>20050322C-004826 (20050322C-004826) 20050322C-004826 CTCGACCCCG ACGCCGCTGC CGCCGCAGGC CCCTCCACGC CCACACCCCC TACCCACTGC CCAGCCATGG AGGCCATCAA GAAGAAGATG CAGATGCTGA AGCTGGACAA GGAGAACGCC ATCGACCGGG CCGAGCAGGC GGAGTCGGAT AAGAAAGCTG CTGAGGAGAA GTGCAAGCAG GTGGAGGAGG AGCTGACGCA CCTCCAGAAG AAGCTGAAGG GGACAGAGGA TGAGCTGGAC AAATACTCCG AGAACCTGAA GGACGCGCAG GAAAAGCTGG AGCTGAGCGA GAAGAAAGCC TCCGACGCCG AAGGGGATGT AGCAGCTCTC AATCGGCGCA TCCAACTCGT TGAGGAGGAG TTGGACAGGG CTCAGGAACG ACTGGCCACA GCCCTGCAGA AGCTTGAGGA GGCAGAAAAG GCTGCAGATG AGAGCGAGAG AGGAATGAAG GTGATAGAAA ACCGGGCCAT GAAAGATGAG GAGAAGATGG AGATTCAGGA GATGCAGCTC AAAGAGGCCA AGCACATTGC CGAGGAGGCC GACCGCAAAT ACGAGGAGGT AGCTCGTAAG TTGGTCATCC TGGAGGGCGA GCTGGAGAGG GCAGAGGAGC GTGCCGAGGT GTCTGAACTA AAATGTGGTG ACCTGGAAGA AGAACTCAAG AATGTCACCA ACAACCTGAA GTCGCTAGAG GCTGCATCTG AAAAGTATTC TGAAAAGGAG GATAAATATG AAGAAGAGAT TAAACTTCTG TCTGACAAAC TGAAAGAGGC TGAGACCCGT GCTGAATTTG CAGAGAGAAC AGTTGCAAAA CTGGAAAAGA CCATCGATGA CCTGGAAGAA AAACTTGTCC AGGCCAAAGA AAAGAACGTG GGCTTTACTC AAACACTGGA TCCGACACTA AACGACCTAA ACTGTATATA ACCAAACCAA AAAAATCTCG TTCCCTCCAA AACTTCCCAA GCTACGTTGT TTTTCCCCTT CTCTTGTAAG AAAGTTTTCT TTTGTTTTTT GCCCCCTTTG CTTTTGCCTG AAAAAGGGCA AGGCAAAATT TATAAATACC CGTGAACCCA ATATTTTTTT TGTTATCAAA AAAAAACTTT TTTAAACCCC CCAAGTTTAA AAATTCTTTT TTTCCTTTTC CCTTTTTTTT TTTTCCAAGG GTGGGCCCCC CCCCCCCCTT TTTTTTTTCT CCCACCCCTT CTTTTTTTTT TTTTTT
Query= 20050322C-004826 (20050322C-004826) 20050322C-004826
(1216 letters)
Database: UniGene(Bt+Hs+Ssc+Mm)
151,043 sequences; 222,131,506 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gnl|UG|Hs#S7112518 PREDICTED: Homo sapiens similar to tropomyosi... 801 0.0
Alignment gnl|UG|Mm#S11102429 Mus musculus tropomyosin 4, mRNA (cDNA clone... 611 e-173
Alignment gnl|UG|Hs#S21311480 full-length cDNA clone CS0DK002YI10 of HeLa ... 357 7e-97
Alignment gnl|UG|Ssc#S18260562 BP157053 full-length enriched swine cDNA li... 295 2e-78
Alignment gnl|UG|Mm#S9085693 Mus musculus 18-day embryo whole body cDNA, R... 283 9e-75
Alignment gnl|UG|Mm#S7114452 Mouse skeletal muscle beta tropomyosin mRNA, ... 258 5e-67
Alignment gnl|UG|Ssc#S6089598 Z98799 pT7T318U Sus scrofa domestica cDNA cl... 244 7e-63
Alignment gnl|UG|Bt#S11975653 6664 MARC BSM Bos taurus cDNA 5', mRNA seque... 208 4e-52
Alignment gnl|UG|Hs#S3989649 Homo sapiens cDNA FLJ32003 fis, clone NT2RP70... 163 2e-38
Alignment gnl|UG|Bt#S22877747 Bos taurus TPM3 mRNA for tropomyosin 3, comp... 151 8e-35
>gnl|UG|Hs#S7112518 PREDICTED: Homo sapiens similar to tropomyosin 4
(LOC285321), mRNA /cds=p(283,759) /gb=XM_208313
/gi=51463928 /ug=Hs.449194 /len=1364
Length = 1364
Score = 801 bits (404), Expect = 0.0
Identities = 563/616 (91%)
Strand = Plus / Plus
Query: 311 aaggggatgtagcagctctcaatcggcgcatccaactcgttgaggaggagttggacaggg 370
|||| ||||| || || ||||| || |||||||| |||||||||||| ||||||||||||
Sbjct: 149 aaggtgatgtggccgccctcaaccgacgcatccagctcgttgaggagaagttggacaggg 208
Query: 371 ctcaggaacgactggccacagccctgcagaagcttgaggaggcagaaaaggctgcagatg 430
|||||||| |||||||||| |||| ||||||||| |||||||||||||| ||||||||||
Sbjct: 209 ctcaggaaagactggccacggccccgcagaagctggaggaggcagaaaaagctgcagatg 268
Query: 431 agagcgagagaggaatgaaggtgatagaaaaccgggccatgaaagatgaggagaagatgg 490
