>20050322C-004827 (20050322C-004827) 20050322C-004827 CTTTCCAGCA GCTGCGGCCA GCGGTGCCGA CGTCAGGCCC TCCCCCAGCG GTGCTGACGT CGACGGCCGG GCAGGGTGAC CTCATCGCCC CGACGGCGGC CCTGCCGGGG GCGGGGAGAG GCAGGGGCGG CCCCCCGGCG TAGGCAAAGG CTCGGGGGCC GGGGCGCGGC TGCTGCAGCT CTTGCAAGAG CAGAGCCGAG CCGAGCGCCC GCCGCTGCCC GCCGCCCGCT GCGTGCGCCT CCGCGCCATG GCTGGCCTCA ACTCCCTGGA GGCGGTGAAA CGCAAGATCC AGGCCCTGCA GCAGCAGGCG GACGAGGCAG AGGATCGCGC GCAGGGCCTG CAGCGGGAGC TGGACGGCGA GCGCGAGCGG CGGGAGAAAG CCGAAGGGGA TGTAGCAGCT CTCAATCGGC GCATCCAACT CGTTGAGGAG GAGTTGGACA GGGCTCAGGA ACGACTGGCC ACAGCCCTGC AGAAGCTTGA GGAGGCAGAA AAGGCTGCAG ATGAGAGCGA GAGAGGAATG AAGGTGATAG AAAACCGGGC CATGAAAGAT GAGGAGAAGA TGGAGATTCA GGAGATGCAG CTCAAAGAGG CCAAGCACAT TGCCGAGGAG GCCGACCGCA AATACGAGGA GGTAGCTCGT AAGTTGGTCA TCCTGGAGGG CGAGCTGGAG AGGGCAGAGG AGCGTGCCGA GGTGTCTGAA CTAAAATGTG GTGACCTGGA AGAAGAACTC AAGAATGTCA CCAACAACCT GAAGTCGCTA GAGGCTGCAT CTGAAAAGTA TTCTGAAAAG GAGGATAAAT ATGAAGAAGA GATTAAACTT CTGTCTGACA AACTGAAAGA GGCTGAGACC CGTGCTGAAT TTGCAGAGAG AACAGTTGCA AAACTGGAAA AGACCATCGA TGACCTGGAA GAAAAACTTG CCCAGGCCAA AGAAGAGAAC GTGGGCTTAC ATCAGACACT GGATCAGACA CTAAACGAAC TAAACTGTAT ATAACCAAAA CAGAAGAGTC TCGTTCCATC AGAAACTCCA GAGCTACGTG TTTTTCTCTT CTCTTGTAAG AAGTTTCTTT TGTTATTGCC TCTTTGCTTT GCTGGAAATG TCAAGCAAAT TATGAATACG TGACCAAATA TTTTGTATCA GAAAAGCTTT GAGCACCAGT TAAATCTATT CCTTCCTTTT TTTCAGTGGC ACCAGCTTTT CAGCTCTATT TTATCCTAAA TTGC
Query= 20050322C-004827 (20050322C-004827) 20050322C-004827
(1224 letters)
Database: UniGene(Bt+Hs+Ssc+Mm)
151,043 sequences; 222,131,506 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gnl|UG|Hs#S7112518 PREDICTED: Homo sapiens similar to tropomyosi... 1063 0.0
Alignment gnl|UG|Mm#S11102429 Mus musculus tropomyosin 4, mRNA (cDNA clone... 846 0.0
Alignment gnl|UG|Hs#S3436485 601859996F1 NIH_MGC_61 Homo sapiens cDNA clon... 270 1e-70
Alignment gnl|UG|Mm#S9085693 Mus musculus 18-day embryo whole body cDNA, R... 244 7e-63
Alignment gnl|UG|Hs#S3989649 Homo sapiens cDNA FLJ32003 fis, clone NT2RP70... 224 7e-57
Alignment gnl|UG|Hs#S21311480 full-length cDNA clone CS0DK002YI10 of HeLa ... 224 7e-57
Alignment gnl|UG|Bt#S11975653 6664 MARC BSM Bos taurus cDNA 5', mRNA seque... 208 4e-52
Alignment gnl|UG|Mm#S7114452 Mouse skeletal muscle beta tropomyosin mRNA, ... 200 1e-49
Alignment gnl|UG|Ssc#S18260562 BP157053 full-length enriched swine cDNA li... 194 6e-48
Alignment gnl|UG|Ssc#S6089598 Z98799 pT7T318U Sus scrofa domestica cDNA cl... 172 2e-41
>gnl|UG|Hs#S7112518 PREDICTED: Homo sapiens similar to tropomyosin 4
(LOC285321), mRNA /cds=p(283,759) /gb=XM_208313
/gi=51463928 /ug=Hs.449194 /len=1364
Length = 1364
Score = 1063 bits (536), Expect = 0.0
Identities = 726/787 (92%), Gaps = 3/787 (0%)
Strand = Plus / Plus
