ||| ||||||||||||| |||
Sbjct: 183 cggcgggagaaagccgaaggggatgtagcagctctcaatcggcgcatccaactcgttgag 242
Query: 297 gaggacttggatttggctcatgaacgactggccac 331
||||| ||||| |||||| ||||||||||||||
Sbjct: 243 gaggagttggacagggctcaggaacgactggccac 277
>gnl|UG|Hs#S1728085 Homo sapiens tropomyosin 4 (TPM4), mRNA
/cds=(51,797) /gb=NM_003290 /gi=4507650 /ug=Hs.250641
/len=2049
Length = 2049
Score = 220 bits (111), Expect = 1e-55
Identities = 189/215 (87%)
Strand = Plus / Plus
Query: 117 atggctggcctcaactccctggaggcggtgaaacgcaagatccaggtcctgcagcagcag 176
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 51 atggccggcctcaactccctggaggcggtgaaacgcaagatccaggccctgcagcagcag 110
Query: 177 gcggacgaggcagaagatcgcgcgcacggcctgcaccgggagctggacggcgagcgcgag 236
||||||||||| ||||| |||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 111 gcggacgaggcggaagaccgcgcgcagggcctgcagcgggagctggacggcgagcgcgag 170
Query: 237 cggcgtgagaaagccgaaagggaagtagcacctctcactcgccgcatccaactcgctgat 296
||||| |||||||| ||| | || || || | |||| || |||||||| |||| |||
Sbjct: 171 cggcgcgagaaagctgaaggtgatgtggccgccctcaaccgacgcatccagctcgttgag 230
Query: 297 gaggacttggatttggctcatgaacgactggccac 331
||||| ||||| |||||| ||||||||||||||
Sbjct: 231 gaggagttggacagggctcaggaacgactggccac 265
>gnl|UG|Mm#S11102429 Mus musculus tropomyosin 4, mRNA (cDNA clone
IMAGE:5345587), with apparent retained intron
/gb=BC023701 /gi=23958443 /ug=Mm.295124 /len=2118
Length = 2118
Score = 161 bits (81), Expect = 1e-37
Identities = 150/173 (86%)
Strand = Plus / Plus
Query: 117 atggctggcctcaactccctggaggcggtgaaacgcaagatccaggtcctgcagcagcag 176
||||| ||||||||||| |||||||| ||||| ||||||||||||| |||||||||||||
Sbjct: 38 atggccggcctcaactcactggaggcagtgaagcgcaagatccaggccctgcagcagcag 97
Query: 177 gcggacgaggcagaagatcgcgcgcacggcctgcaccgggagctggacggcgagcgcgag 236
|| ||||| ||||| ||||||||||| |||||||| || || ||||| ||||||||||||
Sbjct: 98 gcagacgacgcagaggatcgcgcgcaaggcctgcagcgcgaactggatggcgagcgcgag 157
Query: 237 cggcgtgagaaagccgaaagggaagtagcacctctcactcgccgcatccaact 289
||||| |||||||| ||| | || | ||| |||||| ||||||||||||||
Sbjct: 158 cggcgcgagaaagctgaaggagatgcagccgctctcaaccgccgcatccaact 210
>gnl|UG|Hs#S7112518 Homo sapiens similar to tropomyosin 4
(LOC285321), mRNA /cds=(1,744) /gb=XM_208313
/gi=37550021 /ug=Hs.449194 /len=1349
Length = 1349
Score = 103 bits (52), Expect = 2e-20
Identities = 114/134 (85%), Gaps = 3/134 (2%)
Strand = Plus / Plus
Query: 117 atggctggcctcaactccctggaggcggtgaaacgcaagatccaggtcctgcagcagcag 176
||||| ||||||| || ||||||||| ||||||||| ||||| ||| |||||||||||||
Sbjct: 1 atggccggcctcagctacctggaggcagtgaaacgccagatctaggccctgcagcagcag 60
Query: 177 gcggacgaggcagaagatcgcgcgcacggcctgcaccgggagctggacggcgagcgcgag 236
||||||||||| |||| ||| || |||||||| |||||||||| ||| ||| | |||
Sbjct: 61 gcggacgaggcgtaagaccgc---cagggcctgcagcgggagctgggcggtgagtgtgag 117
Query: 237 cggcgtgagaaagc 250
||||| ||||||||
Sbjct: 118 cggcgcgagaaagc 131
>gnl|UG|Hs#S17085918 Homo sapiens similar to tropomyosin 4
(LOC375670), mRNA /cds=(1,648) /gb=XM_351784
/gi=37556017 /ug=Hs.447786 /len=648
Length = 648
Score = 101 bits (51), Expect = 8e-20
Identities = 151/182 (82%), Gaps = 3/182 (1%)
Strand = Plus / Plus
Query: 151 gcaagatccaggtcc-tgcagcagcaggcggacgaggcagaagatcgcgcgcacggcctg 209
|||||||||||| || ||||| |||||||||||||||| ||||| ||||| | ||||||
