Search to UniGene2 database
Query= 20040204S-018717 (20040204S-018717) 20040204S-018717
(736 letters)
Database: UniGene(Bt+Hs+Ssc+Mm)
238,354 sequences; 272,110,533 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gnl|UG|Hs#S3619678 Homo sapiens MEGF10 protein (MEGF10), mRNA /c... 220 8e-56
Alignment gnl|UG|Mm#S11092317 Mus musculus similar to MEGF10 protein (LOC2... 167 1e-39
Alignment gnl|UG|Mm#S10828667 Mus musculus RIKEN cDNA 2410080H04 gene (241... 52 4e-05
Alignment gnl|UG|Hs#S17821006 Homo sapiens lipoma HMGIC fusion partner-lik... 42 0.040
Alignment gnl|UG|Hs#S1727312 Homo sapiens phosphodiesterase 1B, calmodulin... 40 0.16
Alignment gnl|UG|Hs#S3619679 Homo sapiens MEGF11 protein (MEGF11), mRNA /c... 40 0.16
Alignment gnl|UG|Mm#S10865554 Mus musculus 3 days neonate thymus cDNA, RIK... 40 0.16
Alignment gnl|UG|Hs#S5953045 AGENCOURT_10424001 NIH_MGC_79 Homo sapiens cD... 38 0.63
Alignment gnl|UG|Mm#S16443426 maj08b05.y1 McCarrey Eddy round spermatid Mu... 38 0.63
Alignment gnl|UG|Mm#S8762887 Mus musculus pecanex homolog (Drosophila) (Pc... 38 0.63
>gnl|UG|Hs#S3619678 Homo sapiens MEGF10 protein (MEGF10), mRNA
/cds=(204,3626) /gb=NM_032446 /gi=14192942 /ug=Hs.438709
/len=7522
Length = 7522
Score = 220 bits (111), Expect = 8e-56
Identities = 138/147 (93%)
Strand = Plus / Plus
Query: 325 tcaggtgtccactgtgacagcgtgtgtgctgagggtcgctggggccccaactgctccctg 384
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1893 tcaggtgtccactgtgacagcgtgtgtgctgagggacgctggggccccaactgctccctg 1952
Query: 385 ccctgctactgtaaaaacggggcttcgtgctccccggatgacggcatctgtgagtgtgca 444
||||||||||||||||| |||||||| |||||||| ||||| |||||||| |||||||||
Sbjct: 1953 ccctgctactgtaaaaatggggcttcatgctcccctgatgatggcatctgcgagtgtgca 2012
Query: 445 ccggggttccgaggcaccacctgtcag 471
|| || |||||||||||||| ||||||
Sbjct: 2013 ccaggcttccgaggcaccacttgtcag 2039
>gnl|UG|Mm#S11092317 Mus musculus similar to MEGF10 protein
(LOC240312), mRNA /cds=(1,2082) /gb=XM_140362
/gi=38083893 /ug=Mm.297547 /len=2082
Length = 2082
Score = 167 bits (84), Expect = 1e-39
Identities = 123/136 (90%)
Strand = Plus / Plus
Query: 329 gtgtccactgtgacagcgtgtgtgctgagggtcgctggggccccaactgctccctgccct 388
|||| ||||||||||| ||||| |||||||| |||||||| || |||||||| |||||||
Sbjct: 266 gtgtgcactgtgacagtgtgtgcgctgagggacgctggggtcctaactgctcgctgccct 325
Query: 389 gctactgtaaaaacggggcttcgtgctccccggatgacggcatctgtgagtgtgcaccgg 448
||||||||||||| ||||||||||| || |||||||| |||||||||||||||||||| |
Sbjct: 326 gctactgtaaaaatggggcttcgtgttctccggatgatggcatctgtgagtgtgcacccg 385
Query: 449 ggttccgaggcaccac 464
| ||||||||||||||
Sbjct: 386 gattccgaggcaccac 401
>gnl|UG|Mm#S10828667 Mus musculus RIKEN cDNA 2410080H04 gene
(2410080H04Rik), mRNA /cds=(147,2990) /gb=NM_172522
/gi=27369721 /ug=Mm.127721 /len=3568
Length = 3568
Score = 52.0 bits (26), Expect = 4e-05
Identities = 71/86 (82%)
Strand = Plus / Plus
Query: 358 ggtcgctggggccccaactgctccctgccctgctactgtaaaaacggggcttcgtgctcc 417
|||||||||||||||||||| || || ||||| |||| | ||||| | ||| ||||||
Sbjct: 1755 ggtcgctggggccccaactgttcagtgtcctgcagctgtgagaacggaggttcctgctcc 1814