Query: 384 aaggggatgtagcagctctcaatcggcgcatccaactcgttgaggaggagttggacaggg 443
|||| ||||| || || ||||| || |||||||| |||||||||||| ||||||||||||
Sbjct: 149 aaggtgatgtggccgccctcaaccgacgcatccagctcgttgaggagaagttggacaggg 208
Query: 444 ctcaggaacgactggccacagccctgcagaagcttgaggaggcagaaaaggctgcagatg 503
|||||||| |||||||||| |||| ||||||||| |||||||||||||| ||||||||||
Sbjct: 209 ctcaggaaagactggccacggccccgcagaagctggaggaggcagaaaaagctgcagatg 268
Query: 504 agagcgagagaggaatgaaggtgatagaaaaccgggccatgaaagatgaggagaagatgg 563
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 269 agagtgagagaggaatgaaggtgatagaaaaccgggccatgaaggatgaggagaagatgg 328
Query: 564 agattcaggagatgcagctcaaagaggccaagcacattgccgaggaggccgaccgcaaat 623
| ||||||||| |||||||||||||||||||||||||||| || ||||| ||||||||||
Sbjct: 329 aaattcaggagctgcagctcaaagaggccaagcacattgcggaagaggctgaccgcaaat 388
Query: 624 acgaggaggtagctcgtaagttggtcatcctggagggcgagctggagagggcagaggagc 683
|| |||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||
Sbjct: 389 actgggaggtagctcgtaagctggtcttcctggagggtgagctggagagggcagaggagc 448
Query: 684 gtgccgaggtgtctgaactaaaatgtggtgacctggaagaagaactcaagaatgtcacca 743
||| ||||||||||||||||||||||||||||| |||||||||||||||||||| || |
Sbjct: 449 gtgtggaggtgtctgaactaaaatgtggtgaccttgaagaagaactcaagaatgttacta 508
Query: 744 acaacctgaagtcgctagaggctgcatctgaaaagtattctgaaaaggaggataaatatg 803
|||| ||||| || || |||||||| |||||||||||||||||||||||||| |||| ||
Sbjct: 509 acaatctgaaatctctggaggctgcgtctgaaaagtattctgaaaaggaggacaaatgtg 568
Query: 804 aagaagagattaaacttctgtctgacaaactgaaagaggctgagacccgtgctgaatttg 863
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 569 aagaagaaattaaacttctgtgtgacaaactgaaagaggctgagacccgtgctgaatttg 628
Query: 864 cagagagaacagttgcaaaactggaaaagaccatcgatgacctggaagaaaaacttgccc 923
|||||||||| |||||||||||||||||||| || |||||||||||||| ||||||||||
Sbjct: 629 cagagagaacggttgcaaaactggaaaagacaattgatgacctggaagagaaacttgccc 688
Query: 924 aggccaaagaagagaacgtgggcttacatcagacactggatcagacactaaacgaactaa 983
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 689 aggccaaagaagagaacgtgggcttacatcagacactggatcagacactaaacgagctta 748
Query: 984 actgtatataaccaaaacagaagagtctcgttccatcagaaactccagagctacgt--gt 1041
||||||||||| |||||||||||||||| |||||| |||||||||| ||||| ||| ||
Sbjct: 749 actgtatataagcaaaacagaagagtcttgttccaacagaaactccggagctccgtgggt 808
Query: 1042 ttttctcttctcttgtaagaagtttcttttgttattgcc-tctttgctttgctggaaatg 1100
||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||
Sbjct: 809 ctttctcttctcttgtaagaagttccttttgttattgccatcttcgctttgctggaaatg 868
Query: 1101 tcaagcaaattatgaatacgtgaccaaatattttgtatcagaaaagctttgagcaccagt 1160
||||||||||||||||||| |||||||||||||||||| || ||||||||||||| |||
Sbjct: 869 tcaagcaaattatgaatacatgaccaaatattttgtattggagaagctttgagcacgagt 928