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 269 agagtgagagaggaatgaaggtgatagaaaaccgggccatgaaggatgaggagaagatgg 328
Query: 491 agattcaggagatgcagctcaaagaggccaagcacattgccgaggaggccgaccgcaaat 550
| ||||||||| |||||||||||||||||||||||||||| || ||||| ||||||||||
Sbjct: 329 aaattcaggagctgcagctcaaagaggccaagcacattgcggaagaggctgaccgcaaat 388
Query: 551 acgaggaggtagctcgtaagttggtcatcctggagggcgagctggagagggcagaggagc 610
|| |||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||
Sbjct: 389 actgggaggtagctcgtaagctggtcttcctggagggtgagctggagagggcagaggagc 448
Query: 611 gtgccgaggtgtctgaactaaaatgtggtgacctggaagaagaactcaagaatgtcacca 670
||| ||||||||||||||||||||||||||||| |||||||||||||||||||| || |
Sbjct: 449 gtgtggaggtgtctgaactaaaatgtggtgaccttgaagaagaactcaagaatgttacta 508
Query: 671 acaacctgaagtcgctagaggctgcatctgaaaagtattctgaaaaggaggataaatatg 730
|||| ||||| || || |||||||| |||||||||||||||||||||||||| |||| ||
Sbjct: 509 acaatctgaaatctctggaggctgcgtctgaaaagtattctgaaaaggaggacaaatgtg 568
Query: 731 aagaagagattaaacttctgtctgacaaactgaaagaggctgagacccgtgctgaatttg 790
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 569 aagaagaaattaaacttctgtgtgacaaactgaaagaggctgagacccgtgctgaatttg 628
Query: 791 cagagagaacagttgcaaaactggaaaagaccatcgatgacctggaagaaaaacttgtcc 850
|||||||||| |||||||||||||||||||| || |||||||||||||| ||||||| ||
Sbjct: 629 cagagagaacggttgcaaaactggaaaagacaattgatgacctggaagagaaacttgccc 688
Query: 851 aggccaaagaaaagaacgtgggctttactcaaacactggatccgacactaaacgacctaa 910
||||||||||| ||||||||||||| ||| |||||||||| |||||||||||| || |
Sbjct: 689 aggccaaagaagagaacgtgggcttacatcagacactggatcagacactaaacgagctta 748
Query: 911 actgtatataaccaaa 926
||||||||||| ||||
Sbjct: 749 actgtatataagcaaa 764
>gnl|UG|Mm#S11102429 Mus musculus tropomyosin 4, mRNA (cDNA clone
MGC:38384 IMAGE:5345587), complete cds /cds=p(38,784)
/gb=BC023701 /gi=23958443 /ug=Mm.295124 /len=2118
Length = 2118
Score = 611 bits (308), Expect = e-173
Identities = 536/612 (87%)
Strand = Plus / Plus
Query: 310 gaaggggatgtagcagctctcaatcggcgcatccaactcgttgaggaggagttggacagg 369
||||| |||| ||| |||||||| || ||||||||||| | |||||||| ||||| ||
Sbjct: 173 gaaggagatgcagccgctctcaaccgccgcatccaactgctggaggaggaactggaccgg 232
Query: 370 gctcaggaacgactggccacagccctgcagaagcttgaggaggcagaaaaggctgcagat 429
|||||||| | |||||||||||||||||||| || || |||||||| |||||||| |||
Sbjct: 233 gctcaggagcagctggccacagccctgcagaatctggaagaggcagagaaggctgctgat 292
Query: 430 gagagcgagagaggaatgaaggtgatagaaaaccgggccatgaaagatgaggagaagatg 489
||||| |||||||| |||||||| ||||| ||||| ||||||||||||||||| ||||||
Sbjct: 293 gagagtgagagaggcatgaaggtaatagagaaccgagccatgaaagatgaggaaaagatg 352
Query: 490 gagattcaggagatgcagctcaaagaggccaagcacattgccgaggaggccgaccgcaaa 549
||||| | |||||||||||||||||| ||||||||||| | || || |||||||||||
Sbjct: 353 gagatcctggagatgcagctcaaagaagccaagcacatcactgatgaagccgaccgcaag 412
Query: 550 tacgaggaggtagctcgtaagttggtcatcctggagggcgagctggagagggcagaggag 609
|| |||||||| |||||||||||||||||||||||||| |||||| | || |||||||||
Sbjct: 413 tatgaggaggttgctcgtaagttggtcatcctggagggtgagctgaaaagagcagaggag 472
Query: 610 cgtgccgaggtgtctgaactaaaatgtggtgacctggaagaagaactcaagaatgtcacc 669
|| || ||||| ||||||||||| |||||||||||||||||||| ||||||||||| ||
Sbjct: 473 cgggcggaggtatctgaactaaagtgtggtgacctggaagaagagctcaagaatgtaact 532
