>20050322C-004828 (20050322C-004828) 20050322C-004828 ACAGCAGCGA GTGGCGGCTA GCCCAGCCGG CCTGGGCTTG GGCCTCCTCC AGACTCGCCC CGCAGCAGGG CGGTGCACCC CAGGAGCCTA TAAGGGCTTC TCCTCCACCC GGCCGGCTCA CTCGACACCG ACGCCGCTGC CGCCGCAGGC CCCTCCACGC CCACACCCCC TACCCACTGC CCAGCCATGG AGGCCATCAA GAAGAAGATG CAGATGCTGA AGCTGGACAA GGAGAACGCC ATCGACCGGG CCGAGCAGGC GGAGTCGGAT AAGAAAGCTG CTGAGGAGAA GTGCAAGCAG GTGGAGGAGG AGCTGACGCA CCTCCAGAAG AAGCTGAAGG GGACAGAGGA TGAGCTGGAC AAATACTCCG AGAACCTGAA GGACGCGCAG GAAAAGCTGG AGTTGAGCGA GAAGAAAGCC TCCGACGCCG AAGGGGATGT AGCAGCTCTC AATCGGCGCA TCCAACTCGT TGAGGAGGAG TTGGACAGGG CTCAGGAACG ACTGGCCACA GCCCTGCAGA AGCTTGAGGA GGCAGAAAAG GCTGCAGATG AGAGCGAGAG AGGAATGAAG GTGATAGAAA ACCGGGCCAT GAAAGATGAG GAGAAGATGG AGATTCAGGA GATGCAGCTC AAAGAGGCCA AGCACATTGC CGAGGAGGCC GACCGCAAAT ACGAGGAGGT AGCTCGTAAG TTGGTCATCC TGGAGGGCGA GCTGGAGAGG GCAGAGGAGC GTGCCGAGGT GTCTGAACTA AAATGTGGTG ACCTGGAAGA AGAACTCAAG AATGTCACCA ACAACCTGAA GTCGCTAGAG GCTGCATCTG AAAAGTATTC TGAAAAGGAG GATAAATATG AAGAAGAGAT TAAACTTCTG TCTGACAAAC TGAAAGAGGC TGAGACCCGT GCTGAATTTG CAGAGAGAAC AGTTGCAAAA CTGGAAAAGA CCATCGATGA CCTGGAAGAA AAACTTGCCC AGGCCAAAGA AAAGGACGTG GGCTTACATC AGACACTGGA TCAGACACTT AACGAACTAA ACTGTATATA AACCAAAACA GAAAAGTCTC GTTCCATCAG AAACTCCAGA GCTACGTGTT TTTCTCTTCT CNTTGTAGAA GTTNCTTTNG NNTATGCTCT TNGCTTNGCT GGAAATGTCA GCAATTNATG ATACGTGACC AATATTTTGT ATCNGAAAGC TTTGAGCACC AGTAATCNAT CCTTCTTTTT TTCAGTGGCA CAGCTTT
Query= 20050322C-004828 (20050322C-004828) 20050322C-004828
(1237 letters)
Database: UniGene(Bt+Hs+Ssc+Mm)
151,043 sequences; 222,131,506 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gnl|UG|Hs#S7112518 PREDICTED: Homo sapiens similar to tropomyosi... 864 0.0
Alignment gnl|UG|Mm#S11102429 Mus musculus tropomyosin 4, mRNA (cDNA clone... 658 0.0
Alignment gnl|UG|Ssc#S18260562 BP157053 full-length enriched swine cDNA li... 287 6e-76
Alignment gnl|UG|Mm#S7114452 Mouse skeletal muscle beta tropomyosin mRNA, ... 250 1e-64
Alignment gnl|UG|Mm#S9085693 Mus musculus 18-day embryo whole body cDNA, R... 240 1e-61
Alignment gnl|UG|Ssc#S6089598 Z98799 pT7T318U Sus scrofa domestica cDNA cl... 236 2e-60
Alignment gnl|UG|Hs#S21311480 full-length cDNA clone CS0DK002YI10 of HeLa ... 224 7e-57
Alignment gnl|UG|Bt#S11975653 6664 MARC BSM Bos taurus cDNA 5', mRNA seque... 208 4e-52
Alignment gnl|UG|Hs#S3989649 Homo sapiens cDNA FLJ32003 fis, clone NT2RP70... 155 5e-36
Alignment gnl|UG|Bt#S22877747 Bos taurus TPM3 mRNA for tropomyosin 3, comp... 151 8e-35
>gnl|UG|Hs#S7112518 PREDICTED: Homo sapiens similar to tropomyosin 4
(LOC285321), mRNA /cds=p(283,759) /gb=XM_208313
/gi=51463928 /ug=Hs.449194 /len=1364
Length = 1364
Score = 864 bits (436), Expect = 0.0
Identities = 696/777 (89%), Gaps = 9/777 (1%)