Query: 1161 taaatct 1167
|||||||
Sbjct: 929 taaatct 935
>gnl|UG|Mm#S11102429 Mus musculus tropomyosin 4, mRNA (cDNA clone
MGC:38384 IMAGE:5345587), complete cds /cds=p(38,784)
/gb=BC023701 /gi=23958443 /ug=Mm.295124 /len=2118
Length = 2118
Score = 846 bits (427), Expect = 0.0
Identities = 667/747 (89%)
Strand = Plus / Plus
Query: 248 atggctggcctcaactccctggaggcggtgaaacgcaagatccaggccctgcagcagcag 307
||||| ||||||||||| |||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 38 atggccggcctcaactcactggaggcagtgaagcgcaagatccaggccctgcagcagcag 97
Query: 308 gcggacgaggcagaggatcgcgcgcagggcctgcagcgggagctggacggcgagcgcgag 367
|| ||||| ||||||||||||||||| ||||||||||| || ||||| ||||||||||||
Sbjct: 98 gcagacgacgcagaggatcgcgcgcaaggcctgcagcgcgaactggatggcgagcgcgag 157
Query: 368 cggcgggagaaagccgaaggggatgtagcagctctcaatcggcgcatccaactcgttgag 427
||||| |||||||| ||||| |||| ||| |||||||| || ||||||||||| | |||
Sbjct: 158 cggcgcgagaaagctgaaggagatgcagccgctctcaaccgccgcatccaactgctggag 217
Query: 428 gaggagttggacagggctcaggaacgactggccacagccctgcagaagcttgaggaggca 487
||||| ||||| |||||||||| | |||||||||||||||||||| || || ||||||
Sbjct: 218 gaggaactggaccgggctcaggagcagctggccacagccctgcagaatctggaagaggca 277
Query: 488 gaaaaggctgcagatgagagcgagagaggaatgaaggtgatagaaaaccgggccatgaaa 547
|| |||||||| |||||||| |||||||| |||||||| ||||| ||||| |||||||||
Sbjct: 278 gagaaggctgctgatgagagtgagagaggcatgaaggtaatagagaaccgagccatgaaa 337
Query: 548 gatgaggagaagatggagattcaggagatgcagctcaaagaggccaagcacattgccgag 607
|||||||| ||||||||||| | |||||||||||||||||| ||||||||||| | ||
Sbjct: 338 gatgaggaaaagatggagatcctggagatgcagctcaaagaagccaagcacatcactgat 397
Query: 608 gaggccgaccgcaaatacgaggaggtagctcgtaagttggtcatcctggagggcgagctg 667
|| ||||||||||| || |||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 398 gaagccgaccgcaagtatgaggaggttgctcgtaagttggtcatcctggagggtgagctg 457
Query: 668 gagagggcagaggagcgtgccgaggtgtctgaactaaaatgtggtgacctggaagaagaa 727
| || ||||||||||| || ||||| ||||||||||| ||||||||||||||||||||
Sbjct: 458 aaaagagcagaggagcgggcggaggtatctgaactaaagtgtggtgacctggaagaagag 517
Query: 728 ctcaagaatgtcaccaacaacctgaagtcgctagaggctgcatctgaaaagtattctgaa 787
||||||||||| || ||||| ||||| || || |||||||| ||||||||||||||||||
Sbjct: 518 ctcaagaatgtaactaacaatctgaaatcactggaggctgcttctgaaaagtattctgaa 577
Query: 788 aaggaggataaatatgaagaagagattaaacttctgtctgacaaactgaaagaggctgag 847
||||||||||||||||||||||| || || |||||||||||||| ||||| |||||||||
Sbjct: 578 aaggaggataaatatgaagaagaaatcaagcttctgtctgacaagctgaaggaggctgag 637
Query: 848 acccgtgctgaatttgcagagagaacagttgcaaaactggaaaagaccatcgatgacctg 907
||||| ||||| |||||||| || |||||| | |||||||| ||||| ||||||||||||
Sbjct: 638 acccgagctgagtttgcagaaaggacagtttctaaactggagaagacaatcgatgacctg 697
Query: 908 gaagaaaaacttgcccaggccaaagaagagaacgtgggcttacatcagacactggatcag 967
