>20050322C-001236 (20050322C-001236) 20050322C-001236 ACATAGGCCG TCTTCAGCCG CAGCATCGAG TCGGCCGTCT TCAGCCGCAG CATCGAGTCG GCCTTGTTGG CCTACTAGAA AAAAAACTCC CTCCTCCAGC TTGTCCTCCG GTCGCGTTGC CACCACAGCG GCCGCTGCCG GGCGCGGTTA CGGCGGGTCG GTTGGTGTGT CTTTCAGCGT CGATTTCTGT GCAGTTGAAC GCCTGCCATG GCTGATTTAG ATCCGTTCGG CGCCCCCGCC GGCCCCTCGC TGGGGAACGG AGTGGCCGGC GAGGAGGACC CGGCCGCGGC CTTCTTGGCG CAGCAGGAGA GCGAGATTGC TGGCATCGAG AACGACGAGG CCTTCGCCAT CCTGGACGGA GGCGCTCCTG GGCCCCAGCC GCACGGCGAG CCGCCGGGGG GTCCGGATGC CGTTGATGGA GTGATGAATG GCGAATACTA CCAGGAGAGT AATGGGCCGA CAGACAGTTA TGCAGCTATT TCACAAGTGG ATCGATTGCA GTCAGAGCCT GAAAGTATCC GTAAATGGAG AGAAGAGCAA ACGGAACGCT TGGAAGCCCT TGATGCCAAT TCTCGGAAGC AGGAAGCAGA GTGGAAAGAA AAAGCAATAA AGGAGCTGGA AGAGTGGTAT GCAAGGCAGG ACGAGCAGTT ACAAAAGACG AAAGCAAACA ACAGGGCAGC AGAAGAAGCC TTTGTAAATG ACATTGAAGA GTCGTCCCCA GGCACGGAGT GGGAACGGGT GGCCCGGCTG TGTGACTTTA ACCCCAAGTC CAGCAAGCAG GCCAAAGATG TCTCCCGCAT GCGTTCTGTC CTCATCTCCC TCAAGCAGGC CCCCCTGGTG CACTGAAGAG CCACCATGTG GAAACACTAC ATCTGCAATA TCTTAATCCT ACTCAGTGAA GCTCTTCACA GTAATTGGAT TAATTATGTT GAGTTCTTTT GGACCAAACC TTTTTGTCTT TAGAGTTGAT CATTGTTTGT GATTGCATGT TTTCCTTCAA CTGTGTTCCT CCCTGGCATT CAAAGAGGAG CGGAAGCGCC CAGGGAGGGG AGGGGAGCCT CCCAGGGCAG CCTCACCTCT GCTTTTGTGC ATTTATTCCT GAAAAAAATT TCTGTTTAAA CTTTTAAAAA AAAAAAAAAA AAA
Query= 20050322C-001236 (20050322C-001236) 20050322C-001236
(1143 letters)
Database: UniGene(Bt+Hs+Ssc+Mm)
151,043 sequences; 222,131,506 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gnl|UG|Ssc#S6020888 75142 MARC 2PIG Sus scrofa cDNA 5', mRNA seq... 1005 0.0
Alignment gnl|UG|Bt#S11932608 Bos taurus mRNA for clathrin light chain a (... 670 0.0
Alignment gnl|UG|Hs#S21302516 full-length cDNA clone CS0DI073YB18 of Place... 626 e-178
Alignment gnl|UG|Mm#S10841960 Mus musculus 9.5 days embryo parthenogenote ... 186 1e-45
Alignment gnl|UG|Ssc#S18284330 BP440227 full-length enriched swine cDNA li... 151 8e-35
Alignment gnl|UG|Ssc#S22280351 CJ023081 full-length enriched swine cDNA li... 151 8e-35
Alignment gnl|UG|Ssc#S18281296 BP437193 full-length enriched swine cDNA li... 151 8e-35
Alignment gnl|UG|Ssc#S22283211 CJ025941 full-length enriched swine cDNA li... 151 8e-35
Alignment gnl|UG|Ssc#S18278243 BP434140 full-length enriched swine cDNA li... 147 1e-33
Alignment gnl|UG|Bt#S11932611 Bos taurus mRNA for clathrin light chain b (... 86 4e-15
>gnl|UG|Ssc#S6020888 75142 MARC 2PIG Sus scrofa cDNA 5', mRNA sequence
/clone_end=5' /gb=AW435862 /gi=6971240 /ti=470927543
/ug=Ssc.11113 /len=1118
Length = 1118
Score = 1005 bits (507), Expect = 0.0
Identities = 557/567 (98%), Gaps = 5/567 (0%)
Strand = Plus / Plus
Query: 535 gagcaaacggaacgcttggaagcccttgatgccaattctcggaagcaggaagcagagtgg 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 gagcaaacggaacgcttggaagcccttgatgccaattctcggaagcaggaagcagagtgg 126
Query: 595 aaagaaaaagcaataaaggagctggaagagtggtatgcaaggcaggacgagcagttacaa 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 aaagaaaaagcaataaaggagctggaagagtggtatgcaaggcaggacgagcagttacaa 186