Query: 670 aacaacctgaagtcgctagaggctgcatctgaaaagtattctgaaaaggaggataaatat 729
||||| ||||| || || |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 533 aacaatctgaaatcactggaggctgcttctgaaaagtattctgaaaaggaggataaatat 592
Query: 730 gaagaagagattaaacttctgtctgacaaactgaaagaggctgagacccgtgctgaattt 789
|||||||| || || |||||||||||||| ||||| |||||||||||||| ||||| |||
Sbjct: 593 gaagaagaaatcaagcttctgtctgacaagctgaaggaggctgagacccgagctgagttt 652
Query: 790 gcagagagaacagttgcaaaactggaaaagaccatcgatgacctggaagaaaaacttgtc 849
||||| || |||||| | |||||||| ||||| ||||||||||||||||||||||||| |
Sbjct: 653 gcagaaaggacagtttctaaactggagaagacaatcgatgacctggaagaaaaacttgcc 712
Query: 850 caggccaaagaaaagaacgtgggctttactcaaacactggatccgacactaaacgaccta 909
|||||||||||| |||| |||||||| ||| |||||||| | |||||||||||| ||
Sbjct: 713 caggccaaagaagagaatgtgggcttacatcagacactggaccagacactaaacgaactt 772
Query: 910 aactgtatataa 921
||||||||||||
Sbjct: 773 aactgtatataa 784
>gnl|UG|Hs#S21311480 full-length cDNA clone CS0DK002YI10 of HeLa
cells Cot 25-normalized of Homo sapiens (human)
/gb=CR590682 /gi=50471489 /ug=Hs.300772 /len=1735
Length = 1735
Score = 357 bits (180), Expect = 7e-97
Identities = 447/536 (83%)
Strand = Plus / Plus
Query: 62 cagccatggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaacgcca 121
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90 cagccatggacgccatcaagaagaagatgcagatgctgaagctggacaaggagaacgcca 149
Query: 122 tcgaccgggccgagcaggcggagtcggataagaaagctgctgaggagaagtgcaagcagg 181
||||||| ||||||||||| || | || ||||| |||||||| |||||||||
Sbjct: 150 tcgaccgcgccgagcaggccgaagccgacaagaagcaagctgaggaccgctgcaagcagc 209
Query: 182 tggaggaggagctgacgcacctccagaagaagctgaaggggacagaggatgagctggaca 241
|||||||||||| | | |||||||||||||||||||||||||||||||||| |||| |
Sbjct: 210 tggaggaggagcagcaggccctccagaagaagctgaaggggacagaggatgaggtggaaa 269
Query: 242 aatactccgagaacctgaaggacgcgcaggaaaagctggagctgagcgagaagaaagcct 301
| || || || | ||||||| || ||||| || ||||||| | ||||||||| |||
Sbjct: 270 agtattctgaatccgtgaaggaggcccaggagaaactggagcaggccgagaagaaggcca 329
Query: 302 ccgacgccgaaggggatgtagcagctctcaatcggcgcatccaactcgttgaggaggagt 361
| || || || | ||||| || | || || || ||||| || || ||||||||||||
Sbjct: 330 ctgatgctgaggcagatgtggcctccctgaaccgccgcattcagctggttgaggaggagc 389
Query: 362 tggacagggctcaggaacgactggccacagccctgcagaagcttgaggaggcagaaaagg 421
||||| |||| ||||| || ||||| ||||||||||||||||| |||||||| || ||||
Sbjct: 390 tggaccgggcccaggagcgcctggctacagccctgcagaagctggaggaggccgagaagg 449
Query: 422 ctgcagatgagagcgagagaggaatgaaggtgatagaaaaccgggccatgaaagatgagg 481
| || |||||||||||||||||||||||||| || ||||||||||||||||| |||||||
Sbjct: 450 cggctgatgagagcgagagaggaatgaaggtcatcgaaaaccgggccatgaaggatgagg 509
Query: 482 agaagatggagattcaggagatgcagctcaaagaggccaagcacattgccgaggaggccg 541
|||||||||| | |||||||||||||| || |||||||||||||| || ||||| | |
Sbjct: 510 agaagatggaactgcaggagatgcagctgaaggaggccaagcacatcgctgaggattcag 569
Query: 542 accgcaaatacgaggaggtagctcgtaagttggtcatcctggagggcgagctggag 597
|||||||||| || ||||| || | ||| |||| |||||||| || |||||||||
Sbjct: 570 accgcaaatatgaagaggtggccaggaagctggtgatcctggaaggagagctggag 625
Score = 54.0 bits (27), Expect = 1e-05
Identities = 96/119 (80%)
Strand = Plus / Plus
Query: 721 gataaatatgaagaagagattaaacttctgtctgacaaactgaaagaggctgagacccgt 780
