Search to UniGene2 database
Query= 20050322C-004297 (20050322C-004297) 20050322C-004297
(839 letters)
Database: UniGene(Bt+Hs+Ssc+Mm)
151,043 sequences; 222,131,506 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gnl|UG|Hs#S4284301 Homo sapiens mRNA for FLJ00227 protein. /cds=... 410 e-113
Alignment gnl|UG|Mm#S9108349 Mus musculus synaptotagmin-like 1, mRNA (cDNA... 315 2e-84
Alignment gnl|UG|Mm#S22421537 Mus musculus cDNA clone IMAGE:6400665, conta... 42 0.038
Alignment gnl|UG|Hs#S18960084 PREDICTED: Homo sapiens similar to interleuk... 40 0.15
Alignment gnl|UG|Hs#S14863436 Homo sapiens interleukin 9 receptor (IL9R), ... 40 0.15
Alignment gnl|UG|Hs#S2004529 EST381912 MAGE resequences, MAGK Homo sapiens... 40 0.15
Alignment gnl|UG|Hs#S1570566 Homo sapiens mRNA full length insert cDNA clo... 40 0.15
Alignment gnl|UG|Mm#S9939208 Mus musculus cDNA sequence BC039632, mRNA (cD... 40 0.15
Alignment gnl|UG|Mm#S10835431 Mus musculus adult male hippocampus cDNA, RI... 40 0.15
Alignment gnl|UG|Hs#S22402709 AGENCOURT_36396610 NIH_MGC_281 Homo sapiens ... 38 0.59
>gnl|UG|Hs#S4284301 Homo sapiens mRNA for FLJ00227 protein.
/cds=p(668,1258) /gb=AK074154 /gi=18676655 /ug=Hs.469175
/len=4235
Length = 4235
Score = 410 bits (207), Expect = e-113
Identities = 475/563 (84%), Gaps = 1/563 (0%)
Strand = Plus / Plus
Query: 97 cgtgtgcccagcgggggcaccgccccagctgatgccccagaggggccacccatctcaaga 156
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 145 cgtgtgcccagctggggcacagccccagctgatgccccagaggggccacccatcgcaaga 204
Query: 157 ggggctccgggtcctgcctggcctcctcatggcacatgagccagagcctgaggctgatgg 216
|||||| ||| ||||| ||||| |||||| |||| |||| |||||||| |||| ||
Sbjct: 205 ggggctttgggctctgccctccctccccatggcgcatgggccaaagcctgagactgaagg 264
Query: 217 gttactggacctcagcttcctgacggaggaggaacaggaagccattgctgaggtcctgaa 276
| ||||||||||||||||||| |||||||| ||||| |||||||||| ||||| |
Sbjct: 265 actgttggacctcagcttcctgacagaggaggagcaggaggccattgctggcgtcctcca 324
Query: 277 gcgagatgcccacctacggcagctggaggagggacgggtcagaaagctccgggcatcact 336
|||||||||| ||| || |||||||||||||| |||||||| ||||||||||| ||| |
Sbjct: 325 acgagatgcccgcctgcgccagctggaggaggggcgggtcagcaagctccgggcctcagt 384
Query: 337 ggaagaccctgggcagctgaagatcctaacaggggactggttccaggaagcacgctccca 396
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 385 ggcagaccctgggcagctgaagatcctgacaggggactggttccaggaagcacgctccca 444
Query: 397 gaggcaccaccacacccacctgggttctgacctagtccgagcctccatccgcagaaagaa 456
| |||||||| | ||||| | || |||||||| |||||||| || || ||||| |||||
Sbjct: 445 gcggcaccacaatgcccacttcggctctgaccttgtccgagcgtctatgcgcaggaagaa 504
Query: 457 gggctccaggggagaccaggctcggggcagcaatggggaggctgaggctgctgggaaaga 516
| || |||||||||||||||||| ||| | | |||||||||||||||||| ||||||
Sbjct: 505 gagcaccaggggagaccaggctccaggccacgacagggaggctgaggctgctgtgaaaga 564
Query: 517 gaccgaagaggcgctggagcccaggctccccatagacaaggccccccaagagagtctcag 576
|| ||||||| || |||||||||||| |||| || ||| ||| || ||||| |||||
Sbjct: 565 gaaggaagaggggccagagcccaggctcaccattgatgagg-ccctcaggagaggctcag 623