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 698 gaagaaaaacttgcccaggccaaagaagagaatgtgggcttacatcagacactggaccag 757
Query: 968 acactaaacgaactaaactgtatataa 994
|||||||||||||| ||||||||||||
Sbjct: 758 acactaaacgaacttaactgtatataa 784
Score = 77.8 bits (39), Expect = 1e-12
Identities = 66/75 (88%)
Strand = Plus / Plus
Query: 1089 ttgctggaaatgtcaagcaaattatgaatacgtgaccaaatattttgtatcagaaaagct 1148
|||| ||||||| |||||| || |||||| | |||||||||||||||| | ||| |||||
Sbjct: 886 ttgcaggaaatgccaagcagataatgaattcatgaccaaatattttgtgttagacaagct 945
Query: 1149 ttgagcaccagttaa 1163
|||||||||||||||
Sbjct: 946 ttgagcaccagttaa 960
>gnl|UG|Hs#S3436485 601859996F1 NIH_MGC_61 Homo sapiens cDNA clone
IMAGE:4072559 5', mRNA sequence /clone=IMAGE:4072559
/clone_end=5' /gb=BG506071 /gi=13467588 /ti=46409918
/ug=Hs.447786 /len=924
Length = 924
Score = 270 bits (136), Expect = 1e-70
Identities = 218/239 (91%), Gaps = 6/239 (2%)
Strand = Plus / Plus
Query: 943 gggcttacatcagacactggatcagacactaaacgaactaaactgtatataaccaaaaca 1002
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 121 gggcttacatcagacactggatcagacactaaacgaacttaactgtatataagcaaaaca 180
Query: 1003 gaagagtctcgttccatcagaaactccagagctacgt--gtttttc-tcttctcttgtaa 1059
||||||||| |||||| ||||||||| ||||| ||| || |||| |||||||||||||
Sbjct: 181 gaagagtcttgttccaacagaaactctggagctccgtgggtctttcgtcttctcttgtaa 240
Query: 1060 gaagtttcttttgttattgcc-tctttgctttgctggaaatgtcaagcaaattatgaata 1118
|||||| ||| |||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct: 241 gaagttccttgtgttattgccatcttcgctttgctggaaatgtcaagcaaattatgaata 300
Query: 1119 cgtgaccaaatattttgtatcagaaaagctttgagcaccagttaaatct-attccttcc 1176
| |||||||||| |||||||| || ||||| |||||||||||||||||| |||||||||
Sbjct: 301 catgaccaaata-tttgtatcggagaagctatgagcaccagttaaatctcattccttcc 358
>gnl|UG|Mm#S9085693 Mus musculus 18-day embryo whole body cDNA,
RIKEN full-length enriched library, clone:1100001I18
product:tropomyosin 2, beta, full insert sequence
/cds=p(83,937) /gb=AK003175 /gi=12833676 /ug=Mm.121878
/len=1703
Length = 1703
Score = 244 bits (123), Expect = 7e-63
Identities = 426/527 (80%)
Strand = Plus / Plus
Query: 410 cgcatccaactcgttgaggaggagttggacagggctcaggaacgactggccacagccctg 469
|||||||| || ||||||||||||||||| | |||||||| || ||||||||||| |||
Sbjct: 353 cgcatccagctggttgaggaggagttggatcgtgctcaggagcgtctggccacagctctg 412
Query: 470 cagaagcttgaggaggcagaaaaggctgcagatgagagcgagagaggaatgaaggtgata 529
|||||||| |||||||| || ||||||||||||||||| |||||||| ||||| || ||
Sbjct: 413 cagaagctggaggaggccgagaaggctgcagatgagagtgagagaggcatgaaagtcatt 472
Query: 530 gaaaaccgggccatgaaagatgaggagaagatggagattcaggagatgcagctcaaagag 589
|||| ||| ||| |||||||| || |||||||||||||||||||| ||||| ||||||
Sbjct: 473 gaaagccgagcccaaaaagatgaagaaaagatggagattcaggagatccagctgaaagag 532