|||||||||||||| ||||| ||||| || || || ||||| ||||||||||||||
Sbjct: 749 gataaatatgaagaggagatcaaactgttggaggagaagctgaaggaggctgagacccga 808
Query: 781 gctgaatttgcagagagaacagttgcaaaactggaaaagaccatcgatgacctggaaga 839
|| || ||||| ||||| | || ||||| |||| || |||||||||||||| |||||
Sbjct: 809 gcagagtttgccgagaggtctgtggcaaagttggagaaaaccatcgatgacctagaaga 867
>gnl|UG|Ssc#S18260562 BP157053 full-length enriched swine cDNA
library, adult spleen Sus scrofa cDNA clone SPL010009B03
5', mRNA sequence /clone=SPL010009B03 /clone_end=5'
/gb=BP157053 /gi=40406526 /ug=Ssc.20571 /len=893
Length = 893
Score = 295 bits (149), Expect = 2e-78
Identities = 437/533 (81%)
Strand = Plus / Plus
Query: 65 ccatggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaacgccatcg 124
||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 107 ccatggatgccatcaagaagaagatgcagatgctaaagctggacaaggagaatgccatcg 166
Query: 125 accgggccgagcaggcggagtcggataagaaagctgctgaggagaagtgcaagcaggtgg 184
|||| || |||||||||||| | || ||||| ||||| || ||||||||| |||
Sbjct: 167 accgtgctgagcaggcggaggctgacaagaagcaggctgaagaccgctgcaagcagctgg 226
Query: 185 aggaggagctgacgcacctccagaagaagctgaaggggacagaggatgagctggacaaat 244
||||||||| | | |||||||||||||||||| ||||| ||||||||| |||| || |
Sbjct: 227 aggaggagcagcaggccctccagaagaagctgaaagggacggaggatgaggtggaaaagt 286
Query: 245 actccgagaacctgaaggacgcgcaggaaaagctggagctgagcgagaagaaagcctccg 304
| ||||| ||||||| || ||||| || ||||||| | || ||||| ||| |||
Sbjct: 287 attccgaatcagtgaaggatgcccaggagaaactggagcaggctgaaaagaaggccaccg 346
Query: 305 acgccgaaggggatgtagcagctctcaatcggcgcatccaactcgttgaggaggagttgg 364
||||||| | ||||| || | || || || ||||| || || || ||||||||| |||
Sbjct: 347 acgccgaggcagatgtggcctccctgaaccgccgcattcagctagtagaggaggagctgg 406
Query: 365 acagggctcaggaacgactggccacagccctgcagaagcttgaggaggcagaaaaggctg 424
|| |||| ||||| || ||||||||||||||||| ||||| |||||||| | ||||| |
Sbjct: 407 accgggcgcaggagcgtctggccacagccctgcaaaagctggaggaggccgggaaggcag 466
Query: 425 cagatgagagcgagagaggaatgaaggtgatagaaaaccgggccatgaaagatgaggaga 484
| |||||||| || |||||||||||||| || |||||||| |||||||| |||||||| |
Sbjct: 467 ctgatgagagtgaaagaggaatgaaggtcattgaaaaccgagccatgaaggatgaggaaa 526
Query: 485 agatggagattcaggagatgcagctcaaagaggccaagcacattgccgaggaggccgacc 544
|||||||| | |||||||||||||| || |||||||||||||| || ||||| | ||||
Sbjct: 527 agatggagctgcaggagatgcagctgaaggaggccaagcacatcgctgaggattcagacc 586
Query: 545 gcaaatacgaggaggtagctcgtaagttggtcatcctggagggcgagctggag 597
||||||| |||||||| || | ||| |||| |||||||| || |||||||||
Sbjct: 587 gcaaatatgaggaggtggccaggaagctggtgatcctggaaggagagctggag 639
Score = 60.0 bits (30), Expect = 2e-07
Identities = 99/122 (81%)
Strand = Plus / Plus
Query: 718 gaggataaatatgaagaagagattaaacttctgtctgacaaactgaaagaggctgagacc 777
||||||||||||||||| ||||| ||||| ||| || || || || ||||||||||||
Sbjct: 760 gaggataaatatgaagaggagatcaaactgctggaagagaagctaaaggaggctgagacc 819
Query: 778 cgtgctgaatttgcagagagaacagttgcaaaactggaaaagaccatcgatgacctggaa 837
|| || || ||||| || || | || ||||| |||| || ||||||||||||||||||
Sbjct: 820 cgagcagagtttgccgaaaggtcggtggcaaagttggagaaaaccatcgatgacctggaa 879
Query: 838 ga 839
||
Sbjct: 880 ga 881
>gnl|UG|Mm#S9085693 Mus musculus 18-day embryo whole body cDNA,
RIKEN full-length enriched library, clone:1100001I18
product:tropomyosin 2, beta, full insert sequence