Query: 655 aagacgaaagcaaacaacagggcagcagaagaagcctttgtaaatgacattgaagagtcg 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 aagacgaaagcaaacaacagggcagcagaagaagcctttgtaaatgacattgaagagtcg 246
Query: 715 tccccaggcacggagtgggaacgggtggcccggctgtgtgactttaaccccaagtccagc 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tccccaggcacggagtgggaacgggtggcccggctgtgtgactttaaccccaagtccagc 306
Query: 775 aagcaggccaaagatgtctcccgcatgcgttctgtcctcatctccctcaagcaggccccc 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 aagcaggccaaagatgtctcccgcatgcgttctgtcctcatctccctcaagcaggccccc 366
Query: 835 ctggtgcactgaagagccaccatgtggaaacactacatctgcaatatcttaatcctactc 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ctggtgcactgaagagccaccatgtggaaacactacatctgcaatatcttaatcctactc 426
Query: 895 agtgaagctcttcacagtaattggattaattatgttgagttcttttggaccaaacctttt 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 agtgaagctcttcacagtaattggattaattatgttgagttcttttggaccaaacctttt 486
Query: 955 tgtctttagagttgatcattgtttgtgattgcatgttttccttcaactgtgttcctccct 1014
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 487 tgtctttagagttgatcattgtttgtgattgcatg-tttccttcaactgtgtt-ctccct 544
Query: 1015 ggcattcaaagaggagcggaagcgcccagggaggggaggggagcctccc-agggcagcct 1073
|||||||| ||||||||||| ||||||||||| ||||||| ||||||| ||||||||||
Sbjct: 545 ggcattcagagaggagcggaggcgcccagggaagggagggaggcctcccaagggcagcct 604
Query: 1074 c-acctc-tgcttttgtgcatttattc 1098
| ||||| |||||||||||||||||||
Sbjct: 605 caacctcttgcttttgtgcatttattc 631
>gnl|UG|Bt#S11932608 Bos taurus mRNA for clathrin light chain a
(brain LCa) /cds=p(103,834) /gb=X04849 /gi=507
/ug=Bt.1617 /len=1110
Length = 1110
Score = 670 bits (338), Expect = 0.0
Identities = 451/488 (92%), Gaps = 3/488 (0%)
Strand = Plus / Plus
Query: 205 gccatggctgatttagatccgttcggcgcccccgccggc---ccctcgctggggaacgga 261
||||||||||| |||||||||||||||| |||||| ||| ||| | ||||||||||||
Sbjct: 100 gccatggctgagttagatccgttcggcgtccccgctggcggtcccgccctggggaacgga 159
Query: 262 gtggccggcgaggaggacccggccgcggccttcttggcgcagcaggagagcgagattgct 321
||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 160 gtggccggcgaagaggatcctgccgcggccttcttggcgcagcaggagagcgagattgcg 219
Query: 322 ggcatcgagaacgacgaggccttcgccatcctggacggaggcgctcctgggccccagccg 381
||||| |||||||||||||||||||||||||||||||| ||||| || || |||||||
Sbjct: 220 ggcatagagaacgacgaggccttcgccatcctggacggcggcgcccccggatcccagcct 279
Query: 382 cacggcgagccgccggggggtccggatgccgttgatggagtgatgaatggcgaatactac 441
|||||||||||||||||| ||| ||||| ||||||||||||| |||||| || ||||||
Sbjct: 280 cacggcgagccgccggggattccagatgctgttgatggagtgacgaatggagactactac 339
Query: 442 caggagagtaatgggccgacagacagttatgcagctatttcacaagtggatcgattgcag 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 caggagagtaatgggccgacagacagttatgcagctatttcacaagtggatcgattgcag 399
Query: 502 tcagagcctgaaagtatccgtaaatggagagaagagcaaacggaacgcttggaagccctt 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tcagagcctgaaagtatccgtaaatggagagaagagcaaacggaacgcttggaagccctt 459
Query: 562 gatgccaattctcggaagcaggaagcagagtggaaagaaaaagcaataaaggagctggaa 621
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 460 gatgccaattctcggaagcaggaagcggagtggaaagaaaaagcaataaaggagctggac 519