Query: 590 gccaagcacattgccgaggaggccgaccgcaaatacgaggaggtagctcgtaagttggtc 649
|||||||||||||| || || || ||||| || || || ||||| || |||||| |||||
Sbjct: 533 gccaagcacattgctgaagatgctgaccggaagtatgaagaggtggcccgtaagctggtc 592
Query: 650 atcctggagggcgagctggagagggcagaggagcgtgccgaggtgtctgaactaaaatgt 709
||| | ||| |||| ||||| | ||||||||||| || ||| | || ||| ||||||
Sbjct: 593 atcatcgagagcgacctggaacgtgcagaggagcgggctgagctctcagaaggcaaatgt 652
Query: 710 ggtgacctggaagaagaactcaagaatgtcaccaacaacctgaagtcgctagaggctgca 769
| || || ||||||||| | || | || || |||||| ||||||| || ||||||
Sbjct: 653 gccgagcttgaagaagaattgaaaacggtgacgaacaacttgaagtcactggaggctcag 712
Query: 770 tctgaaaagtattctgaaaaggaggataaatatgaagaagagattaaacttctgtctgac 829
|||| ||||| ||| | ||||| || ||||||||||| ||||| || |||| ||||||
Sbjct: 713 gctgagaagtactctcagaaggaagacaaatatgaagaggagatcaaggttctctctgac 772
Query: 830 aaactgaaagaggctgagacccgtgctgaatttgcagagagaacagttgcaaaactggaa 889
|| ||||| |||||||| || || ||||| |||||||||||| |||| | ||| ||||
Sbjct: 773 aagctgaaggaggctgaaactcgggctgagtttgcagagagatcagtaaccaaattggag 832
Query: 890 aagaccatcgatgacctggaagaaaaacttgcccaggccaaagaaga 936
|| | ||| |||||| | ||||| ||| | ||||| |||||||||||
Sbjct: 833 aaaagcattgatgacttagaagagaaagtggcccatgccaaagaaga 879
>gnl|UG|Hs#S3989649 Homo sapiens cDNA FLJ32003 fis, clone
NT2RP7009397 /gb=AK056565 /gi=16552003 /ug=Hs.466088
/len=3108
Length = 3108
Score = 224 bits (113), Expect = 7e-57
Identities = 128/133 (96%)
Strand = Plus / Minus
Query: 248 atggctggcctcaactccctggaggcggtgaaacgcaagatccaggccctgcagcagcag 307
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 atggccggcctcaactccctggaggcggtgaaacgcaagatccaggccctgcagcagcag 772
Query: 308 gcggacgaggcagaggatcgcgcgcagggcctgcagcgggagctggacggcgagcgcgag 367
||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 gcggacgaggcggaagaccgcgcgcagggcctgcagcgggagctggacggcgagcgcgag 712
Query: 368 cggcgggagaaag 380
||||| |||||||
Sbjct: 711 cggcgcgagaaag 699
Score = 200 bits (101), Expect = 1e-49
Identities = 167/184 (90%), Gaps = 5/184 (2%)
Strand = Plus / Minus
Query: 1 ctttccagcagctgcggccagcggtgccgacgtcaggccctcccccagcggtgctgacgt 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1073 ctttccagcagctgtggccagcggtgccgacgtcaggccctcccccagcggtgctgacgt 1014
Query: 61 cgacggccgggcagggtgacctcatcgccccgacggcggccctgcc-gggggcggggaga 119
|| ||| | ||| |||||||||||||||||||||||| ||| || |||||||||||||
Sbjct: 1013 cggcggtccggccgggtgacctcatcgccccgacggcagccggcccggggggcggggaga 954
Query: 120 ggcaggggcggccccccggcgtaggcaaaggc-tcgggggccggggcgcggctgctgcag 178
||| |||||||||||| ||| |||||||||| | ||||||||||||||||||| |||||
Sbjct: 953 ggcgggggcggccccc--gcgcaggcaaaggcttggggggccggggcgcggctg-tgcag 897
Query: 179 ctct 182
||||
Sbjct: 896 ctct 893