Strand = Plus / Plus
Query: 431 aaggggatgtagcagctctcaatcggcgcatccaactcgttgaggaggagttggacaggg 490
|||| ||||| || || ||||| || |||||||| |||||||||||| ||||||||||||
Sbjct: 149 aaggtgatgtggccgccctcaaccgacgcatccagctcgttgaggagaagttggacaggg 208
Query: 491 ctcaggaacgactggccacagccctgcagaagcttgaggaggcagaaaaggctgcagatg 550
|||||||| |||||||||| |||| ||||||||| |||||||||||||| ||||||||||
Sbjct: 209 ctcaggaaagactggccacggccccgcagaagctggaggaggcagaaaaagctgcagatg 268
Query: 551 agagcgagagaggaatgaaggtgatagaaaaccgggccatgaaagatgaggagaagatgg 610
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 269 agagtgagagaggaatgaaggtgatagaaaaccgggccatgaaggatgaggagaagatgg 328
Query: 611 agattcaggagatgcagctcaaagaggccaagcacattgccgaggaggccgaccgcaaat 670
| ||||||||| |||||||||||||||||||||||||||| || ||||| ||||||||||
Sbjct: 329 aaattcaggagctgcagctcaaagaggccaagcacattgcggaagaggctgaccgcaaat 388
Query: 671 acgaggaggtagctcgtaagttggtcatcctggagggcgagctggagagggcagaggagc 730
|| |||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||
Sbjct: 389 actgggaggtagctcgtaagctggtcttcctggagggtgagctggagagggcagaggagc 448
Query: 731 gtgccgaggtgtctgaactaaaatgtggtgacctggaagaagaactcaagaatgtcacca 790
||| ||||||||||||||||||||||||||||| |||||||||||||||||||| || |
Sbjct: 449 gtgtggaggtgtctgaactaaaatgtggtgaccttgaagaagaactcaagaatgttacta 508
Query: 791 acaacctgaagtcgctagaggctgcatctgaaaagtattctgaaaaggaggataaatatg 850
|||| ||||| || || |||||||| |||||||||||||||||||||||||| |||| ||
Sbjct: 509 acaatctgaaatctctggaggctgcgtctgaaaagtattctgaaaaggaggacaaatgtg 568
Query: 851 aagaagagattaaacttctgtctgacaaactgaaagaggctgagacccgtgctgaatttg 910
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 569 aagaagaaattaaacttctgtgtgacaaactgaaagaggctgagacccgtgctgaatttg 628
Query: 911 cagagagaacagttgcaaaactggaaaagaccatcgatgacctggaagaaaaacttgccc 970
|||||||||| |||||||||||||||||||| || |||||||||||||| ||||||||||
Sbjct: 629 cagagagaacggttgcaaaactggaaaagacaattgatgacctggaagagaaacttgccc 688
Query: 971 aggccaaagaaaaggacgtgggcttacatcagacactggatcagacacttaacgaactaa 1030
||||||||||| || |||||||||||||||||||||||||||||||||| ||||| || |
Sbjct: 689 aggccaaagaagagaacgtgggcttacatcagacactggatcagacactaaacgagctta 748
Query: 1031 actgtatataaaccaaaacagaaaagtctcgttccatcagaaactccagagctacgt--g 1088
||||||||| || |||||||||| ||||| |||||| |||||||||| ||||| ||| |
Sbjct: 749 actgtatat-aagcaaaacagaagagtcttgttccaacagaaactccggagctccgtggg 807
Query: 1089 tttttctcttctcnttgtagaagttnctttngnntatgc--tcttngcttngctggaaat 1146
| ||||||||||| | ||||||| |||| | ||| |||| |||| |||||||||
Sbjct: 808 tctttctcttctcttgtaagaagttccttttgttattgccatcttcgctttgctggaaat 867
Query: 1147 gtc-agcaattnatg-atacgtgacc-aatattttgtatcnga-aagctttgagcac 1199
||| ||||| | ||| |||| ||||| |||||||||||| || |||||||||||||
