Search to UniGene2 database
Query= 20050322C-002086 (20050322C-002086) 20050322C-002086
(1042 letters)
Database: UniGene(Bt+Hs+Ssc+Mm)
151,043 sequences; 222,131,506 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gnl|UG|Hs#S14812780 Homo sapiens hypothetical protein LOC349136,... 603 e-171
Alignment gnl|UG|Mm#S17520555 Mus musculus cDNA clone IMAGE:6825904, parti... 587 e-166
Alignment gnl|UG|Bt#S12056431 502258 MARC 2BOV Bos taurus cDNA 5', mRNA se... 74 1e-11
Alignment gnl|UG|Mm#S10843722 Mus musculus 0 day neonate thymus cDNA, RIKE... 42 0.047
Alignment gnl|UG|Mm#S10836593 Mus musculus adult female vagina cDNA, RIKEN... 42 0.047
Alignment gnl|UG|Hs#S3219393 Homo sapiens phosphate regulating endopeptida... 40 0.19
Alignment gnl|UG|Mm#S17093704 Mus musculus RIKEN cDNA 1700001O22 gene (170... 40 0.19
Alignment gnl|UG|Bt#S11933307 Bos taurus endothelin converting enzyme-1a (... 40 0.19
Alignment gnl|UG|Hs#S1730954 Homo sapiens complement component 1, q subcom... 38 0.73
Alignment gnl|UG|Hs#S3602319 Homo sapiens histone deacetylase 10 (HDAC10),... 38 0.73
>gnl|UG|Hs#S14812780 Homo sapiens hypothetical protein LOC349136, mRNA
(cDNA clone IMAGE:6193025), partial cds /cds=p(1,1693)
/gb=BC047921 /gi=28839079 /ug=Hs.174373 /len=2169
Length = 2169
Score = 603 bits (304), Expect = e-171
Identities = 451/500 (90%)
Strand = Plus / Plus
Query: 543 aggacatgaaagctacgtgaccttctgccagctggaggacgaagctgccttcacgtgcag 602
|||||| |||||||| ||||||||||||||||||||||| || ||||||||||| |||||
Sbjct: 724 aggacacgaaagctatgtgaccttctgccagctggaggatgaggctgccttcacatgcag 783
Query: 603 cgctgactgcaccatccggaagtgggacgtgctgaccgggcagtgtctgcaggtgttccg 662
||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 784 cgccgactgcaccatcaggaggtgggacgtgctgaccgggcagtgtctgcaggtgtaccg 843
Query: 663 gggacacacatccattgtgaacaggatcctggtcaccaacaaccagctcttcagcagttc 722
|||||||| ||||| ||||||||||||||||| |||||||||||||||||||||| ||
Sbjct: 844 aggacacacgtccatcgtgaacaggatcctggttgccaacaaccagctcttcagcagctc 903
Query: 723 ctatgaccggacagctcgcgcctggagtgtagacaaagggcaggtgtcgcgggagttccg 782
|||||||||||||||||| | ||||||||| ||||| |||||| |||| |||||||||||
Sbjct: 904 ctatgaccggacagctcgggtctggagtgtggacaaggggcagatgtcccgggagttccg 963
Query: 783 gggccaccgcaactgtgtgctgactctagcctactctgccccctgggacctgcctggggc 842
||||||||||||||| |||||||| ||||||||||||||||| |||||||| || | |
Sbjct: 964 gggccaccgcaactgcgtgctgaccctagcctactctgccccgtgggacctccccagcac 1023
Query: 843 tccctgcgtggaggaggccgtggctggggggcttctggtgacgggaagcacagacggcac 902
|||||||| ||||||||||| ||| ||||||||||||||||| || |||||||| |||||
Sbjct: 1024 tccctgcgcggaggaggccgcggccggggggcttctggtgaccggcagcacagatggcac 1083
Query: 903 agccaaggtgtggcaagtggccagtggctgctgccaccagacgctgcggggccacacggg 962
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1084 agccaaggtgtggcaggtggccagcggctgctgccaccagacgctgcggggccacacggg 1143
Query: 963 cgccgtgctctgcctggtgttggacacacctgggcacacagccttcaccggcagcaccga 1022
|| ||||| ||||| ||| | ||||| || || ||||| |||||||| |||||||||||
Sbjct: 1144 tgcagtgctgtgcctagtgctagacacgcccggccacacggccttcacaggcagcaccga 1203
Query: 1023 cgccaccatccgcgcctggg 1042
|||||||||||| |||||||
Sbjct: 1204 cgccaccatccgtgcctggg 1223
Score = 309 bits (156), Expect = 1e-82
Identities = 245/274 (89%), Gaps = 3/274 (1%)
Strand = Plus / Plus
Query: 272 ccccgcgatggccgcgggccgcagcctcagggagctgctgccgcgtgggtgccggggcgc 331