Sbjct: 3 gcaagatccaggcccctgcagtagcaggcggacgaggcggaagaccgcgc--agggcctg 60
Query: 210 caccgggagctggacggcgagcgcgagcggcgtgagaaagccgaaagggaagtagcacct 269
|| ||||||||||||||| |||||||| |||| |||||||| ||| | || || || |
Sbjct: 61 cagcgggagctggacggcaagcgcgagtggcgcgagaaagctgaaggtgatgtggccacc 120
Query: 270 ctcactcgccgcatccaactcgctgatgaggacttggatttggctcatgaacgactggcc 329
|||| || |||||||| |||| ||| ||||| ||||| |||||| ||||||||||||
Sbjct: 121 ctcaaccgacgcatccagctcgttgaggaggagttggacagggctcaggaacgactggcc 180
Query: 330 ac 331
||
Sbjct: 181 ac 182
>gnl|UG|Hs#S4189515 AGENCOURT_6553898 NIH_MGC_71 Homo sapiens cDNA
clone IMAGE:5555842 5', mRNA sequence
/clone=IMAGE:5555842 /clone_end=5' /gb=BM806404
/gi=19123227 /ti=115590606 /ug=Hs.526512 /len=1219
Length = 1219
Score = 65.9 bits (33), Expect = 5e-09
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 138 gaggcggtgaaacgcaagatccaggtcctgcagcagcaggc 178
||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 143 gaggcggtgaagcgcaagatccaggttctgcagcagcaggc 183
>gnl|UG|Hs#S4071170 AGENCOURT_6562996 NIH_MGC_67 Homo sapiens cDNA
clone IMAGE:5551267 5', mRNA sequence
/clone=IMAGE:5551267 /clone_end=5' /gb=BM559153
/gi=18802502 /ti=114929387 /ug=Hs.448810 /len=1081
Length = 1081
Score = 65.9 bits (33), Expect = 5e-09
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 138 gaggcggtgaaacgcaagatccaggtcctgcagcagcaggc 178
||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 100 gaggcggtgaagcgcaagatccaggttctgcagcagcaggc 140
>gnl|UG|Hs#S5978838 Homo sapiens tropomyosin 3 (TPM3), mRNA
/cds=(43,789) /gb=NM_153649 /gi=39725631 /ug=Hs.178468
/len=2080
Length = 2080
Score = 65.9 bits (33), Expect = 5e-09
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 138 gaggcggtgaaacgcaagatccaggtcctgcagcagcaggc 178
||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 64 gaggcggtgaagcgcaagatccaggttctgcagcagcaggc 104
>gnl|UG|Ssc#S18290017 BP141742 full-length enriched swine cDNA
library, adult ovary Sus scrofa cDNA clone OVR010020B02
5', mRNA sequence /clone=OVR010020B02 /clone_end=5'
/gb=BP141742 /gi=40391213 /ug=Ssc.1829 /len=955
Length = 955
Score = 65.9 bits (33), Expect = 5e-09
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 138 gaggcggtgaaacgcaagatccaggtcctgcagcagcaggc 178
||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 89 gaggcggtgaagcgcaagatccaggttctgcagcagcaggc 129
>gnl|UG|Hs#S4410809 AGENCOURT_7560686 NIH_MGC_72 Homo sapiens cDNA
clone IMAGE:6048225 5', mRNA sequence
/clone=IMAGE:6048225 /clone_end=5' /gb=BQ217671
/gi=20399071 /ti=121457155 /ug=Hs.505712 /len=1049
Length = 1049
Score = 52.0 bits (26), Expect = 7e-05
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 145 tgaaacgcaagatccaggtcctgcagcagcaggc 178
|||| |||||||||||||| ||||||||||||||
Sbjct: 184 tgaagcgcaagatccaggttctgcagcagcaggc 217
Database: UniGene(Bt+Hs+Ssc+Mm)
Posted date: Jan 30, 2004 10:32 AM
Number of letters in database: 272,110,533
Number of sequences in database: 238,354
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 1190
length of database: 272,110,533
effective HSP length: 19
effective length of query: 1171
effective length of database: 267,581,807
effective search space: 313338295997
effective search space used: 313338295997
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)