/cds=p(83,937) /gb=AK003175 /gi=12833676 /ug=Mm.121878
/len=1703
Length = 1703
Score = 283 bits (143), Expect = 9e-75
Identities = 590/739 (79%)
Strand = Plus / Plus
Query: 65 ccatggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaacgccatcg 124
||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||| | |
Sbjct: 81 ccatggacgccatcaagaagaagatgcagatgctgaagctcgacaaagagaacgccttgg 140
Query: 125 accgggccgagcaggcggagtcggataagaaagctgctgaggagaagtgcaagcaggtgg 184
| || || ||||| |||||| | |||||||| || || || || | |||||||| |||
Sbjct: 141 atcgagctgagcaagcggaggctgataagaaggcggcggaagaccggagcaagcagctgg 200
Query: 185 aggaggagctgacgcacctccagaagaagctgaaggggacagaggatgagctggacaaat 244
| || |||||| | || || ||||| || ||||| || || ||||| ||||||||||
Sbjct: 201 aagatgagctggtgtcactgcaaaagaaactcaagggcactgaagatgaactggacaaat 260
Query: 245 actccgagaacctgaaggacgcgcaggaaaagctggagctgagcgagaagaaagcctccg 304
|||||||| || || || || ||||| || ||||||||| ||||| || ||| | |
Sbjct: 261 actccgaggctctcaaagatgcccaggagaaactggagctggcggagaaaaaggccacag 320
Query: 305 acgccgaaggggatgtagcagctctcaatcggcgcatccaactcgttgaggaggagttgg 364
| || |||| || ||||| |||| || | |||||||| || ||||||||||||||||
Sbjct: 321 atgctgaagctgacgtagcttctctgaacagacgcatccagctggttgaggaggagttgg 380
Query: 365 acagggctcaggaacgactggccacagccctgcagaagcttgaggaggcagaaaaggctg 424
| | |||||||| || ||||||||||| ||||||||||| |||||||| || |||||||
Sbjct: 381 atcgtgctcaggagcgtctggccacagctctgcagaagctggaggaggccgagaaggctg 440
Query: 425 cagatgagagcgagagaggaatgaaggtgatagaaaaccgggccatgaaagatgaggaga 484
|||||||||| |||||||| ||||| || || |||| ||| ||| |||||||| || |
Sbjct: 441 cagatgagagtgagagaggcatgaaagtcattgaaagccgagcccaaaaagatgaagaaa 500
Query: 485 agatggagattcaggagatgcagctcaaagaggccaagcacattgccgaggaggccgacc 544
||||||||||||||||||| ||||| |||||||||||||||||||| || || || ||||
Sbjct: 501 agatggagattcaggagatccagctgaaagaggccaagcacattgctgaagatgctgacc 560
Query: 545 gcaaatacgaggaggtagctcgtaagttggtcatcctggagggcgagctggagagggcag 604
| || || || ||||| || |||||| |||||||| | ||| |||| ||||| | ||||
Sbjct: 561 ggaagtatgaagaggtggcccgtaagctggtcatcatcgagagcgacctggaacgtgcag 620
Query: 605 aggagcgtgccgaggtgtctgaactaaaatgtggtgacctggaagaagaactcaagaatg 664
||||||| || ||| | || ||| ||||||| || || ||||||||| | || | |
Sbjct: 621 aggagcgggctgagctctcagaaggcaaatgtgccgagcttgaagaagaattgaaaacgg 680
Query: 665 tcaccaacaacctgaagtcgctagaggctgcatctgaaaagtattctgaaaaggaggata 724
| || |||||| ||||||| || |||||| |||| ||||| ||| | ||||| || |
Sbjct: 681 tgacgaacaacttgaagtcactggaggctcaggctgagaagtactctcagaaggaagaca 740
Query: 725 aatatgaagaagagattaaacttctgtctgacaaactgaaagaggctgagacccgtgctg 784
|||||||||| ||||| || |||| |||||||| ||||| |||||||| || || ||||
Sbjct: 741 aatatgaagaggagatcaaggttctctctgacaagctgaaggaggctgaaactcgggctg 800
Query: 785 aatttgcagagagaacagt 803
| |||||||||||| ||||
Sbjct: 801 agtttgcagagagatcagt 819
>gnl|UG|Mm#S7114452 Mouse skeletal muscle beta tropomyosin mRNA,
complete cds. /cds=p(35,889) /gb=M81086 /gi=202162
/ug=Mm.646 /len=2097
Length = 2097
Score = 258 bits (130), Expect = 5e-67
Identities = 352/426 (82%)
Strand = Plus / Plus
Query: 172 tgcaagcaggtggaggaggagctgacgcacctccagaagaagctgaaggggacagaggat 231
||||||||| ||||||| |||| | | ||||||||||||||||||||||||||||||
Sbjct: 140 tgcaagcagctggaggaagagcagcaggccctccagaagaagctgaaggggacagaggac 199
