>20050322C-000959 (20050322C-000959) 20050322C-000959 GCACTTCCTT CTTTGCTTTT AGCCGAGACG CAGGCGCAAC TCGCGGCTGC TGCGGGGATC CTTGTGACCC TTCCGGTCGG TACAGCCAAT CCGTGCACAG AGAAGCGGGG CGGACCGAGA GGAGCGGAGC GGAGGGAGCT CTTGAGAGCC ACGGCCGCCG CCACTGCCGC GGCAGGGGCG TGGAGGGCAG GGGGCGGCCC GGGCCGCGGT TGCAAACATG GCTCAAAGCA GAGATGGTGG AAACCCCTTC GCCGAGCCCG GCGAGCTTGA CAACCCCTTT CAGGACCCAG CTGTGATCCA GCACCGACCC AGCCCGCAGT ATGCCACGCT TGACGTCTAC AACCCTTTTG AGACCCGGGA GCCACCACCA AGCTATGAGC CTCCTGCCCC TGTTCCAGTT GCACCACCCT CAGCCGCCCC CTTGCAGTCC TCGAGAAAGC TCAGCCCCAC AGAACCCAAG AACTATGGTT CCTACAGCAC CCAGGCTTCA GCTGCAGCAG CCACAGCTGA ACTGCTAAAG AAGCAGGAGG AGCTCAACCG GAAGGCAGAG GAGTTGGACC GGAGGGAGCG AGAGCTGCAG CATGCTGCCC TGGGGGGCAC AGCTACTCGA CAGAACAATT GGCCTCCTCT ACCTTCGTTT TGCCCAGTTC AGCCCTGCTT CTTCCAGGAC ATCTCTATGG AGATCCCCCA AGAATTTCAG AAGACAGTAT CCACGATGTA CTACCTCTGG ATGTGCAGCA CCCTGGCTCT TCTCCTGAAT TTCCTCGCCT GCCTGGCTAG CTTCTGTGTG GAGACCAACA CTGGCTCAGG CTTCGGGCTC TCAATCCTCT GGATCCTCCT GTTCACTCCC TGCTCCTTCG TCTGCTGGTA CCGTCCCATG TATAAGGCCT TCCGGAGTGA CAGTTCATTC AATTTCTTCG TTTTCTTCTT CATTTTCTTC GTCCAGGATG TCCTATATGT TCTGCAGGCC ATTGGCATCC CAGGTTGGGG GTTCAGTGGC TGGATCTCCG CTTTGATGTT GGTGAACACC AACGCGGCTG TAGCTGTGCT TATGCTGCTG GTCGCCCTGT TCTTCACTGG CATCGCTGTG CTGGGAATTG TGATGCTAAA GCGGATCCAC TCCTTGTATC GCCGCACGGG TGCCAGCTTT CAGAAGGCCC AGCAAGAATT TGCTGCCGGT GTCTTCTCCA ACCCTGCGGT GCGAACTGCA GCTGCCAATG CAGCCGCTGG AGCTGCCGAA AATGCCTTCC GGGCCCCGTG ACCCCTGACT GGGATGCTCT GGCCCTGCCA CTTGAGGGAG CTGACCTACC CCCCATCCCT GAGGTCTCTG GGAC
Query= 20050322C-000959 (20050322C-000959) 20050322C-000959
(1334 letters)
Database: UniGene(Bt+Hs+Ssc+Mm)
151,043 sequences; 222,131,506 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gnl|UG|Hs#S1729928 Homo sapiens secretory carrier membrane prote... 1556 0.0
Alignment gnl|UG|Ssc#S6020839 74741 MARC 2PIG Sus scrofa cDNA 5', mRNA seq... 1251 0.0
Alignment gnl|UG|Bt#S11975071 255688 MARC BSM Bos taurus cDNA 5', mRNA seq... 389 e-106
Alignment gnl|UG|Mm#S8958326 602091826F1 NCI_CGAP_Co24 Mus musculus cDNA c... 341 5e-92
Alignment gnl|UG|Mm#S8712296 uu11h02.y2 Soares_mammary_gland_NMLMG Mus mus... 125 5e-27
Alignment gnl|UG|Hs#S4614666 Homo sapiens cDNA FLJ39475 fis, clone PROST20... 44 0.015
Alignment gnl|UG|Mm#S8762461 Mus musculus secretory carrier membrane prote... 44 0.015
Alignment gnl|UG|Hs#S4615551 Homo sapiens cDNA FLJ38577 fis, clone HCHON20... 42 0.060
Alignment gnl|UG|Ssc#S6014313 359231 MARC 1PIG Sus scrofa cDNA 5', mRNA se... 42 0.060
Alignment gnl|UG|Mm#S21695874 PREDICTED: Mus musculus LOC433343 (LOC433343... 40 0.24
>gnl|UG|Hs#S1729928 Homo sapiens secretory carrier membrane protein 3
(SCAMP3), transcript variant 1, mRNA /cds=p(254,1297)
/gb=NM_005698 /gi=16445418 /ug=Hs.200600 /len=1614
Length = 1614
Score = 1556 bits (785), Expect = 0.0
Identities = 1079/1177 (91%)
Strand = Plus / Plus
Query: 158 ccgccactgccgcggcaggggcgtggagggcagggggcggcccgggccgcggttgcaaac 217