Query: 577 cgaggctgagggacctgatttcccctcaccatatgtccccactaaggcatcagataatga 636
||| ||||||||||||||||||| || || | ||||||| ||||| |||||| |||
Sbjct: 624 ggagactgagggacctgatttcccatcgccttctgtccccctaaaggcttcagatcctga 683
Query: 637 agaggagcccccggcccaggaag 659
|||| | ||| |||||||||||
Sbjct: 684 ggaggcgtcccaggcccaggaag 706
Score = 71.9 bits (36), Expect = 4e-11
Identities = 48/52 (92%)
Strand = Plus / Plus
Query: 788 ggagaatggggaggaggccccggggcctgacccctcactggaccgtatgctc 839
||||||||||||||||||||||||||| |||||||| || ||||| ||||||
Sbjct: 985 ggagaatggggaggaggccccggggcccgacccctctctcgaccgcatgctc 1036
>gnl|UG|Mm#S9108349 Mus musculus synaptotagmin-like 1, mRNA (cDNA
clone MGC:7008 IMAGE:3155535), complete cds
/cds=p(140,1066) /gb=BC005623 /gi=13542849 /ug=Mm.25660
/len=2495
Length = 2495
Score = 315 bits (159), Expect = 2e-84
Identities = 372/443 (83%)
Strand = Plus / Plus
Query: 74 tactggacccctacagggagccacgtgtgcccagcgggggcaccgccccagctgatgccc 133
|||||||||| |||||| ||| || | |||||||| ||||||| |||||||||||||||
Sbjct: 86 tactggacccttacaggaagctacatatgcccagctggggcacaaccccagctgatgccc 145
Query: 134 cagaggggccacccatctcaagaggggctccgggtcctgcctggcctcctcatggcacat 193
||||| |||||||||||||| ||| |||| ||| |||||| ||||| ||||||||||
Sbjct: 146 cagagaggccacccatctcaggagaggctttgggccctgccctccctccccatggcacat 205
Query: 194 gagccagagcctgaggctgatgggttactggacctcagcttcctgacggaggaggaacag 253
| |||| |||| | ||| ||||| |||||||||||||||||||| ||||||||||||
Sbjct: 206 ggaccaggatctgaagttgaggggttgctggacctcagcttcctgacagaggaggaacag 265
Query: 254 gaagccattgctgaggtcctgaagcgagatgcccacctacggcagctggaggagggacgg 313
|| ||||| |||| ||||| || |||||||||||||| || ||||||||||| || |||
Sbjct: 266 gaggccatctctgatgtcctcaaacgagatgcccacctgcgccagctggaggaagggcgg 325
Query: 314 gtcagaaagctccgggcatcactggaagaccctgggcagctgaagatcctaacaggggac 373
||||| ||||||||||| || ||||||||||| |||||||||||||||| |||||||||
Sbjct: 326 gtcagcaagctccgggcctccctggaagacccctggcagctgaagatcctgacaggggac 385
Query: 374 tggttccaggaagcacgctcccagaggcaccaccacacccacctgggttctgacctagtc 433
|||||||| ||||| || |||||||||||||| ||| |||| | ||||||||||| |||
Sbjct: 386 tggttccaagaagcgcgttcccagaggcaccatcacgcccattttggttctgaccttgtc 445
Query: 434 cgagcctccatccgcagaaagaagggctccaggggagaccaggctcggggcagcaatggg 493
|| || || ||||| || |||||| || | | ||| |||||||||| ||| || ||||
Sbjct: 446 cgggcttctatccgaaggaagaagagcccaaagggggaccaggctctggggagtgatggt 505
Query: 494 gaggctgaggctgctgggaaaga 516
|| || |||||||||||| ||||
Sbjct: 506 gaagcagaggctgctggggaaga 528
Score = 40.1 bits (20), Expect = 0.15
Identities = 44/52 (84%)
Strand = Plus / Plus
Query: 788 ggagaatggggaggaggccccggggcctgacccctcactggaccgtatgctc 839
||||||||| || ||||||||||||| | |||||| || ||||| ||||||
Sbjct: 808 ggagaatggagaagaggccccggggctcggcccctctcttgaccgcatgctc 859
>gnl|UG|Mm#S22421537 Mus musculus cDNA clone IMAGE:6400665,
containing frame-shift errors /gb=BC086620 /gi=55777289
/ug=Mm.272312 /len=4668
Length = 4668
Score = 42.1 bits (21), Expect = 0.038
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 288 acctacggcagctggaggagg 308