Query: 232 gagctggacaaatactccgagaacctgaaggacgcgcaggaaaagctggagctgagcgag 291
||| |||| || || |||||| | ||||||| || ||||| || ||||||| | |||
Sbjct: 200 gaggtggaaaagtattccgagtccgtgaaggatgcccaggagaaactggagcaggctgag 259
Query: 292 aagaaagcctccgacgccgaaggggatgtagcagctctcaatcggcgcatccaactcgtt 351
||||| ||| ||||||| |||| ||||| || |||| || || ||||| || |||||
Sbjct: 260 aagaaggccaccgacgctgaagcagatgtggcctctctgaaccgccgcattcagctcgta 319
Query: 352 gaggaggagttggacagggctcaggaacgactggccacagccctgcagaagcttgaggag 411
|||||||||||||| |||| ||||| || ||||| |||||| |||| ||||| ||||||
Sbjct: 320 gaggaggagttggatcgggcacaggagcgcctggctacagccttgcaaaagctggaggag 379
Query: 412 gcagaaaaggctgcagatgagagcgagagaggaatgaaggtgatagaaaaccgggccatg 471
|| || || || || |||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 380 gctgagaaagccgcggatgagagcgagagaggaatgaaggtcattgaaaaccgggccatg 439
Query: 472 aaagatgaggagaagatggagattcaggagatgcagctcaaagaggccaagcacattgcc 531
|| |||||||| ||||||||| | |||||||||||||| || || ||||||||||| ||
Sbjct: 440 aaggatgaggaaaagatggagctgcaggagatgcagctgaaggaagccaagcacatcgct 499
Query: 532 gaggaggccgaccgcaaatacgaggaggtagctcgtaagttggtcatcctggagggcgag 591
||||| | ||||||||||| |||||||| || | ||| |||| |||||||| || |||
Sbjct: 500 gaggactcagaccgcaaatatgaggaggtggccaggaagctggtgatcctggaaggggag 559
Query: 592 ctggag 597
||||||
Sbjct: 560 ctggag 565
Score = 117 bits (59), Expect = 1e-24
Identities = 74/79 (93%)
Strand = Plus / Plus
Query: 62 cagccatggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaacgcca 121
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 30 cagccatggacgccatcaagaagaagatgcagatgctgaaactggacaaggagaatgcca 89
Query: 122 tcgaccgggccgagcaggc 140
||||||| || ||||||||
Sbjct: 90 tcgaccgcgcggagcaggc 108
Score = 67.9 bits (34), Expect = 1e-09
Identities = 100/122 (81%)
Strand = Plus / Plus
Query: 718 gaggataaatatgaagaagagattaaacttctgtctgacaaactgaaagaggctgagacc 777
||||| ||||| ||||||||||| ||||||||| || || ||||||||||||||||||
Sbjct: 686 gaggacaaatacgaagaagagatcaaacttctggaggagaagctgaaagaggctgagacc 745
Query: 778 cgtgctgaatttgcagagagaacagttgcaaaactggaaaagaccatcgatgacctggaa 837
|| || || ||||| || ||| | || ||||| |||| || ||||| ||||| ||||||
Sbjct: 746 cgagcagagtttgctgaaagatctgtggcaaagttggagaaaaccattgatgatctggaa 805
Query: 838 ga 839
||
Sbjct: 806 ga 807
>gnl|UG|Ssc#S6089598 Z98799 pT7T318U Sus scrofa domestica cDNA clone
pAZ3A08 similar to alpha tropomyosin, mRNA sequence
/clone=pAZ3A08 /gb=Z98799 /gi=5706072 /ug=Ssc.13956
/len=1054
Length = 1054
Score = 244 bits (123), Expect = 7e-63
Identities = 411/507 (81%)
Strand = Plus / Plus
Query: 73 gccatcaagaagaagatgcagatgctgaagctggacaaggagaacgccatcgaccgggcc 132
|||||||||||||||||||| ||||| ||||| ||||||||||||||| | || || ||
Sbjct: 3 gccatcaagaagaagatgcaaatgctcaagctcgacaaggagaacgccttggatcgagcg 62
Query: 133 gagcaggcggagtcggataagaaagctgctgaggagaagtgcaagcaggtggaggaggag 192
|||||||||||| | |||||||| || || ||||| | | |||||||| |||| || |||
Sbjct: 63 gagcaggcggaggccgataagaaggcggcagaggacaggagcaagcagctggaagatgag 122
Query: 193 ctgacgcacctccagaagaagctgaaggggacagaggatgagctggacaaatactccgag 252
||| | || || |||||||| |||| || || ||||| ||||||||||| ||||||
Sbjct: 123 ctggtgtcgctgcaaaagaagctcaaggccaccgaagatgaactggacaaatattccgag 182