|||||||||| |||||||||||||||||||||| |||| || |||||| |||||||||
Sbjct: 194 ccgccactgctgcggcaggggcgtggagggcagagggccgcggaggccgcagttgcaaac 253
Query: 218 atggctcaaagcagagatggtggaaaccccttcgccgagcccggcgagcttgacaacccc 277
|||||||| |||||||| || |||||||| |||||||||||| |||||||||||||||||
Sbjct: 254 atggctcagagcagagacggcggaaacccgttcgccgagcccagcgagcttgacaacccc 313
Query: 278 tttcaggacccagctgtgatccagcaccgacccagcccgcagtatgccacgcttgacgtc 337
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 314 tttcaggacccagctgtgatccagcaccgacccagccggcagtatgccacgcttgacgtc 373
Query: 338 tacaacccttttgagacccgggagccaccaccaagctatgagcctcctgcccctgttcca 397
||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||
Sbjct: 374 tacaacccttttgagacccgggagccaccaccagcctatgagcctccagcccctgcccca 433
Query: 398 gttgcaccaccctcagccgcccccttgcagtcctcgagaaagctcagccccacagaaccc 457
| | ||||||||||| || |||||||| ||||||||||||||||||||||||||||
Sbjct: 434 ttgcctccaccctcagctccctccttgcagccctcgagaaagctcagccccacagaacct 493
Query: 458 aagaactatggttcctacagcacccaggcttcagctgcagcagccacagctgaactgcta 517
||||||||||| || |||||||| ||||| ||||||||||||||||||||||| |||||
Sbjct: 494 aagaactatggctcatacagcactcaggcctcagctgcagcagccacagctgagctgctg 553
Query: 518 aagaagcaggaggagctcaaccggaaggcagaggagttggaccggagggagcgagagctg 577
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 554 aagaaacaggaggagctcaaccggaaggcagaggagttggaccgaagggagcgagagctg 613
Query: 578 cagcatgctgccctggggggcacagctactcgacagaacaattggcctcctctaccttcg 637
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 614 cagcatgctgccctggggggcacagctactcgacagaacaattggccccctctaccttct 673
Query: 638 ttttgcccagttcagccctgcttcttccaggacatctctatggagatcccccaagaattt 697
||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 674 ttttgtccagttcagccctgctttttccaggacatctccatggagatcccccaagaattt 733
Query: 698 cagaagacagtatccacgatgtactacctctggatgtgcagcaccctggctcttctcctg 757
|||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 734 cagaagactgtatccaccatgtactacctctggatgtgcagcacgctggctcttctcctg 793
Query: 758 aatttcctcgcctgcctggctagcttctgtgtggagaccaacactggctcaggcttcggg 817
|| ||||||||||||||||| |||||||||||||| ||||||| |||| ||||||| |||
Sbjct: 794 aacttcctcgcctgcctggccagcttctgtgtggaaaccaacaatggcgcaggctttggg 853
Query: 818 ctctcaatcctctggatcctcctgttcactccctgctccttcgtctgctggtaccgtccc 877
|| || ||||||||| ||||||| ||||||||||||||||| |||||||||||||| |||
Sbjct: 854 ctttctatcctctgggtcctccttttcactccctgctcctttgtctgctggtaccgcccc 913
Query: 878 atgtataaggccttccggagtgacagttcattcaatttcttcgttttcttcttcattttc 937
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 914 atgtataaggctttccggagtgacagttcattcaatttcttcgttttcttcttcattttc 973
Query: 938 ttcgtccaggatgtcctatatgttctgcaggccattggcatcccaggttgggggttcagt 997
|||||||||||||| || | ||| || ||||||||||| |||||||||||||| ||||||
Sbjct: 974 ttcgtccaggatgtgctctttgtcctccaggccattggtatcccaggttggggattcagt 1033
Query: 998 ggctggatctccgctttgatgttggtgaacaccaacgcggctgtagctgtgcttatgctg 1057