|||||||||||||||||||||
Sbjct: 641 acctacggcagctggaggagg 661
>gnl|UG|Hs#S18960084 PREDICTED: Homo sapiens similar to interleukin
9 receptor (LOC400481), mRNA /cds=p(638,1660)
/gb=XM_375284 /gi=51473146 /ug=Hs.549348 /len=2068
Length = 2068
Score = 40.1 bits (20), Expect = 0.15
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 537 ccaggctccccatagacaaggccc 560
|||||||||||| |||||||||||
Sbjct: 853 ccaggctccccagagacaaggccc 876
>gnl|UG|Hs#S14863436 Homo sapiens interleukin 9 receptor (IL9R),
transcript variant 2, mRNA /cds=p(194,1192) /gb=NM_176786
/gi=29171683 /ug=Hs.406228 /len=2175
Length = 2175
Score = 40.1 bits (20), Expect = 0.15
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 537 ccaggctccccatagacaaggccc 560
|||||||||||| |||||||||||
Sbjct: 1030 ccaggctccccagagacaaggccc 1053
>gnl|UG|Hs#S2004529 EST381912 MAGE resequences, MAGK Homo sapiens
cDNA, mRNA sequence /gb=AW969834 /gi=8159678
/ug=Hs.303303 /len=474
Length = 474
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 365 acaggggactggttccagga 384
||||||||||||||||||||
Sbjct: 209 acaggggactggttccagga 190
>gnl|UG|Hs#S1570566 Homo sapiens mRNA full length insert cDNA clone
EUROIMAGE 31619 /gb=AL109722 /gi=5689814 /ug=Hs.170079
/len=1716
Length = 1716
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 365 acaggggactggttccagga 384
||||||||||||||||||||
Sbjct: 929 acaggggactggttccagga 948
>gnl|UG|Mm#S9939208 Mus musculus cDNA sequence BC039632, mRNA (cDNA
clone IMAGE:5124409), partial cds /cds=p(1,1283)
/gb=BC039632 /gi=24586696 /ug=Mm.360325 /len=1587
Length = 1587
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 194 gagccagagcctgaggctga 213
||||||||||||||||||||
Sbjct: 1218 gagccagagcctgaggctga 1237
>gnl|UG|Mm#S10835431 Mus musculus adult male hippocampus cDNA, RIKEN
full-length enriched library, clone:C630025L14
product:hypothetical protein, full insert sequence
/cds=p(1800,2132) /gb=AK083196 /gi=26350330 /ug=Mm.358838
/len=2398
Length = 2398
Score = 40.1 bits (20), Expect = 0.15
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 802 aggccccggggcctgacccctcac 825
||||||||||||||| ||||||||
Sbjct: 1762 aggccccggggcctgtcccctcac 1785
>gnl|UG|Hs#S22402709 AGENCOURT_36396610 NIH_MGC_281 Homo sapiens
cDNA clone IMAGE:7508197 5', mRNA sequence
/clone=IMAGE:7508197 /clone_end=5' /gb=CV814718
/gi=55757789 /ug=Hs.548129 /len=891
Length = 891
Score = 38.2 bits (19), Expect = 0.59
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 392 tcccagaggcaccaccaca 410
|||||||||||||||||||
Sbjct: 731 tcccagaggcaccaccaca 749
Database: UniGene(Bt+Hs+Ssc+Mm)
Posted date: Mar 18, 2005 8:01 PM
Number of letters in database: 222,131,506
Number of sequences in database: 151,043
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 839
length of database: 222,131,506
effective HSP length: 19
effective length of query: 820
effective length of database: 219,261,689
effective search space: 179794584980
effective search space used: 179794584980
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)