Query: 418 ccggatgacggcatctgtgagtgtgc 443
||||| ||||| | ||| ||||||||
Sbjct: 1815 ccggaggacgggagctgcgagtgtgc 1840
>gnl|UG|Hs#S17821006 Homo sapiens lipoma HMGIC fusion partner-like
protein 4 (LOC375323), mRNA /cds=(287,1030) /gb=NM_198560
/gi=38348397 /ug=Hs.331437 /len=1444
Length = 1444
Score = 42.1 bits (21), Expect = 0.040
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 20 cccttgggcttctcctctgctctct 44
|||||||||||||||||| ||||||
Sbjct: 1288 cccttgggcttctcctctcctctct 1312
>gnl|UG|Hs#S1727312 Homo sapiens phosphodiesterase 1B,
calmodulin-dependent (PDE1B), mRNA /cds=(167,1777)
/gb=NM_000924 /gi=24431942 /ug=Hs.512605 /len=3236
Length = 3236
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 22 cttgggcttctcctctgctc 41
||||||||||||||||||||
Sbjct: 529 cttgggcttctcctctgctc 510
>gnl|UG|Hs#S3619679 Homo sapiens MEGF11 protein (MEGF11), mRNA
/cds=(160,3069) /gb=NM_032445 /gi=14192940 /ug=Hs.132268
/len=5702
Length = 5702
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 361 cgctggggccccaactgctc 380
||||||||||||||||||||
Sbjct: 1642 cgctggggccccaactgctc 1661
>gnl|UG|Mm#S10865554 Mus musculus 3 days neonate thymus cDNA, RIKEN
full-length enriched library, clone:A630046L02
product:unknown EST, full insert sequence /gb=AK041916
/gi=26088727 /ug=Mm.102779 /len=1795
Length = 1795
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 65 aatataacaaagaaatttta 84
||||||||||||||||||||
Sbjct: 1350 aatataacaaagaaatttta 1331
>gnl|UG|Hs#S5953045 AGENCOURT_10424001 NIH_MGC_79 Homo sapiens cDNA
clone IMAGE:6663808 5', mRNA sequence
/clone=IMAGE:6663808 /clone_end=5' /gb=BU929781
/gi=24118511 /ug=Hs.501468 /len=790
Length = 790
Score = 38.2 bits (19), Expect = 0.63
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 99 gccatagaaaatagtgctg 117
|||||||||||||||||||
Sbjct: 438 gccatagaaaatagtgctg 456
>gnl|UG|Mm#S16443426 maj08b05.y1 McCarrey Eddy round spermatid Mus
musculus cDNA clone IMAGE:6940930 5', mRNA sequence
/clone=IMAGE:6940930 /clone_end=5' /gb=CF105721
/gi=33144788 /ug=Mm.318816 /len=596
Length = 596
Score = 38.2 bits (19), Expect = 0.63
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 528 tctgcccctcaattcacag 546
|||||||||||||||||||
Sbjct: 52 tctgcccctcaattcacag 70
>gnl|UG|Mm#S8762887 Mus musculus pecanex homolog (Drosophila) (Pcnx),
mRNA /cds=(867,5207) /gb=NM_018814 /gi=9055259
/ug=Mm.86584 /len=6169
Length = 6169
Score = 38.2 bits (19), Expect = 0.63
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 710 ccttcctgggcagcgccat 728
|||||||||||||||||||
Sbjct: 2689 ccttcctgggcagcgccat 2707
Database: UniGene(Bt+Hs+Ssc+Mm)
Posted date: Jan 30, 2004 10:32 AM
Number of letters in database: 272,110,533
Number of sequences in database: 238,354
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 736
length of database: 272,110,533
effective HSP length: 19
effective length of query: 717
effective length of database: 267,581,807
effective search space: 191856155619
effective search space used: 191856155619
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)