||||||||||| ||| || || || ||| |||| | || ||| | ||||| ||||||
Sbjct: 1034 ggctggatctctgctctggtggtgccgaagggcaacacagcagtatccgtgctcatgctg 1093
Query: 1058 ctggtcgccctgttcttcactggcatcgctgtgctgggaattgtgatgctaaagcggatc 1117
|||||||||||| ||||||||||||| |||||||| |||||||| ||||| || ||||||
Sbjct: 1094 ctggtcgccctgctcttcactggcattgctgtgctaggaattgtcatgctgaaacggatc 1153
Query: 1118 cactccttgtatcgccgcacgggtgccagctttcagaaggcccagcaagaatttgctgcc 1177
|||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1154 cactccttataccgccgcacaggtgccagctttcagaaggcccagcaagaatttgctgct 1213
Query: 1178 ggtgtcttctccaaccctgcggtgcgaactgcagctgccaatgcagccgctggagctgcc 1237
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 1214 ggtgtcttctccaaccctgcggtgcgaaccgcagctgccaatgcagccgctggggctgct 1273
Query: 1238 gaaaatgccttccgggccccgtgacccctgactgggatgctctggccctgccacttgagg 1297
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 1274 gaaaatgccttccgggccccgtgacccctgactgggatgccctggccctgctacttgagg 1333
Query: 1298 gagctgacctaccccccatccctgaggtctctgggac 1334
|||||||| || | ||| ||||| |||||||||||||
Sbjct: 1334 gagctgacttagctcccgtccctaaggtctctgggac 1370
Score = 127 bits (64), Expect = 1e-27
Identities = 100/112 (89%)
Strand = Plus / Plus
Query: 1 gcacttccttctttgcttttagccgagacgcaggcgcaactcgcggctgctgcggggatc 60
|||||| | |||| |||||| | | ||||||||||||||| | |||||||||||||||||
Sbjct: 43 gcactttcgtcttagcttttggacaagacgcaggcgcaacccacggctgctgcggggatc 102
Query: 61 cttgtgacccttccggtcggtacagccaatccgtgcacagagaagcggggcg 112
|||||| |||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 103 cttgtggcccttccggtcggtggaaccaatccgtgcacagagaagcggggcg 154
>gnl|UG|Ssc#S6020839 74741 MARC 2PIG Sus scrofa cDNA 5', mRNA
sequence /clone_end=5' /gb=AW435716 /gi=6971022
/ti=470927382 /ug=Ssc.19149 /len=956
Length = 956
Score = 1251 bits (631), Expect = 0.0
Identities = 663/671 (98%), Gaps = 2/671 (0%)
Strand = Plus / Plus
Query: 115 ccgagaggagcggagcggagggagctcttgagagccacggccgccgccactgccgcggca 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 ccgagaggagcggagcggagggagctcttgagagccacggccgccgccactgccgcggca 70
Query: 175 ggggcgtggagggcagggggcggcccgggccgcggttgcaaacatggctcaaagcagaga 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 ggggcgtggagggcagggggcggcccgggccgcggttgcaaacatggctcaaagcagaga 130
Query: 235 tggtggaaaccccttcgccgagcccggcgagcttgacaacccctttcaggacccagctgt 294
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 tggtggaaaccctttcgccgagcccggcgagcttgacaacccctttcaggacccagctgt 190
Query: 295 gatccagcaccgacccagcccgcagtatgccacgcttgacgtctacaacccttttgagac 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 gatccagcaccgacccagcccgcagtatgccacgcttgacgtctacaacccttttgagac 250
Query: 355 ccgggagccaccaccaagctatgagcctcctgcccctgttccagttgcaccaccctcagc 414
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 251 ccgggagccaccaccaagctatgaggctcctgcccctgttccagttgcaccaccctcagc 310