Sbjct: 868 gtcaagcaaattatgaatacatgaccaaatattttgtattggagaagctttgagcac 924
>gnl|UG|Mm#S11102429 Mus musculus tropomyosin 4, mRNA (cDNA clone
MGC:38384 IMAGE:5345587), complete cds /cds=p(38,784)
/gb=BC023701 /gi=23958443 /ug=Mm.295124 /len=2118
Length = 2118
Score = 658 bits (332), Expect = 0.0
Identities = 551/624 (88%)
Strand = Plus / Plus
Query: 430 gaaggggatgtagcagctctcaatcggcgcatccaactcgttgaggaggagttggacagg 489
||||| |||| ||| |||||||| || ||||||||||| | |||||||| ||||| ||
Sbjct: 173 gaaggagatgcagccgctctcaaccgccgcatccaactgctggaggaggaactggaccgg 232
Query: 490 gctcaggaacgactggccacagccctgcagaagcttgaggaggcagaaaaggctgcagat 549
|||||||| | |||||||||||||||||||| || || |||||||| |||||||| |||
Sbjct: 233 gctcaggagcagctggccacagccctgcagaatctggaagaggcagagaaggctgctgat 292
Query: 550 gagagcgagagaggaatgaaggtgatagaaaaccgggccatgaaagatgaggagaagatg 609
||||| |||||||| |||||||| ||||| ||||| ||||||||||||||||| ||||||
Sbjct: 293 gagagtgagagaggcatgaaggtaatagagaaccgagccatgaaagatgaggaaaagatg 352
Query: 610 gagattcaggagatgcagctcaaagaggccaagcacattgccgaggaggccgaccgcaaa 669
||||| | |||||||||||||||||| ||||||||||| | || || |||||||||||
Sbjct: 353 gagatcctggagatgcagctcaaagaagccaagcacatcactgatgaagccgaccgcaag 412
Query: 670 tacgaggaggtagctcgtaagttggtcatcctggagggcgagctggagagggcagaggag 729
|| |||||||| |||||||||||||||||||||||||| |||||| | || |||||||||
Sbjct: 413 tatgaggaggttgctcgtaagttggtcatcctggagggtgagctgaaaagagcagaggag 472
Query: 730 cgtgccgaggtgtctgaactaaaatgtggtgacctggaagaagaactcaagaatgtcacc 789
|| || ||||| ||||||||||| |||||||||||||||||||| ||||||||||| ||
Sbjct: 473 cgggcggaggtatctgaactaaagtgtggtgacctggaagaagagctcaagaatgtaact 532
Query: 790 aacaacctgaagtcgctagaggctgcatctgaaaagtattctgaaaaggaggataaatat 849
||||| ||||| || || |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 533 aacaatctgaaatcactggaggctgcttctgaaaagtattctgaaaaggaggataaatat 592
Query: 850 gaagaagagattaaacttctgtctgacaaactgaaagaggctgagacccgtgctgaattt 909
|||||||| || || |||||||||||||| ||||| |||||||||||||| ||||| |||
Sbjct: 593 gaagaagaaatcaagcttctgtctgacaagctgaaggaggctgagacccgagctgagttt 652
Query: 910 gcagagagaacagttgcaaaactggaaaagaccatcgatgacctggaagaaaaacttgcc 969
||||| || |||||| | |||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 653 gcagaaaggacagtttctaaactggagaagacaatcgatgacctggaagaaaaacttgcc 712
Query: 970 caggccaaagaaaaggacgtgggcttacatcagacactggatcagacacttaacgaacta 1029
|||||||||||| || | ||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 713 caggccaaagaagagaatgtgggcttacatcagacactggaccagacactaaacgaactt 772
Query: 1030 aactgtatataaaccaaaacagaa 1053
|||||||||||||| ||| |||||
Sbjct: 773 aactgtatataaactaaaccagaa 796
>gnl|UG|Ssc#S18260562 BP157053 full-length enriched swine cDNA
library, adult spleen Sus scrofa cDNA clone SPL010009B03
5', mRNA sequence /clone=SPL010009B03 /clone_end=5'