>gnl|UG|Hs#S21311480 full-length cDNA clone CS0DK002YI10 of HeLa
cells Cot 25-normalized of Homo sapiens (human)
/gb=CR590682 /gi=50471489 /ug=Hs.300772 /len=1735
Length = 1735
Score = 224 bits (113), Expect = 7e-57
Identities = 215/249 (86%)
Strand = Plus / Plus
Query: 422 gttgaggaggagttggacagggctcaggaacgactggccacagccctgcagaagcttgag 481
|||||||||||| ||||| |||| ||||| || ||||| ||||||||||||||||| |||
Sbjct: 377 gttgaggaggagctggaccgggcccaggagcgcctggctacagccctgcagaagctggag 436
Query: 482 gaggcagaaaaggctgcagatgagagcgagagaggaatgaaggtgatagaaaaccgggcc 541
||||| || ||||| || |||||||||||||||||||||||||| || ||||||||||||
Sbjct: 437 gaggccgagaaggcggctgatgagagcgagagaggaatgaaggtcatcgaaaaccgggcc 496
Query: 542 atgaaagatgaggagaagatggagattcaggagatgcagctcaaagaggccaagcacatt 601
||||| ||||||||||||||||| | |||||||||||||| || ||||||||||||||
Sbjct: 497 atgaaggatgaggagaagatggaactgcaggagatgcagctgaaggaggccaagcacatc 556
Query: 602 gccgaggaggccgaccgcaaatacgaggaggtagctcgtaagttggtcatcctggagggc 661
|| ||||| | ||||||||||| || ||||| || | ||| |||| |||||||| ||
Sbjct: 557 gctgaggattcagaccgcaaatatgaagaggtggccaggaagctggtgatcctggaagga 616
Query: 662 gagctggag 670
|||||||||
Sbjct: 617 gagctggag 625
Score = 54.0 bits (27), Expect = 1e-05
Identities = 96/119 (80%)
Strand = Plus / Plus
Query: 794 gataaatatgaagaagagattaaacttctgtctgacaaactgaaagaggctgagacccgt 853
|||||||||||||| ||||| ||||| || || || ||||| ||||||||||||||
Sbjct: 749 gataaatatgaagaggagatcaaactgttggaggagaagctgaaggaggctgagacccga 808
Query: 854 gctgaatttgcagagagaacagttgcaaaactggaaaagaccatcgatgacctggaaga 912
|| || ||||| ||||| | || ||||| |||| || |||||||||||||| |||||
Sbjct: 809 gcagagtttgccgagaggtctgtggcaaagttggagaaaaccatcgatgacctagaaga 867
>gnl|UG|Bt#S11975653 6664 MARC BSM Bos taurus cDNA 5', mRNA sequence
/clone_end=5' /gb=BF430381 /gi=11442478 /ti=480294234
/ug=Bt.12477 /len=1027
Length = 1027
Score = 208 bits (105), Expect = 4e-52
Identities = 183/209 (87%)
Strand = Plus / Plus
Query: 425 gaggaggagttggacagggctcaggaacgactggccacagccctgcagaagcttgaggag 484
||||||||| ||||| |||| ||||| || ||||| ||||||||||||||||| ||||||
Sbjct: 302 gaggaggagctggaccgggcacaggagcgtctggctacagccctgcagaagctggaggag 361
Query: 485 gcagaaaaggctgcagatgagagcgagagaggaatgaaggtgatagaaaaccgggccatg 544
|| || ||||| || |||||||||||||||||||||||||| || |||||||| || |||
Sbjct: 362 gctgagaaggcagctgatgagagcgagagaggaatgaaggtcatcgaaaaccgagctatg 421
Query: 545 aaagatgaggagaagatggagattcaggagatgcagctcaaagaggccaagcacattgcc 604
|| |||||||| ||||||||| | |||||||||||||| || |||||||||||||| |||
Sbjct: 422 aaggatgaggaaaagatggagctgcaggagatgcagctgaaggaggccaagcacatcgcc 481
Query: 605 gaggaggccgaccgcaaatacgaggaggt 633
||||| | ||||||||||| ||||||||
Sbjct: 482 gaggattcggaccgcaaatatgaggaggt 510
>gnl|UG|Mm#S7114452 Mouse skeletal muscle beta tropomyosin mRNA,