Query: 415 cgcccccttgcagtcctcgagaaagctcagccccacagaacccaagaactatggttccta 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 cgcccccttgcagtcctcgagaaagctcagccccacagaacccaagaactatggttccta 370
Query: 475 cagcacccaggcttcagctgcagcagccacagctgaactgctaaagaagcaggaggagct 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 cagcacccaggcttcagctgcagcagccacagctgaactgctaaagaagcaggaggagct 430
Query: 535 caaccggaaggcagaggagttggaccggagggagcgagagctgcagcatgctgccctggg 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 caaccggaaggcagaggagttggaccggagggagcgagagctgcagcatgctgccctggg 490
Query: 595 gggcacagctactcgacagaacaattggcctcctctaccttcgttttg-cccagttcagc 653
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 491 gggcacagctactcgacagaacaaatggcctcctctaccttcgttttgccccagttcagc 550
Query: 654 cctgcttcttccaggacatctctatggagatcccccaagaatttcagaagacagtatcca 713
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 551 cctgcttcttccaggacatctctatggggatcccccaagaatttcagaagacaggatcca 610
Query: 714 cgatgtactacctctggat-gtgcagcaccctggctcttctcctgaatttcctcgcctgc 772
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 611 cgatgtactacctctggatggggcagcaccctggctcttctcctgaatttcctcgcctgc 670
Query: 773 ctggctagctt 783
|||||||||||
Sbjct: 671 ctggctagctt 681
>gnl|UG|Bt#S11975071 255688 MARC BSM Bos taurus cDNA 5', mRNA sequence
/clone_end=5' /gb=BF429799 /gi=11441896 /ti=480294371
/ug=Bt.3368 /len=1051
Length = 1051
Score = 389 bits (196), Expect = e-106
Identities = 273/296 (92%), Gaps = 2/296 (0%)
Strand = Plus / Plus
Query: 1039 tgtagctgtgcttatgctgctggtcgccctgttcttcactggcatcgctgtgctgggaat 1098
||||||||| || ||||||||||| ||||||||||| |||||||| ||||||||||||||
Sbjct: 89 tgtagctgtactcatgctgctggttgccctgttcttgactggcattgctgtgctgggaat 148
Query: 1099 tgtgatgctaaagcggatccactccttgtatcgccgcacgggtgccagctttcagaaggc 1158
||| ||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 149 tgttatgctgaagcggatccactctttgtatcgccgcacaggtgccagctttcagaaggc 208
Query: 1159 ccagcaagaatttgctgccggtgtcttctccaaccctgcggtgcgaactgcagctgccaa 1218
||||||||| ||||| || ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 209 ccagcaagagtttgcagctggtgtcttctccaaccctgcggtgcgaaccgcagctgccaa 268
Query: 1219 tgcagccgctggagctgccgaaaatgccttccgggccccgtgacccctgactgggatgct 1278
|||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 269 tgcagccgctggggctgcagaaaatgccttccgggccccgtgacccctaactgggatgcc 328
Query: 1279 ctggccctgccacttgagggagctgacctaccccccatccctgaggtctctgggac 1334
|||||||| |||| |||||||| || ||| |||||||||||||||||||||||||
Sbjct: 329 ctggcccttccac-tgagggaggcga-ctagcccccatccctgaggtctctgggac 382
>gnl|UG|Mm#S8958326 602091826F1 NCI_CGAP_Co24 Mus musculus cDNA
clone IMAGE:4206270 5'. /clone=IMAGE:4206270
/clone_end=5' /gb=BF577981 /gi=11651706 /ti=44114069
/ug=Mm.257052 /len=1510
Length = 1510
Score = 341 bits (172), Expect = 5e-92
Identities = 344/396 (86%), Gaps = 4/396 (1%)
Strand = Plus / Plus
Query: 425 cagtcctcgagaaagctcagccccacagaacccaagaactatggttcctacagcacccag 484
|||||||| |||||||||||||||||||| |||| |||||| || |||||||||||||||