/gb=BP157053 /gi=40406526 /ug=Ssc.20571 /len=893
Length = 893
Score = 287 bits (145), Expect = 6e-76
Identities = 436/533 (81%)
Strand = Plus / Plus
Query: 185 ccatggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaacgccatcg 244
||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 107 ccatggatgccatcaagaagaagatgcagatgctaaagctggacaaggagaatgccatcg 166
Query: 245 accgggccgagcaggcggagtcggataagaaagctgctgaggagaagtgcaagcaggtgg 304
|||| || |||||||||||| | || ||||| ||||| || ||||||||| |||
Sbjct: 167 accgtgctgagcaggcggaggctgacaagaagcaggctgaagaccgctgcaagcagctgg 226
Query: 305 aggaggagctgacgcacctccagaagaagctgaaggggacagaggatgagctggacaaat 364
||||||||| | | |||||||||||||||||| ||||| ||||||||| |||| || |
Sbjct: 227 aggaggagcagcaggccctccagaagaagctgaaagggacggaggatgaggtggaaaagt 286
Query: 365 actccgagaacctgaaggacgcgcaggaaaagctggagttgagcgagaagaaagcctccg 424
| ||||| ||||||| || ||||| || |||||| | || ||||| ||| |||
Sbjct: 287 attccgaatcagtgaaggatgcccaggagaaactggagcaggctgaaaagaaggccaccg 346
Query: 425 acgccgaaggggatgtagcagctctcaatcggcgcatccaactcgttgaggaggagttgg 484
||||||| | ||||| || | || || || ||||| || || || ||||||||| |||
Sbjct: 347 acgccgaggcagatgtggcctccctgaaccgccgcattcagctagtagaggaggagctgg 406
Query: 485 acagggctcaggaacgactggccacagccctgcagaagcttgaggaggcagaaaaggctg 544
|| |||| ||||| || ||||||||||||||||| ||||| |||||||| | ||||| |
Sbjct: 407 accgggcgcaggagcgtctggccacagccctgcaaaagctggaggaggccgggaaggcag 466
Query: 545 cagatgagagcgagagaggaatgaaggtgatagaaaaccgggccatgaaagatgaggaga 604
| |||||||| || |||||||||||||| || |||||||| |||||||| |||||||| |
Sbjct: 467 ctgatgagagtgaaagaggaatgaaggtcattgaaaaccgagccatgaaggatgaggaaa 526
Query: 605 agatggagattcaggagatgcagctcaaagaggccaagcacattgccgaggaggccgacc 664
|||||||| | |||||||||||||| || |||||||||||||| || ||||| | ||||
Sbjct: 527 agatggagctgcaggagatgcagctgaaggaggccaagcacatcgctgaggattcagacc 586
Query: 665 gcaaatacgaggaggtagctcgtaagttggtcatcctggagggcgagctggag 717
||||||| |||||||| || | ||| |||| |||||||| || |||||||||
Sbjct: 587 gcaaatatgaggaggtggccaggaagctggtgatcctggaaggagagctggag 639
Score = 60.0 bits (30), Expect = 2e-07
Identities = 99/122 (81%)
Strand = Plus / Plus
Query: 838 gaggataaatatgaagaagagattaaacttctgtctgacaaactgaaagaggctgagacc 897
||||||||||||||||| ||||| ||||| ||| || || || || ||||||||||||
Sbjct: 760 gaggataaatatgaagaggagatcaaactgctggaagagaagctaaaggaggctgagacc 819
Query: 898 cgtgctgaatttgcagagagaacagttgcaaaactggaaaagaccatcgatgacctggaa 957
|| || || ||||| || || | || ||||| |||| || ||||||||||||||||||
Sbjct: 820 cgagcagagtttgccgaaaggtcggtggcaaagttggagaaaaccatcgatgacctggaa 879
Query: 958 ga 959
||
Sbjct: 880 ga 881
>gnl|UG|Mm#S7114452 Mouse skeletal muscle beta tropomyosin mRNA,
complete cds. /cds=p(35,889) /gb=M81086 /gi=202162