Query: 622 gagtggtatgcaaggcaggacgagcagttacaaaagacgaaagcaaacaacagggcagca 681
||||||||||| |||||||| |||||| |||| ||||| ||||| |||||||||| |||
Sbjct: 520 gagtggtatgcgaggcaggatgagcagctacagaagacaaaagccaacaacagggtggca 579
Query: 682 gaagaagc 689
|| |||||
Sbjct: 580 gatgaagc 587
Score = 618 bits (312), Expect = e-175
Identities = 348/356 (97%), Gaps = 3/356 (0%)
Strand = Plus / Plus
Query: 675 ggcagcagaagaagcctttgtaaatgacattgaagagtcgtccccaggcacggagtggga 734
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 663 ggcagcagaagaagcctttgtaaatgacattgaggagtcgtccccaggcactgagtggga 722
Query: 735 acgggtggcccggctgtgtgactttaaccccaagtccagcaagcaggccaaagatgtctc 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 acgggtggcccggctgtgtgactttaaccccaagtccagcaagcaggccaaagatgtctc 782
Query: 795 ccgcatgcgttctgtcctcatctccctcaagcaggcccccctggtgcactgaagagccac 854
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 783 ccgcatgcgttctgtcctcatctccctcaagcaggcccccctggtgcactgaagagccgc 842
Query: 855 catgtggaaacactacatctgcaatatcttaatcctactcagtgaagctcttcacagtaa 914
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 843 cctgtggaaacactacatctgcaatatcttaatcctactcagtgaagctcttcacggtaa 902
Query: 915 ttggattaattatgttgagttcttttggaccaaacctttttgtctttagagttgatcatt 974
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 903 ttggattaattatgttgagttcttttggaccaaacc-ttttgtctttagagttgatcatt 961
Query: 975 gtttgtgattgcatgttttccttcaactgtgttcctccctggcattcaaagaggag 1030
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 962 gtttgtgattgcatg-tttccttcaactgtgtt-ctccctggcattcaaagaggag 1015
>gnl|UG|Hs#S21302516 full-length cDNA clone CS0DI073YB18 of Placenta
Cot 25-normalized of Homo sapiens (human) /gb=CR599555
/gi=50480362 /ug=Hs.522114 /len=1890
Length = 1890
Score = 626 bits (316), Expect = e-178
Identities = 420/455 (92%), Gaps = 6/455 (1%)
Strand = Plus / Plus
Query: 228 cggcgcccccgccggcccctcgctggggaacggagtggccggcg------aggaggaccc 281
||||||||| | ||| ||| |||||||||||||||||||||||| | || |||||
Sbjct: 159 cggcgcccctggcggtcccgcgctggggaacggagtggccggcgccggcgaagaagaccc 218
Query: 282 ggccgcggccttcttggcgcagcaggagagcgagattgctggcatcgagaacgacgaggc 341
||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 219 ggctgcggccttcttggcgcagcaagagagcgagattgcgggcatcgagaacgacgaggc 278
Query: 342 cttcgccatcctggacggaggcgctcctgggccccagccgcacggcgagccgccgggggg 401
|||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct: 279 cttcgccatcctggacggcggcgcccccgggccccagccgcacggcgagccgccgggggg 338
Query: 402 tccggatgccgttgatggagtgatgaatggcgaatactaccaggagagtaatgggccgac 461
||||||||| ||||||||||| |||||||| |||||||||||||| |||||||| || ||
Sbjct: 339 tccggatgctgttgatggagtaatgaatggtgaatactaccaggaaagtaatggtccaac 398
Query: 462 agacagttatgcagctatttcacaagtggatcgattgcagtcagagcctgaaagtatccg 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 agacagttatgcagctatttcacaagtggatcgattgcagtcagagcctgaaagtatccg 458
Query: 522 taaatggagagaagagcaaacggaacgcttggaagcccttgatgccaattctcggaagca 581
||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 459 taaatggagagaagaacaaatggaacgcttggaagcccttgatgccaattctcggaagca 518