Sbjct: 297 cagtcctcaagaaagctcagccccacagagcccaggaactacggctcctacagcacccag 356
Query: 485 gcttcagctgcagcagccacagctgaactgctaaagaagcaggaggagctcaaccggaag 544
|| ||||||||||| ||||| ||||| ||||| |||||||||||||| |||||||| |||
Sbjct: 357 gcctcagctgcagcggccactgctgagctgctgaagaagcaggaggaactcaaccgcaag 416
Query: 545 gcagaggagttggaccggagggagcgagagctgcagcatgctgccctggggggcacagct 604
||||||||||||||||| |||||||||| |||||||||| |||||||| || |||
Sbjct: 417 gcagaggagttggaccgccgggagcgagaactgcagcatgtcgccctgggtggtgcaggc 476
Query: 605 actcgacagaacaattggcctcctctaccttcgttttgcccagttcagcc-ctgcttctt 663
|||||||||||||| ||| |||| ||||| || |||||||| || |||| ||||| ||
Sbjct: 477 actcgacagaacaactggactcccctaccgtctttttgccctgtaaagcctatgcttttt 536
Query: 664 ccaggacatctctatggagatcccccaagaatttcagaagacagtatccacgatgtacta 723
||| ||||||||||||||||| ||||||||| |||||||||| || ||||| ||||||||
Sbjct: 537 ccaagacatctctatggagataccccaagaa-ttcagaagacggtgtccaccatgtacta 595
Query: 724 cctctggatgtgcagcaccctggctcttctcctgaatttcctcgcctgcctggctagctt 783
|||||||||||||||||| ||||||||||| ||||| ||| ||| ||||||||| || ||
Sbjct: 596 cctctggatgtgcagcactctggctcttctactgaacttcttcg-ctgcctggc-aggtt 653
Query: 784 ctgtgtggagaccaacactggctcaggcttcgggct 819
||||||||| ||| | |||||||||||| |||||
Sbjct: 654 ctgtgtggacaccgggagtggctcaggctttgggct 689
Score = 172 bits (87), Expect = 2e-41
Identities = 121/131 (92%), Gaps = 1/131 (0%)
Strand = Plus / Plus
Query: 258 ccggcgagcttgacaacccctttcaggacccagctgtgatccagcaccgacccagcccgc 317
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 124 ccggcgagcttgacaatccctttcaggacccagctgtgatccagcaccgacccagccagc 183
Query: 318 agtatgccacgcttgacgtctacaacccttttgagacccgggagccaccaccaagc-tat 376
||||||||||||| |||||||||||||| ||||||| ||| ||||| |||||| || ||
Sbjct: 184 agtatgccacgctggacgtctacaacccctttgagaaccgagagcccccaccaggcgtac 243
Query: 377 gagcctcctgc 387
|||||||||||
Sbjct: 244 gagcctcctgc 254
>gnl|UG|Mm#S8712296 uu11h02.y2 Soares_mammary_gland_NMLMG Mus
musculus cDNA clone IMAGE:3371667 5' similar to
SW:SCA3_MOUSE O35609 SECRETORY CARRIER-ASSOCIATED
MEMBRANE PROTEIN 3. ;. /clone=IMAGE:3371667
/clone_end=5' /gb=BE626815 /gi=9907235 /ti=114463046
/ug=Mm.374547 /len=657
Length = 657
Score = 125 bits (63), Expect = 5e-27
Identities = 114/131 (87%)
Strand = Plus / Minus
Query: 765 tcgcctgcctggctagcttctgtgtggagaccaacactggctcaggcttcgggctctcaa 824
||||||||||||| || ||||||||||| ||| || |||||||||||| ||||| || |
Sbjct: 652 tcgcctgcctggccaggttctgtgtggacaccggcagtggctcaggctttgggctgtcta 593
Query: 825 tcctctggatcctcctgttcactccctgctccttcgtctgctggtaccgtcccatgtata 884
| |||||| | ||||| ||||||||||||||||| |||||||||||||| || |||||||
Sbjct: 592 tgctctggctgctccttttcactccctgctcctttgtctgctggtaccgcccgatgtata 533
Query: 885 aggccttccgg 895
|||| ||||||
Sbjct: 532 aggctttccgg 522
Score = 81.8 bits (41), Expect = 7e-14
Identities = 62/69 (89%)
Strand = Plus / Minus
Query: 1046 gtgcttatgctgctggtcgccctgttcttcactggcatcgctgtgctgggaattgtgatg 1105