Query: 253 aacctgaaggacgcgcaggaaaagctggagctgagcgagaagaaagcctccgacgccgaa 312
|| || || || ||||| |||||||||||| ||||| || ||| |||| || |||
Sbjct: 183 gctctcaaagatgcccaggagaagctggagctggcggagaaaaaggccaccgatgctgaa 242
Query: 313 ggggatgtagcagctctcaatcggcgcatccaactcgttgaggaggagttggacagggct 372
| |||||||| |||| || | ||||||||||| |||||||| ||| ||||| | ||
Sbjct: 243 gccgatgtagcttctctgaacagacgcatccaactggttgaggaagagctggaccgtgcc 302
Query: 373 caggaacgactggccacagccctgcagaagcttgaggaggcagaaaaggctgcagatgag 432
||||| |||||||| ||||| | ||||| ||||||||||| || ||||| |||||||||
Sbjct: 303 caggagcgactggcaacagctttacagaaacttgaggaggctgagaaggcagcagatgag 362
Query: 433 agcgagagaggaatgaaggtgatagaaaaccgggccatgaaagatgaggagaagatggag 492
|| |||||||| ||||| || || |||| ||| ||| || ||||||||||| |||||
Sbjct: 363 agtgagagaggcatgaaagtcattgaaagccgagcccaaaaggatgaggagaaaatggaa 422
Query: 493 attcaggagatgcagctcaaagaggccaagcacattgccgaggaggccgaccgcaaatac 552
||||||||||| ||||| ||||| |||||||||||||| ||||| ||||||||||| ||
Sbjct: 423 attcaggagatccagctgaaagaagccaagcacattgctgaggatgccgaccgcaagtat 482
Query: 553 gaggaggtagctcgtaagttggtcatc 579
|| ||||| || |||||| ||||||||
Sbjct: 483 gaagaggtggcccgtaagctggtcatc 509
Score = 54.0 bits (27), Expect = 1e-05
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 715 aaggaggataaatatgaagaagagattaaacttctgtctgacaaactgaaagaggctgag 774
||||| || ||||||||||||||||| || | || |||||||| ||||| ||||||||
Sbjct: 645 aaggaagacaaatatgaagaagagatcaaggtcctttctgacaagctgaaggaggctgaa 704
Query: 775 acccgtgctgaatttgcagagag 797
|| || || || |||||||||||
Sbjct: 705 actcgggccgagtttgcagagag 727
>gnl|UG|Bt#S11975653 6664 MARC BSM Bos taurus cDNA 5', mRNA sequence
/clone_end=5' /gb=BF430381 /gi=11442478 /ti=480294234
/ug=Bt.12477 /len=1027
Length = 1027
Score = 208 bits (105), Expect = 4e-52
Identities = 183/209 (87%)
Strand = Plus / Plus
Query: 352 gaggaggagttggacagggctcaggaacgactggccacagccctgcagaagcttgaggag 411
||||||||| ||||| |||| ||||| || ||||| ||||||||||||||||| ||||||
Sbjct: 302 gaggaggagctggaccgggcacaggagcgtctggctacagccctgcagaagctggaggag 361
Query: 412 gcagaaaaggctgcagatgagagcgagagaggaatgaaggtgatagaaaaccgggccatg 471
|| || ||||| || |||||||||||||||||||||||||| || |||||||| || |||
Sbjct: 362 gctgagaaggcagctgatgagagcgagagaggaatgaaggtcatcgaaaaccgagctatg 421
Query: 472 aaagatgaggagaagatggagattcaggagatgcagctcaaagaggccaagcacattgcc 531
|| |||||||| ||||||||| | |||||||||||||| || |||||||||||||| |||
Sbjct: 422 aaggatgaggaaaagatggagctgcaggagatgcagctgaaggaggccaagcacatcgcc 481
Query: 532 gaggaggccgaccgcaaatacgaggaggt 560
||||| | ||||||||||| ||||||||
Sbjct: 482 gaggattcggaccgcaaatatgaggaggt 510
>gnl|UG|Hs#S3989649 Homo sapiens cDNA FLJ32003 fis, clone NT2RP7009397
/gb=AK056565 /gi=16552003 /ug=Hs.466088 /len=3108
Length = 3108
Score = 163 bits (82), Expect = 2e-38
Identities = 118/130 (90%)
Strand = Plus / Minus
Query: 178 caggtggaggaggagctgacgcacctccagaagaagctgaaggggacagaggatgagctg 237
||||||||||||||||||||||||||||||||||| || || ||||||||||| ||||||
Sbjct: 1353 caggtggaggaggagctgacgcacctccagaagaaactaaaagggacagaggacgagctg 1294
Query: 238 gacaaatactccgagaacctgaaggacgcgcaggaaaagctggagctgagcgagaagaaa 297
|| ||||| |||||| ||||||||||||||||||| ||||||||||| | ||||||||
Sbjct: 1293 gataaatattccgaggacctgaaggacgcgcaggagaagctggagctcacggagaagaag 1234
Query: 298 gcctccgacg 307
||||||||||