/ug=Mm.646 /len=2097
Length = 2097
Score = 250 bits (126), Expect = 1e-64
Identities = 351/426 (82%)
Strand = Plus / Plus
Query: 292 tgcaagcaggtggaggaggagctgacgcacctccagaagaagctgaaggggacagaggat 351
||||||||| ||||||| |||| | | ||||||||||||||||||||||||||||||
Sbjct: 140 tgcaagcagctggaggaagagcagcaggccctccagaagaagctgaaggggacagaggac 199
Query: 352 gagctggacaaatactccgagaacctgaaggacgcgcaggaaaagctggagttgagcgag 411
||| |||| || || |||||| | ||||||| || ||||| || |||||| | |||
Sbjct: 200 gaggtggaaaagtattccgagtccgtgaaggatgcccaggagaaactggagcaggctgag 259
Query: 412 aagaaagcctccgacgccgaaggggatgtagcagctctcaatcggcgcatccaactcgtt 471
||||| ||| ||||||| |||| ||||| || |||| || || ||||| || |||||
Sbjct: 260 aagaaggccaccgacgctgaagcagatgtggcctctctgaaccgccgcattcagctcgta 319
Query: 472 gaggaggagttggacagggctcaggaacgactggccacagccctgcagaagcttgaggag 531
|||||||||||||| |||| ||||| || ||||| |||||| |||| ||||| ||||||
Sbjct: 320 gaggaggagttggatcgggcacaggagcgcctggctacagccttgcaaaagctggaggag 379
Query: 532 gcagaaaaggctgcagatgagagcgagagaggaatgaaggtgatagaaaaccgggccatg 591
|| || || || || |||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 380 gctgagaaagccgcggatgagagcgagagaggaatgaaggtcattgaaaaccgggccatg 439
Query: 592 aaagatgaggagaagatggagattcaggagatgcagctcaaagaggccaagcacattgcc 651
|| |||||||| ||||||||| | |||||||||||||| || || ||||||||||| ||
Sbjct: 440 aaggatgaggaaaagatggagctgcaggagatgcagctgaaggaagccaagcacatcgct 499
Query: 652 gaggaggccgaccgcaaatacgaggaggtagctcgtaagttggtcatcctggagggcgag 711
||||| | ||||||||||| |||||||| || | ||| |||| |||||||| || |||
Sbjct: 500 gaggactcagaccgcaaatatgaggaggtggccaggaagctggtgatcctggaaggggag 559
Query: 712 ctggag 717
||||||
Sbjct: 560 ctggag 565
Score = 117 bits (59), Expect = 1e-24
Identities = 74/79 (93%)
Strand = Plus / Plus
Query: 182 cagccatggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaacgcca 241
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 30 cagccatggacgccatcaagaagaagatgcagatgctgaaactggacaaggagaatgcca 89
Query: 242 tcgaccgggccgagcaggc 260
||||||| || ||||||||
Sbjct: 90 tcgaccgcgcggagcaggc 108
Score = 67.9 bits (34), Expect = 1e-09
Identities = 100/122 (81%)
Strand = Plus / Plus
Query: 838 gaggataaatatgaagaagagattaaacttctgtctgacaaactgaaagaggctgagacc 897
||||| ||||| ||||||||||| ||||||||| || || ||||||||||||||||||
Sbjct: 686 gaggacaaatacgaagaagagatcaaacttctggaggagaagctgaaagaggctgagacc 745
Query: 898 cgtgctgaatttgcagagagaacagttgcaaaactggaaaagaccatcgatgacctggaa 957
|| || || ||||| || ||| | || ||||| |||| || ||||| ||||| ||||||
Sbjct: 746 cgagcagagtttgctgaaagatctgtggcaaagttggagaaaaccattgatgatctggaa 805
Query: 958 ga 959
||
Sbjct: 806 ga 807
>gnl|UG|Mm#S9085693 Mus musculus 18-day embryo whole body cDNA,
RIKEN full-length enriched library, clone:1100001I18