||||| |||||||| ||||||||| ||||||| |||||||| ||||||||||| ||||||
Sbjct: 430 gtgctcatgctgctcgtcgccctgctcttcaccggcatcgcagtgctgggaatcgtgatg 371
Query: 1106 ctaaagcgg 1114
|| ||||||
Sbjct: 370 ctgaagcgg 362
>gnl|UG|Hs#S4614666 Homo sapiens cDNA FLJ39475 fis, clone
PROST2013121, highly similar to SECRETORY
CARRIER-ASSOCIATED MEMBRANE PROTEIN 2 /gb=AK096794
/gi=21756364 /ug=Hs.458917 /len=3131
Length = 3131
Score = 44.1 bits (22), Expect = 0.015
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 842 ttcactccctgctccttcgtctgctggtaccgtcccatgtataaggcctt 891
||||||||||| ||||| | || |||||||| ||||| |||||||||||
Sbjct: 2493 ttcactccctgtgccttcctttgttggtaccgacccatctataaggcctt 2542
Score = 36.2 bits (18), Expect = 3.7
Identities = 45/54 (83%)
Strand = Plus / Plus
Query: 609 gacagaacaattggcctcctctaccttcgttttgcccagttcagccctgcttct 662
|||||||||| ||||| ||||| || |||| ||||| || ||||||||||||
Sbjct: 2260 gacagaacaactggccccctctgccctcgtggtgccctgtgaagccctgcttct 2313
>gnl|UG|Mm#S8762461 Mus musculus secretory carrier membrane protein
5 (Scamp5), mRNA /cds=p(141,848) /gb=NM_020270
/gi=31543673 /ug=Mm.102278 /len=3307
Length = 3307
Score = 44.1 bits (22), Expect = 0.015
Identities = 55/66 (83%)
Strand = Plus / Plus
Query: 827 ctctggatcctcctgttcactccctgctccttcgtctgctggtaccgtcccatgtataag 886
|||||| || |||| ||||| || ||||||| ||||||||||| || ||||| || |||
Sbjct: 366 ctctggctcatcctcttcacaccttgctcctacgtctgctggtttcggcccatttacaag 425
Query: 887 gccttc 892
||||||
Sbjct: 426 gccttc 431
>gnl|UG|Hs#S4615551 Homo sapiens cDNA FLJ38577 fis, clone HCHON2007650
/gb=AK095896 /gi=21755247 /ug=Hs.379754 /len=3200
Length = 3200
Score = 42.1 bits (21), Expect = 0.060
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1243 tgccttccgggccccgtgacccctg 1267
||||||| |||||||||||||||||
Sbjct: 305 tgccttctgggccccgtgacccctg 281
>gnl|UG|Ssc#S6014313 359231 MARC 1PIG Sus scrofa cDNA 5', mRNA
sequence /clone_end=5' /gb=BG895664 /gi=14305905
/ti=448059504 /ug=Ssc.27736 /len=702
Length = 702
Score = 42.1 bits (21), Expect = 0.060
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 582 atgctgccctggggggcacagctac 606
||||||||||||||| |||||||||
Sbjct: 231 atgctgccctgggggtcacagctac 207
>gnl|UG|Mm#S21695874 PREDICTED: Mus musculus LOC433343 (LOC433343),
mRNA /cds=p(1,1218) /gb=XM_488907 /gi=51705235
/ug=Mm.337397 /len=1218
Length = 1218
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 157 gccgccactgccgcggcagg 176
||||||||||||||||||||
Sbjct: 571 gccgccactgccgcggcagg 590
Database: UniGene(Bt+Hs+Ssc+Mm)
Posted date: Mar 18, 2005 8:01 PM
Number of letters in database: 222,131,506
Number of sequences in database: 151,043
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 1334
length of database: 222,131,506
effective HSP length: 19
effective length of query: 1315
effective length of database: 219,261,689
effective search space: 288329121035
effective search space used: 288329121035
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)