Search to UniGene2 database
Query= 20040204S-018794 (20040204S-018794) 20040204S-018794
(366 letters)
Database: UniGene(Bt+Hs+Ssc+Mm)
238,354 sequences; 272,110,533 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gnl|UG|Ssc#S18261141 BP157632 full-length enriched swine cDNA li... 242 1e-62
Alignment gnl|UG|Hs#S1728085 Homo sapiens tropomyosin 4 (TPM4), mRNA /cds=... 188 1e-46
Alignment gnl|UG|Mm#S11102429 Mus musculus tropomyosin 4, mRNA (cDNA clone... 145 2e-33
Alignment gnl|UG|Hs#S7112518 Homo sapiens similar to tropomyosin 4 (LOC285... 86 1e-15
Alignment gnl|UG|Hs#S17085918 Homo sapiens similar to tropomyosin 4 (LOC37... 86 1e-15
Alignment gnl|UG|Hs#S4189515 AGENCOURT_6553898 NIH_MGC_71 Homo sapiens cDN... 56 1e-06
Alignment gnl|UG|Hs#S4071170 AGENCOURT_6562996 NIH_MGC_67 Homo sapiens cDN... 56 1e-06
Alignment gnl|UG|Hs#S5978838 Homo sapiens tropomyosin 3 (TPM3), mRNA /cds=... 56 1e-06
Alignment gnl|UG|Ssc#S18290017 BP141742 full-length enriched swine cDNA li... 56 1e-06
Alignment gnl|UG|Hs#S4410809 AGENCOURT_7560686 NIH_MGC_72 Homo sapiens cDN... 48 3e-04
>gnl|UG|Ssc#S18261141 BP157632 full-length enriched swine cDNA
library, adult spleen Sus scrofa cDNA clone SPL010001C12
5', mRNA sequence /clone=SPL010001C12 /clone_end=5'
/gb=BP157632 /gi=40407105 /ug=Ssc.12963 /len=938
Length = 938
Score = 242 bits (122), Expect = 1e-62
Identities = 140/146 (95%)
Strand = Plus / Plus
Query: 126 atggctggcctcaactccctggaggcggtgagacgcaagatccaggccctgcagcagcag 185
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 63 atggctggcctcaactccctggaggcggtgaaacgcaagatccaggccctgcagcagcag 122
Query: 186 gcggacgaggcagaggatctcgcgcacggcctgcagtgggagctggacggcgatcgcgag 245
||||||||||||||||||| |||||| ||||||||| |||||||||||||||| ||||||
Sbjct: 123 gcggacgaggcagaggatcgcgcgcagggcctgcagcgggagctggacggcgagcgcgag 182
Query: 246 cggtgggagaaagccgaaggggatgt 271
||| ||||||||||||||||||||||
Sbjct: 183 cggcgggagaaagccgaaggggatgt 208
>gnl|UG|Hs#S1728085 Homo sapiens tropomyosin 4 (TPM4), mRNA
/cds=(51,797) /gb=NM_003290 /gi=4507650 /ug=Hs.250641
/len=2049
Length = 2049
Score = 188 bits (95), Expect = 1e-46
Identities = 134/147 (91%)
Strand = Plus / Plus
Query: 126 atggctggcctcaactccctggaggcggtgagacgcaagatccaggccctgcagcagcag 185
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 51 atggccggcctcaactccctggaggcggtgaaacgcaagatccaggccctgcagcagcag 110
Query: 186 gcggacgaggcagaggatctcgcgcacggcctgcagtgggagctggacggcgatcgcgag 245
||||||||||| || || | |||||| ||||||||| |||||||||||||||| ||||||
Sbjct: 111 gcggacgaggcggaagaccgcgcgcagggcctgcagcgggagctggacggcgagcgcgag 170
Query: 246 cggtgggagaaagccgaaggggatgtg 272
||| | |||||||| ||||| ||||||
Sbjct: 171 cggcgcgagaaagctgaaggtgatgtg 197
>gnl|UG|Mm#S11102429 Mus musculus tropomyosin 4, mRNA (cDNA clone
IMAGE:5345587), with apparent retained intron
/gb=BC023701 /gi=23958443 /ug=Mm.295124 /len=2118
Length = 2118
Score = 145 bits (73), Expect = 2e-33
Identities = 127/145 (87%)
Strand = Plus / Plus
Query: 126 atggctggcctcaactccctggaggcggtgagacgcaagatccaggccctgcagcagcag 185
||||| ||||||||||| |||||||| |||| |||||||||||||||||||||||||||
Sbjct: 38 atggccggcctcaactcactggaggcagtgaagcgcaagatccaggccctgcagcagcag 97
Query: 186 gcggacgaggcagaggatctcgcgcacggcctgcagtgggagctggacggcgatcgcgag 245
|| ||||| |||||||||| |||||| ||||||||| | || ||||| ||||| ||||||
Sbjct: 98 gcagacgacgcagaggatcgcgcgcaaggcctgcagcgcgaactggatggcgagcgcgag 157
Query: 246 cggtgggagaaagccgaaggggatg 270
||| | |||||||| ||||| ||||
Sbjct: 158 cggcgcgagaaagctgaaggagatg 182
>gnl|UG|Hs#S7112518 Homo sapiens similar to tropomyosin 4
(LOC285321), mRNA /cds=(1,744) /gb=XM_208313
/gi=37550021 /ug=Hs.449194 /len=1349
Length = 1349
Score = 85.7 bits (43), Expect = 1e-15
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 126 atggctggcctcaactccctggaggcggtgagacgcaagatccaggccctgcagcagcag 185