Query: 582 ggaagcagagtggaaagaaaaagcaataaaggagctggaagagtggtatgcaaggcagga 641
|||||||||||||||||||| |||||||||||||| ||||| ||||||||||| |||||
Sbjct: 519 agaagcagagtggaaagaaaaggcaataaaggagctagaagaatggtatgcaagacagga 578
Query: 642 cgagcagttacaaaagacgaaagcaaacaacaggg 676
||||||| |||| || || ||||||||||||||||
Sbjct: 579 cgagcagctacagaaaacaaaagcaaacaacaggg 613
Score = 46.1 bits (23), Expect = 0.003
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 205 gccatggctgatttagatccgttcggcgcccccgccggc 243
||||||||||| | ||||||||||||||||| ||||||
Sbjct: 124 gccatggctgagctggatccgttcggcgcccctgccggc 162
Score = 44.1 bits (22), Expect = 0.013
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 121 caccacagcggccgctgccgggcgcggttacggcgggtcggttggt 166
||||||||||| ||||||||||| ||| ||| ||||||||||||
Sbjct: 39 caccacagcggtggctgccgggcgtggtgtcggtgggtcggttggt 84
>gnl|UG|Mm#S10841960 Mus musculus 9.5 days embryo parthenogenote
cDNA, RIKEN full-length enriched library,
clone:B130050B18 product:clathrin, light polypeptide
(Lca), full insert sequence /cds=p(145,528) /gb=AK045237
/gi=26337178 /ug=Mm.298875 /len=2884
Length = 2884
Score = 186 bits (94), Expect = 1e-45
Identities = 130/142 (91%)
Strand = Plus / Plus
Query: 265 gccggcgaggaggacccggccgcggccttcttggcgcagcaggagagcgagattgctggc 324
|||||||| || ||||||||||||||||||||||||||||| ||||| |||||||| |||
Sbjct: 220 gccggcgaagaagacccggccgcggccttcttggcgcagcaagagagtgagattgcgggc 279
Query: 325 atcgagaacgacgaggccttcgccatcctggacggaggcgctcctgggccccagccgcac 384
||||||||||| ||||||||||||||||||||||| ||||| || ||||| ||||| |||
Sbjct: 280 atcgagaacgatgaggccttcgccatcctggacggcggcgcccccgggccgcagccacac 339
Query: 385 ggcgagccgccggggggtccgg 406
|||||||||||||| |||||||
Sbjct: 340 ggcgagccgccgggaggtccgg 361
>gnl|UG|Ssc#S18284330 BP440227 full-length enriched swine cDNA
library, adult lung Sus scrofa cDNA clone LNG010028H04
5', mRNA sequence /clone=LNG010028H04 /clone_end=5'
/gb=BP440227 /gi=40430294 /ug=Ssc.24353 /len=811
Length = 811
Score = 151 bits (76), Expect = 8e-35
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 1 acataggccgtcttcagccgcagcatcgagtcggccgtcttcagccgcagcatcgagtcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acataggccgtcttcagccgcagcatcgagtcggccgtcttcagccgcagcatcgagtcg 60
Query: 61 gccttgttggcctact 76
||||||||||||||||
Sbjct: 61 gccttgttggcctact 76
>gnl|UG|Ssc#S22280351 CJ023081 full-length enriched swine cDNA
library, adult trachea Sus scrofa cDNA clone
TCH01H090008 5', mRNA sequence /clone=TCH01H090008
/clone_end=5' /gb=CJ023081 /gi=54529139 /ug=Ssc.19075
/len=851
Length = 851
Score = 151 bits (76), Expect = 8e-35
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 1 acataggccgtcttcagccgcagcatcgagtcggccgtcttcagccgcagcatcgagtcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acataggccgtcttcagccgcagcatcgagtcggccgtcttcagccgcagcatcgagtcg 60
Query: 61 gccttgttggcctact 76
||||||||||||||||
Sbjct: 61 gccttgttggcctact 76
>gnl|UG|Ssc#S18281296 BP437193 full-length enriched swine cDNA
library, adult lung Sus scrofa cDNA clone LNG010023E04
5', mRNA sequence /clone=LNG010023E04 /clone_end=5'