product:tropomyosin 2, beta, full insert sequence
/cds=p(83,937) /gb=AK003175 /gi=12833676 /ug=Mm.121878
/len=1703
Length = 1703
Score = 240 bits (121), Expect = 1e-61
Identities = 424/525 (80%)
Strand = Plus / Plus
Query: 457 cgcatccaactcgttgaggaggagttggacagggctcaggaacgactggccacagccctg 516
|||||||| || ||||||||||||||||| | |||||||| || ||||||||||| |||
Sbjct: 353 cgcatccagctggttgaggaggagttggatcgtgctcaggagcgtctggccacagctctg 412
Query: 517 cagaagcttgaggaggcagaaaaggctgcagatgagagcgagagaggaatgaaggtgata 576
|||||||| |||||||| || ||||||||||||||||| |||||||| ||||| || ||
Sbjct: 413 cagaagctggaggaggccgagaaggctgcagatgagagtgagagaggcatgaaagtcatt 472
Query: 577 gaaaaccgggccatgaaagatgaggagaagatggagattcaggagatgcagctcaaagag 636
|||| ||| ||| |||||||| || |||||||||||||||||||| ||||| ||||||
Sbjct: 473 gaaagccgagcccaaaaagatgaagaaaagatggagattcaggagatccagctgaaagag 532
Query: 637 gccaagcacattgccgaggaggccgaccgcaaatacgaggaggtagctcgtaagttggtc 696
|||||||||||||| || || || ||||| || || || ||||| || |||||| |||||
Sbjct: 533 gccaagcacattgctgaagatgctgaccggaagtatgaagaggtggcccgtaagctggtc 592
Query: 697 atcctggagggcgagctggagagggcagaggagcgtgccgaggtgtctgaactaaaatgt 756
||| | ||| |||| ||||| | ||||||||||| || ||| | || ||| ||||||
Sbjct: 593 atcatcgagagcgacctggaacgtgcagaggagcgggctgagctctcagaaggcaaatgt 652
Query: 757 ggtgacctggaagaagaactcaagaatgtcaccaacaacctgaagtcgctagaggctgca 816
| || || ||||||||| | || | || || |||||| ||||||| || ||||||
Sbjct: 653 gccgagcttgaagaagaattgaaaacggtgacgaacaacttgaagtcactggaggctcag 712
Query: 817 tctgaaaagtattctgaaaaggaggataaatatgaagaagagattaaacttctgtctgac 876
|||| ||||| ||| | ||||| || ||||||||||| ||||| || |||| ||||||
Sbjct: 713 gctgagaagtactctcagaaggaagacaaatatgaagaggagatcaaggttctctctgac 772
Query: 877 aaactgaaagaggctgagacccgtgctgaatttgcagagagaacagttgcaaaactggaa 936
|| ||||| |||||||| || || ||||| |||||||||||| |||| | ||| ||||
Sbjct: 773 aagctgaaggaggctgaaactcgggctgagtttgcagagagatcagtaaccaaattggag 832
Query: 937 aagaccatcgatgacctggaagaaaaacttgcccaggccaaagaa 981
|| | ||| |||||| | ||||| ||| | ||||| |||||||||
Sbjct: 833 aaaagcattgatgacttagaagagaaagtggcccatgccaaagaa 877
Score = 95.6 bits (48), Expect = 4e-18
Identities = 153/188 (81%)
Strand = Plus / Plus
Query: 185 ccatggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaacgccatcg 244
||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||| | |
Sbjct: 81 ccatggacgccatcaagaagaagatgcagatgctgaagctcgacaaagagaacgccttgg 140
Query: 245 accgggccgagcaggcggagtcggataagaaagctgctgaggagaagtgcaagcaggtgg 304
| || || ||||| |||||| | |||||||| || || || || | |||||||| |||
Sbjct: 141 atcgagctgagcaagcggaggctgataagaaggcggcggaagaccggagcaagcagctgg 200
Query: 305 aggaggagctgacgcacctccagaagaagctgaaggggacagaggatgagctggacaaat 364
| || |||||| | || || ||||| || ||||| || || ||||| ||||||||||