complete cds. /cds=p(35,889) /gb=M81086 /gi=202162
/ug=Mm.646 /len=2097
Length = 2097
Score = 200 bits (101), Expect = 1e-49
Identities = 221/261 (84%)
Strand = Plus / Plus
Query: 410 cgcatccaactcgttgaggaggagttggacagggctcaggaacgactggccacagccctg 469
||||| || ||||| |||||||||||||| |||| ||||| || ||||| |||||| ||
Sbjct: 305 cgcattcagctcgtagaggaggagttggatcgggcacaggagcgcctggctacagccttg 364
Query: 470 cagaagcttgaggaggcagaaaaggctgcagatgagagcgagagaggaatgaaggtgata 529
|| ||||| |||||||| || || || || |||||||||||||||||||||||||| ||
Sbjct: 365 caaaagctggaggaggctgagaaagccgcggatgagagcgagagaggaatgaaggtcatt 424
Query: 530 gaaaaccgggccatgaaagatgaggagaagatggagattcaggagatgcagctcaaagag 589
||||||||||||||||| |||||||| ||||||||| | |||||||||||||| || ||
Sbjct: 425 gaaaaccgggccatgaaggatgaggaaaagatggagctgcaggagatgcagctgaaggaa 484
Query: 590 gccaagcacattgccgaggaggccgaccgcaaatacgaggaggtagctcgtaagttggtc 649
||||||||||| || ||||| | ||||||||||| |||||||| || | ||| ||||
Sbjct: 485 gccaagcacatcgctgaggactcagaccgcaaatatgaggaggtggccaggaagctggtg 544
Query: 650 atcctggagggcgagctggag 670
|||||||| || |||||||||
Sbjct: 545 atcctggaaggggagctggag 565
Score = 67.9 bits (34), Expect = 1e-09
Identities = 100/122 (81%)
Strand = Plus / Plus
Query: 791 gaggataaatatgaagaagagattaaacttctgtctgacaaactgaaagaggctgagacc 850
||||| ||||| ||||||||||| ||||||||| || || ||||||||||||||||||
Sbjct: 686 gaggacaaatacgaagaagagatcaaacttctggaggagaagctgaaagaggctgagacc 745
Query: 851 cgtgctgaatttgcagagagaacagttgcaaaactggaaaagaccatcgatgacctggaa 910
|| || || ||||| || ||| | || ||||| |||| || ||||| ||||| ||||||
Sbjct: 746 cgagcagagtttgctgaaagatctgtggcaaagttggagaaaaccattgatgatctggaa 805
Query: 911 ga 912
||
Sbjct: 806 ga 807
>gnl|UG|Ssc#S18260562 BP157053 full-length enriched swine cDNA
library, adult spleen Sus scrofa cDNA clone SPL010009B03
5', mRNA sequence /clone=SPL010009B03 /clone_end=5'
/gb=BP157053 /gi=40406526 /ug=Ssc.20571 /len=893
Length = 893
Score = 194 bits (98), Expect = 6e-48
Identities = 209/246 (84%)
Strand = Plus / Plus
Query: 425 gaggaggagttggacagggctcaggaacgactggccacagccctgcagaagcttgaggag 484
||||||||| ||||| |||| ||||| || ||||||||||||||||| ||||| ||||||
Sbjct: 394 gaggaggagctggaccgggcgcaggagcgtctggccacagccctgcaaaagctggaggag 453
Query: 485 gcagaaaaggctgcagatgagagcgagagaggaatgaaggtgatagaaaaccgggccatg 544
|| | ||||| || |||||||| || |||||||||||||| || |||||||| ||||||
Sbjct: 454 gccgggaaggcagctgatgagagtgaaagaggaatgaaggtcattgaaaaccgagccatg 513
Query: 545 aaagatgaggagaagatggagattcaggagatgcagctcaaagaggccaagcacattgcc 604
|| |||||||| ||||||||| | |||||||||||||| || |||||||||||||| ||
Sbjct: 514 aaggatgaggaaaagatggagctgcaggagatgcagctgaaggaggccaagcacatcgct 573
Query: 605 gaggaggccgaccgcaaatacgaggaggtagctcgtaagttggtcatcctggagggcgag 664
||||| | ||||||||||| |||||||| || | ||| |||| |||||||| || |||