/gb=BP437193 /gi=40427260 /ug=Ssc.18425 /len=869
Length = 869
Score = 151 bits (76), Expect = 8e-35
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 1 acataggccgtcttcagccgcagcatcgagtcggccgtcttcagccgcagcatcgagtcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acataggccgtcttcagccgcagcatcgagtcggccgtcttcagccgcagcatcgagtcg 60
Query: 61 gccttgttggcctact 76
||||||||||||||||
Sbjct: 61 gccttgttggcctact 76
>gnl|UG|Ssc#S22283211 CJ025941 full-length enriched swine cDNA
library, adult trachea Sus scrofa cDNA clone
TCH01D040047 5', mRNA sequence /clone=TCH01D040047
/clone_end=5' /gb=CJ025941 /gi=54535259 /ug=Ssc.5412
/len=908
Length = 908
Score = 151 bits (76), Expect = 8e-35
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 1 acataggccgtcttcagccgcagcatcgagtcggccgtcttcagccgcagcatcgagtcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acataggccgtcttcagccgcagcatcgagtcggccgtcttcagccgcagcatcgagtcg 60
Query: 61 gccttgttggcctact 76
||||||||||||||||
Sbjct: 61 gccttgttggcctact 76
>gnl|UG|Ssc#S18278243 BP434140 full-length enriched swine cDNA
library, adult lung Sus scrofa cDNA clone LNG010011B03
5', mRNA sequence /clone=LNG010011B03 /clone_end=5'
/gb=BP434140 /gi=40424207 /ug=Ssc.14073 /len=902
Length = 902
Score = 147 bits (74), Expect = 1e-33
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 1 acataggccgtcttcagccgcagcatcgagtcggccgtcttcagccgcagcatcgagtcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acataggccgtcttcagccgcagcatcgagtcggccgtcttcagccgcagcatcgagtcg 60
Query: 61 gccttgttggccta 74
||||||||||||||
Sbjct: 61 gccttgttggccta 74
>gnl|UG|Bt#S11932611 Bos taurus mRNA for clathrin light chain b
(lymphocyte LCb) /cds=p(143,775) /gb=X04853 /gi=513
/ug=Bt.10 /len=1033
Length = 1033
Score = 85.7 bits (43), Expect = 4e-15
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 270 cgaggaggacccggccgcggccttcttggcgcagcaggagagcgagattgctggcatcga 329
||||||||||||||| || ||||||||||| ||||||||||| |||||||| ||||| ||
Sbjct: 199 cgaggaggacccggcggctgccttcttggcccagcaggagagtgagattgcgggcataga 258
Query: 330 gaacgacgagg 340
||| |||||||
Sbjct: 259 gaatgacgagg 269
Score = 73.8 bits (37), Expect = 1e-11
Identities = 94/113 (83%)
Strand = Plus / Plus
Query: 716 ccccaggcacggagtgggaacgggtggcccggctgtgtgactttaaccccaagtccagca 775
|||| ||||| |||||||| |||||||| |||||||||||| ||||||||| |||||
Sbjct: 645 ccccgggcacagagtgggagaaggtggcccagctgtgtgacttcaaccccaagagcagca 704
Query: 776 agcaggccaaagatgtctcccgcatgcgttctgtcctcatctccctcaagcag 828
||||| |||||| || |||||| |||| || || ||||| ||||| ||||||
Sbjct: 705 agcagtgcaaagacgtgtcccgcctgcgctcggtgctcatgtccctgaagcag 757
Database: UniGene(Bt+Hs+Ssc+Mm)
Posted date: Mar 18, 2005 8:01 PM
Number of letters in database: 222,131,506
Number of sequences in database: 151,043
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 1143
length of database: 222,131,506
effective HSP length: 19
effective length of query: 1124
effective length of database: 219,261,689
effective search space: 246450138436
effective search space used: 246450138436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)