||||| ||||||| || ||||||||| |||| |||| ||||| |||||||||||||||||
Sbjct: 1 atggccggcctcagctacctggaggcagtgaaacgccagatctaggccctgcagcagcag 60
Query: 186 gcggacgaggc 196
|||||||||||
Sbjct: 61 gcggacgaggc 71
>gnl|UG|Hs#S17085918 Homo sapiens similar to tropomyosin 4
(LOC375670), mRNA /cds=(1,648) /gb=XM_351784
/gi=37556017 /ug=Hs.447786 /len=648
Length = 648
Score = 85.7 bits (43), Expect = 1e-15
Identities = 98/114 (85%), Gaps = 3/114 (2%)
Strand = Plus / Plus
Query: 160 gcaagatccaggccc-tgcagcagcaggcggacgaggcagaggatctcgcgcacggcctg 218
||||||||||||||| ||||| |||||||||||||||| || || | ||||| ||||||
Sbjct: 3 gcaagatccaggcccctgcagtagcaggcggacgaggcggaagacc--gcgcagggcctg 60
Query: 219 cagtgggagctggacggcgatcgcgagcggtgggagaaagccgaaggggatgtg 272
||| |||||||||||||| | |||||| || | |||||||| ||||| ||||||
Sbjct: 61 cagcgggagctggacggcaagcgcgagtggcgcgagaaagctgaaggtgatgtg 114
>gnl|UG|Hs#S4189515 AGENCOURT_6553898 NIH_MGC_71 Homo sapiens cDNA
clone IMAGE:5555842 5', mRNA sequence
/clone=IMAGE:5555842 /clone_end=5' /gb=BM806404
/gi=19123227 /ti=115590606 /ug=Hs.526512 /len=1219
Length = 1219
Score = 56.0 bits (28), Expect = 1e-06
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 147 gaggcggtgagacgcaagatccaggccctgcagcagcaggcggacgaggcagagga 202
|||||||||| ||||||||||||| |||||||||||||| || || ||||||||
Sbjct: 143 gaggcggtgaagcgcaagatccaggttctgcagcagcaggcagatgatgcagagga 198
>gnl|UG|Hs#S4071170 AGENCOURT_6562996 NIH_MGC_67 Homo sapiens cDNA
clone IMAGE:5551267 5', mRNA sequence
/clone=IMAGE:5551267 /clone_end=5' /gb=BM559153
/gi=18802502 /ti=114929387 /ug=Hs.448810 /len=1081
Length = 1081
Score = 56.0 bits (28), Expect = 1e-06
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 147 gaggcggtgagacgcaagatccaggccctgcagcagcaggcggacgaggcagagga 202
|||||||||| ||||||||||||| |||||||||||||| || || ||||||||
Sbjct: 100 gaggcggtgaagcgcaagatccaggttctgcagcagcaggcagatgatgcagagga 155
>gnl|UG|Hs#S5978838 Homo sapiens tropomyosin 3 (TPM3), mRNA
/cds=(43,789) /gb=NM_153649 /gi=39725631 /ug=Hs.178468
/len=2080
Length = 2080
Score = 56.0 bits (28), Expect = 1e-06
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 147 gaggcggtgagacgcaagatccaggccctgcagcagcaggcggacgaggcagagga 202
|||||||||| ||||||||||||| |||||||||||||| || || ||||||||
Sbjct: 64 gaggcggtgaagcgcaagatccaggttctgcagcagcaggcagatgatgcagagga 119
>gnl|UG|Ssc#S18290017 BP141742 full-length enriched swine cDNA
library, adult ovary Sus scrofa cDNA clone OVR010020B02
5', mRNA sequence /clone=OVR010020B02 /clone_end=5'
/gb=BP141742 /gi=40391213 /ug=Ssc.1829 /len=955
Length = 955
Score = 56.0 bits (28), Expect = 1e-06
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 147 gaggcggtgagacgcaagatccaggccctgcagcagcaggcggacgaggcagagga 202
|||||||||| ||||||||||||| |||||||||||||| || || ||||||||
Sbjct: 89 gaggcggtgaagcgcaagatccaggttctgcagcagcaggccgatgatgcagagga 144
>gnl|UG|Hs#S4410809 AGENCOURT_7560686 NIH_MGC_72 Homo sapiens cDNA
clone IMAGE:6048225 5', mRNA sequence
/clone=IMAGE:6048225 /clone_end=5' /gb=BQ217671
/gi=20399071 /ti=121457155 /ug=Hs.505712 /len=1049
Length = 1049
Score = 48.1 bits (24), Expect = 3e-04
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 159 cgcaagatccaggccctgcagcagcaggcggacgaggcagagga 202
||||||||||||| |||||||||||||| || || ||||||||
Sbjct: 189 cgcaagatccaggttctgcagcagcaggcagatgatgcagagga 232
Database: UniGene(Bt+Hs+Ssc+Mm)
Posted date: Jan 30, 2004 10:32 AM
Number of letters in database: 272,110,533
Number of sequences in database: 238,354
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 366
length of database: 272,110,533
effective HSP length: 18
effective length of query: 348
effective length of database: 267,820,161
effective search space: 93201416028
effective search space used: 93201416028
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)