|||||||||||||||||||||||| | | ||||| || |||| || |||||||||
Sbjct: 111 ccccgcgatggccgcgggccgcagtcgtacggagccgc---cgcgcggaccccggggcgc 167
Query: 332 ccctccctagcggggcgcagcctgcgcccggtccccgcccgaccagcggaatggggggcg 391
||||||||||||||||||||| | | ||||||||| ||||||| ||||||||||
Sbjct: 168 ccctccctagcggggcgcagctccttcttgttccccgccctgccagcgggatggggggcg 227
Query: 392 gagggtctgccctgagggtctgcgcggaccaccgcgggggcatcaactggctcagcctga 451
| ||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 228 gcgggtcggccctgagggtctgcgccgaccaccgcgggggcatcaactggctgagcctga 287
Query: 452 gccccgacgggcagcgcctgctgacgggcagcgaggacggcaccgcccggctctggagca 511
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 288 gccccgacgggcagcgcctgctgacgggcagcgaggacggcacggcccggctctggagca 347
Query: 512 ccgcggacggccagtgctgcgccctcctgcaagg 545
|||||||||||||||||||||| |||||||||||
Sbjct: 348 ccgcggacggccagtgctgcgcgctcctgcaagg 381
>gnl|UG|Mm#S17520555 Mus musculus cDNA clone IMAGE:6825904, partial
cds /gb=BC059069 /gi=37748165 /ug=Mm.269989 /len=4377
Length = 4377
Score = 587 bits (296), Expect = e-166
Identities = 515/588 (87%)
Strand = Plus / Plus
Query: 394 gggtctgccctgagggtctgcgcggaccaccgcgggggcatcaactggctcagcctgagc 453
||||| || ||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 350 gggtcggctctgagggtctgtgcggaccaccgcgggggcatcaactggctgagcctgagc 409
Query: 454 cccgacgggcagcgcctgctgacgggcagcgaggacggcaccgcccggctctggagcacc 513
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 410 cccgacgggcagcgcctgctgacgggcagcgaggacggcacagcccgcctctggagcacc 469
Query: 514 gcggacggccagtgctgcgccctcctgcaaggacatgaaagctacgtgaccttctgccag 573
| |||||||||||||||||| ||||| ||||||||||| ||||| ||||||||||| ||
Sbjct: 470 gtggacggccagtgctgcgcgctccttcaaggacatgagagctatgtgaccttctgtcac 529
Query: 574 ctggaggacgaagctgccttcacgtgcagcgctgactgcaccatccggaagtgggacgtg 633
|||||||| |||||||||||||| || || ||||||||||||||||||| |||||| |||
Sbjct: 530 ctggaggatgaagctgccttcacctgtagtgctgactgcaccatccggaggtgggatgtg 589
Query: 634 ctgaccgggcagtgtctgcaggtgttccggggacacacatccattgtgaacaggatcctg 693
||| ||||||||||||||||||| | | |||||||||||||||||||||||||||||
Sbjct: 590 aggacggggcagtgtctgcaggtgtacagaggacacacatccattgtgaacaggatccta 649
Query: 694 gtcaccaacaaccagctcttcagcagttcctatgaccggacagctcgcgcctggagtgta 753
|| |||| ||||||||||||||||||||||||| ||||||||||| | |||| |||
Sbjct: 650 gttgccaatgaccagctcttcagcagttcctatgatcggacagctcgtgtgtggactgtg 709
Query: 754 gacaaagggcaggtgtcgcgggagttccggggccaccgcaactgtgtgctgactctagcc 813
||||||||||| ||||| | ||||||||||||||||| |||||||| ||||| ||||||
Sbjct: 710 gacaaagggcaagtgtcccaagagttccggggccaccgtaactgtgtactgacactagcc 769
Query: 814 tactctgccccctgggacctgcctggggctccctgcgtggaggaggccgtggctgggggg 873
|||||||| ||| ||||||||| | ||||||| |||||| ||| ||| ||| |||
Sbjct: 770 tactctgctcccgaggacctgccccaagatccctgcatggaggcagccatgggtggtggg 829
Query: 874 cttctggtgacgggaagcacagacggcacagccaaggtgtggcaagtggccagtggctgc 933
|| || ||||| || ||| |||| | ||||||||| |||||||| || ||||||||||||
Sbjct: 830 ctcctagtgactggcagctcagatgacacagccaaagtgtggcaggtagccagtggctgc 889
Query: 934 tgccaccagacgctgcggggccacacgggcgccgtgctctgcctggtg 981
||||||||||| || ||||||||||| || || ||||| |||||||||
Sbjct: 890 tgccaccagactcttcggggccacacaggtgcagtgctgtgcctggtg 937
>gnl|UG|Bt#S12056431 502258 MARC 2BOV Bos taurus cDNA 5', mRNA
sequence /clone_end=5' /gb=BM088726 /gi=16999354
/ti=432654432 /ug=Bt.31473 /len=677
Length = 677