Sbjct: 201 aagatgagctggtgtcactgcaaaagaaactcaagggcactgaagatgaactggacaaat 260
Query: 365 actccgag 372
||||||||
Sbjct: 261 actccgag 268
>gnl|UG|Ssc#S6089598 Z98799 pT7T318U Sus scrofa domestica cDNA clone
pAZ3A08 similar to alpha tropomyosin, mRNA sequence
/clone=pAZ3A08 /gb=Z98799 /gi=5706072 /ug=Ssc.13956
/len=1054
Length = 1054
Score = 236 bits (119), Expect = 2e-60
Identities = 410/507 (80%)
Strand = Plus / Plus
Query: 193 gccatcaagaagaagatgcagatgctgaagctggacaaggagaacgccatcgaccgggcc 252
|||||||||||||||||||| ||||| ||||| ||||||||||||||| | || || ||
Sbjct: 3 gccatcaagaagaagatgcaaatgctcaagctcgacaaggagaacgccttggatcgagcg 62
Query: 253 gagcaggcggagtcggataagaaagctgctgaggagaagtgcaagcaggtggaggaggag 312
|||||||||||| | |||||||| || || ||||| | | |||||||| |||| || |||
Sbjct: 63 gagcaggcggaggccgataagaaggcggcagaggacaggagcaagcagctggaagatgag 122
Query: 313 ctgacgcacctccagaagaagctgaaggggacagaggatgagctggacaaatactccgag 372
||| | || || |||||||| |||| || || ||||| ||||||||||| ||||||
Sbjct: 123 ctggtgtcgctgcaaaagaagctcaaggccaccgaagatgaactggacaaatattccgag 182
Query: 373 aacctgaaggacgcgcaggaaaagctggagttgagcgagaagaaagcctccgacgccgaa 432
|| || || || ||||| ||||||||| || ||||| || ||| |||| || |||
Sbjct: 183 gctctcaaagatgcccaggagaagctggagctggcggagaaaaaggccaccgatgctgaa 242
Query: 433 ggggatgtagcagctctcaatcggcgcatccaactcgttgaggaggagttggacagggct 492
| |||||||| |||| || | ||||||||||| |||||||| ||| ||||| | ||
Sbjct: 243 gccgatgtagcttctctgaacagacgcatccaactggttgaggaagagctggaccgtgcc 302
Query: 493 caggaacgactggccacagccctgcagaagcttgaggaggcagaaaaggctgcagatgag 552
||||| |||||||| ||||| | ||||| ||||||||||| || ||||| |||||||||
Sbjct: 303 caggagcgactggcaacagctttacagaaacttgaggaggctgagaaggcagcagatgag 362
Query: 553 agcgagagaggaatgaaggtgatagaaaaccgggccatgaaagatgaggagaagatggag 612
|| |||||||| ||||| || || |||| ||| ||| || ||||||||||| |||||
Sbjct: 363 agtgagagaggcatgaaagtcattgaaagccgagcccaaaaggatgaggagaaaatggaa 422
Query: 613 attcaggagatgcagctcaaagaggccaagcacattgccgaggaggccgaccgcaaatac 672
||||||||||| ||||| ||||| |||||||||||||| ||||| ||||||||||| ||
Sbjct: 423 attcaggagatccagctgaaagaagccaagcacattgctgaggatgccgaccgcaagtat 482
Query: 673 gaggaggtagctcgtaagttggtcatc 699
|| ||||| || |||||| ||||||||
Sbjct: 483 gaagaggtggcccgtaagctggtcatc 509
Score = 54.0 bits (27), Expect = 1e-05
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 835 aaggaggataaatatgaagaagagattaaacttctgtctgacaaactgaaagaggctgag 894
||||| || ||||||||||||||||| || | || |||||||| ||||| ||||||||
Sbjct: 645 aaggaagacaaatatgaagaagagatcaaggtcctttctgacaagctgaaggaggctgaa 704
Query: 895 acccgtgctgaatttgcagagag 917
|| || || || |||||||||||
Sbjct: 705 actcgggccgagtttgcagagag 727
>gnl|UG|Hs#S21311480 full-length cDNA clone CS0DK002YI10 of HeLa
cells Cot 25-normalized of Homo sapiens (human)