Sbjct: 1233 gcctccgacg 1224
>gnl|UG|Bt#S22877747 Bos taurus TPM3 mRNA for tropomyosin 3,
complete cds /cds=p(54,908) /gb=AB198072 /gi=57281700
/ug=Bt.9448 /len=1106
Length = 1106
Score = 151 bits (76), Expect = 8e-35
Identities = 394/500 (78%)
Strand = Plus / Plus
Query: 340 atccaactcgttgaggaggagttggacagggctcaggaacgactggccacagccctgcag 399
||||| || ||||| |||||| ||||| | ||||| || || |||||||| ||||||||
Sbjct: 327 atccagctggttgaagaggagctggaccgagctcaagagcgcctggccactgccctgcaa 386
Query: 400 aagcttgaggaggcagaaaaggctgcagatgagagcgagagaggaatgaaggtgatagaa 459
||||| ||||| || || || ||||| |||||||| |||||||| |||||||| || |||
Sbjct: 387 aagctggaggaagctgagaaagctgctgatgagagtgagagaggtatgaaggttattgaa 446
Query: 460 aaccgggccatgaaagatgaggagaagatggagattcaggagatgcagctcaaagaggcc 519
||||| ||| | |||||||| || || ||||| | ||||| || || |||||||| ||
Sbjct: 447 aaccgagccttaaaagatgaagaaaaaatggaactccaggaaatccaactcaaagaagct 506
Query: 520 aagcacattgccgaggaggccgaccgcaaatacgaggaggtagctcgtaagttggtcatc 579
||||||||||| || ||||| ||| | || || || ||||| ||||| |||||||| ||
Sbjct: 507 aagcacattgcagaagaggcagacaggaagtatgaagaggtggctcgcaagttggtgatt 566
Query: 580 ctggagggcgagctggagagggcagaggagcgtgccgaggtgtctgaactaaaatgtggt 639
| ||||| || ||||| | |||||||||| |||||| || | || |||||| |
Sbjct: 567 attgagggagacttggagcgcacagaggagcgagccgagctggcagagtctaaatgttct 626
Query: 640 gacctggaagaagaactcaagaatgtcaccaacaacctgaagtcgctagaggctgcatct 699
|| ||||| || || || |||||||||||||||||||| ||||| || |||||| |
Sbjct: 627 gagctggaggaggagctgaagaatgtcaccaacaacctcaagtctcttgaggctcaggcg 686
Query: 700 gaaaagtattctgaaaaggaggataaatatgaagaagagattaaacttctgtctgacaaa 759
|| ||||| ||| |||| || || |||||||| |||||||| || |||| | || |||
Sbjct: 687 gagaagtactctcaaaaagaagacaaatatgaggaagagataaagattcttaccgataaa 746
Query: 760 ctgaaagaggctgagacccgtgctgaatttgcagagagaacagttgcaaaactggaaaag 819
|| || ||||| |||||||||||||| ||||| |||||| | || || || |||||||||
Sbjct: 747 ctcaaggaggcagagacccgtgctgagtttgctgagagatcggtagccaagctggaaaag 806
Query: 820 accatcgatgacctggaaga 839
|| || ||||| |||||||
Sbjct: 807 acaattgatgatttggaaga 826
Score = 97.6 bits (49), Expect = 1e-18
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 67 atggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaacgc 119
||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 54 atggaggccatcaagaaaaagatgcagatgctgaagctggacaaggagaacgc 106
Score = 61.9 bits (31), Expect = 6e-08
Identities = 79/95 (83%)
Strand = Plus / Plus
Query: 205 cagaagaagctgaaggggacagaggatgagctggacaaatactccgagaacctgaaggac 264
|||||||||||||| ||||||||||| ||||||||||| || || || |||||||
Sbjct: 192 cagaagaagctgaaagggacagaggacgagctggacaagtattctgaagctttgaaggat 251
Query: 265 gcgcaggaaaagctggagctgagcgagaagaaagc 299
|| ||||| |||||||||||| |||||||||||
Sbjct: 252 gcccaggagaagctggagctggcagagaagaaagc 286
Database: UniGene(Bt+Hs+Ssc+Mm)
Posted date: Mar 18, 2005 8:01 PM
Number of letters in database: 222,131,506
Number of sequences in database: 151,043
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 1216
length of database: 222,131,506
effective HSP length: 19
effective length of query: 1197
effective length of database: 219,261,689
effective search space: 262456241733
effective search space used: 262456241733
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)