Sbjct: 574 gaggattcagaccgcaaatatgaggaggtggccaggaagctggtgatcctggaaggagag 633
Query: 665 ctggag 670
||||||
Sbjct: 634 ctggag 639
Score = 60.0 bits (30), Expect = 2e-07
Identities = 99/122 (81%)
Strand = Plus / Plus
Query: 791 gaggataaatatgaagaagagattaaacttctgtctgacaaactgaaagaggctgagacc 850
||||||||||||||||| ||||| ||||| ||| || || || || ||||||||||||
Sbjct: 760 gaggataaatatgaagaggagatcaaactgctggaagagaagctaaaggaggctgagacc 819
Query: 851 cgtgctgaatttgcagagagaacagttgcaaaactggaaaagaccatcgatgacctggaa 910
|| || || ||||| || || | || ||||| |||| || ||||||||||||||||||
Sbjct: 820 cgagcagagtttgccgaaaggtcggtggcaaagttggagaaaaccatcgatgacctggaa 879
Query: 911 ga 912
||
Sbjct: 880 ga 881
>gnl|UG|Ssc#S6089598 Z98799 pT7T318U Sus scrofa domestica cDNA clone
pAZ3A08 similar to alpha tropomyosin, mRNA sequence
/clone=pAZ3A08 /gb=Z98799 /gi=5706072 /ug=Ssc.13956
/len=1054
Length = 1054
Score = 172 bits (87), Expect = 2e-41
Identities = 204/243 (83%)
Strand = Plus / Plus
Query: 410 cgcatccaactcgttgaggaggagttggacagggctcaggaacgactggccacagccctg 469
||||||||||| |||||||| ||| ||||| | || ||||| |||||||| ||||| |
Sbjct: 267 cgcatccaactggttgaggaagagctggaccgtgcccaggagcgactggcaacagcttta 326
Query: 470 cagaagcttgaggaggcagaaaaggctgcagatgagagcgagagaggaatgaaggtgata 529
||||| ||||||||||| || ||||| ||||||||||| |||||||| ||||| || ||
Sbjct: 327 cagaaacttgaggaggctgagaaggcagcagatgagagtgagagaggcatgaaagtcatt 386
Query: 530 gaaaaccgggccatgaaagatgaggagaagatggagattcaggagatgcagctcaaagag 589
|||| ||| ||| || ||||||||||| ||||| ||||||||||| ||||| |||||
Sbjct: 387 gaaagccgagcccaaaaggatgaggagaaaatggaaattcaggagatccagctgaaagaa 446
Query: 590 gccaagcacattgccgaggaggccgaccgcaaatacgaggaggtagctcgtaagttggtc 649
|||||||||||||| ||||| ||||||||||| || || ||||| || |||||| |||||
Sbjct: 447 gccaagcacattgctgaggatgccgaccgcaagtatgaagaggtggcccgtaagctggtc 506
Query: 650 atc 652
|||
Sbjct: 507 atc 509
Score = 54.0 bits (27), Expect = 1e-05
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 788 aaggaggataaatatgaagaagagattaaacttctgtctgacaaactgaaagaggctgag 847
||||| || ||||||||||||||||| || | || |||||||| ||||| ||||||||
Sbjct: 645 aaggaagacaaatatgaagaagagatcaaggtcctttctgacaagctgaaggaggctgaa 704
Query: 848 acccgtgctgaatttgcagagag 870
|| || || || |||||||||||
Sbjct: 705 actcgggccgagtttgcagagag 727
Database: UniGene(Bt+Hs+Ssc+Mm)
Posted date: Mar 18, 2005 8:01 PM
Number of letters in database: 222,131,506
Number of sequences in database: 151,043
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 1224
length of database: 222,131,506
effective HSP length: 19
effective length of query: 1205
effective length of database: 219,261,689
effective search space: 264210335245
effective search space used: 264210335245
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)