Score = 73.8 bits (37), Expect = 1e-11
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 496 gcccggctctggagcaccgcggacggccagtgctgcgccctcctgcaag 544
||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 74 gcccggctctggagcacggcggacggcacgtgctgcgccctcctgcaag 122
>gnl|UG|Mm#S10843722 Mus musculus 0 day neonate thymus cDNA, RIKEN
full-length enriched library, clone:A430060P14 product:G
protein beta subunit-like, full insert sequence
/cds=p(99,1079) /gb=AK040100 /gi=26333584 /ug=Mm.289516
/len=3361
Length = 3361
Score = 42.1 bits (21), Expect = 0.047
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 858 ggccgtggctggggggcttct 878
|||||||||||||||||||||
Sbjct: 2720 ggccgtggctggggggcttct 2700
>gnl|UG|Mm#S10836593 Mus musculus adult female vagina cDNA, RIKEN
full-length enriched library, clone:9930021D14
product:hypothetical Haem peroxidase superfamily
containing protein, full insert sequence /cds=p(339,863)
/gb=AK079437 /gi=26347990 /ug=Mm.258355 /len=998
Length = 998
Score = 42.1 bits (21), Expect = 0.047
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 858 ggccgtggctggggggcttct 878
|||||||||||||||||||||
Sbjct: 311 ggccgtggctggggggcttct 331
>gnl|UG|Hs#S3219393 Homo sapiens phosphate regulating endopeptidase
homolog, X-linked (hypophosphatemia, vitamin D resistant
rickets) (PHEX), transcript variant 1843529, mRNA
/cds=p(604,2853) /gb=NM_000444 /gi=40254423 /ug=Hs.495834
/len=3130
Length = 3130
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 695 tcaccaacaaccagctcttc 714
||||||||||||||||||||
Sbjct: 2636 tcaccaacaaccagctcttc 2655
>gnl|UG|Mm#S17093704 Mus musculus RIKEN cDNA 1700001O22 gene
(1700001O22Rik), mRNA /cds=p(151,1278) /gb=NM_198000
/gi=37574089 /ug=Mm.34166 /len=1423
Length = 1423
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 180 cgggtcccccgagtccccga 199
||||||||||||||||||||
Sbjct: 333 cgggtcccccgagtccccga 352
>gnl|UG|Bt#S11933307 Bos taurus endothelin converting enzyme-1a
(ECE-1a) mRNA, complete cds /cds=p(118,2394) /gb=U27342
/gi=897601 /ug=Bt.4378 /len=2889
Length = 2889
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 695 tcaccaacaaccagctcttc 714
||||||||||||||||||||
Sbjct: 2180 tcaccaacaaccagctcttc 2199
>gnl|UG|Hs#S1730954 Homo sapiens complement component 1, q
subcomponent-like 1 (C1QL1), mRNA /cds=p(229,1005)
/gb=NM_006688 /gi=34222385 /ug=Hs.134012 /len=1517
Length = 1517
Score = 38.2 bits (19), Expect = 0.73
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 260 ccggcgccggggccccgcg 278
|||||||||||||||||||
Sbjct: 356 ccggcgccggggccccgcg 338
>gnl|UG|Hs#S3602319 Homo sapiens histone deacetylase 10 (HDAC10),
mRNA /cds=p(354,2363) /gb=NM_032019 /gi=41393569
/ug=Hs.26593 /len=2702
Length = 2702
Score = 38.2 bits (19), Expect = 0.73
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 824 cctgggacctgcctggggc 842
|||||||||||||||||||
Sbjct: 261 cctgggacctgcctggggc 243
Database: UniGene(Bt+Hs+Ssc+Mm)
Posted date: Mar 18, 2005 8:01 PM
Number of letters in database: 222,131,506
Number of sequences in database: 151,043
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 1042
length of database: 222,131,506
effective HSP length: 19
effective length of query: 1023
effective length of database: 219,261,689
effective search space: 224304707847
effective search space used: 224304707847
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)