/gb=CR590682 /gi=50471489 /ug=Hs.300772 /len=1735
Length = 1735
Score = 224 bits (113), Expect = 7e-57
Identities = 215/249 (86%)
Strand = Plus / Plus
Query: 469 gttgaggaggagttggacagggctcaggaacgactggccacagccctgcagaagcttgag 528
|||||||||||| ||||| |||| ||||| || ||||| ||||||||||||||||| |||
Sbjct: 377 gttgaggaggagctggaccgggcccaggagcgcctggctacagccctgcagaagctggag 436
Query: 529 gaggcagaaaaggctgcagatgagagcgagagaggaatgaaggtgatagaaaaccgggcc 588
||||| || ||||| || |||||||||||||||||||||||||| || ||||||||||||
Sbjct: 437 gaggccgagaaggcggctgatgagagcgagagaggaatgaaggtcatcgaaaaccgggcc 496
Query: 589 atgaaagatgaggagaagatggagattcaggagatgcagctcaaagaggccaagcacatt 648
||||| ||||||||||||||||| | |||||||||||||| || ||||||||||||||
Sbjct: 497 atgaaggatgaggagaagatggaactgcaggagatgcagctgaaggaggccaagcacatc 556
Query: 649 gccgaggaggccgaccgcaaatacgaggaggtagctcgtaagttggtcatcctggagggc 708
|| ||||| | ||||||||||| || ||||| || | ||| |||| |||||||| ||
Sbjct: 557 gctgaggattcagaccgcaaatatgaagaggtggccaggaagctggtgatcctggaagga 616
Query: 709 gagctggag 717
|||||||||
Sbjct: 617 gagctggag 625
Score = 178 bits (90), Expect = 4e-43
Identities = 156/178 (87%)
Strand = Plus / Plus
Query: 182 cagccatggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaacgcca 241
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90 cagccatggacgccatcaagaagaagatgcagatgctgaagctggacaaggagaacgcca 149
Query: 242 tcgaccgggccgagcaggcggagtcggataagaaagctgctgaggagaagtgcaagcagg 301
||||||| ||||||||||| || | || ||||| |||||||| |||||||||
Sbjct: 150 tcgaccgcgccgagcaggccgaagccgacaagaagcaagctgaggaccgctgcaagcagc 209
Query: 302 tggaggaggagctgacgcacctccagaagaagctgaaggggacagaggatgagctgga 359
|||||||||||| | | |||||||||||||||||||||||||||||||||| ||||
Sbjct: 210 tggaggaggagcagcaggccctccagaagaagctgaaggggacagaggatgaggtgga 267
Score = 54.0 bits (27), Expect = 1e-05
Identities = 96/119 (80%)
Strand = Plus / Plus
Query: 841 gataaatatgaagaagagattaaacttctgtctgacaaactgaaagaggctgagacccgt 900
|||||||||||||| ||||| ||||| || || || ||||| ||||||||||||||
Sbjct: 749 gataaatatgaagaggagatcaaactgttggaggagaagctgaaggaggctgagacccga 808
Query: 901 gctgaatttgcagagagaacagttgcaaaactggaaaagaccatcgatgacctggaaga 959
|| || ||||| ||||| | || ||||| |||| || |||||||||||||| |||||
Sbjct: 809 gcagagtttgccgagaggtctgtggcaaagttggagaaaaccatcgatgacctagaaga 867
>gnl|UG|Bt#S11975653 6664 MARC BSM Bos taurus cDNA 5', mRNA sequence
/clone_end=5' /gb=BF430381 /gi=11442478 /ti=480294234
/ug=Bt.12477 /len=1027
Length = 1027
Score = 208 bits (105), Expect = 4e-52
Identities = 183/209 (87%)
Strand = Plus / Plus
Query: 472 gaggaggagttggacagggctcaggaacgactggccacagccctgcagaagcttgaggag 531
||||||||| ||||| |||| ||||| || ||||| ||||||||||||||||| ||||||
Sbjct: 302 gaggaggagctggaccgggcacaggagcgtctggctacagccctgcagaagctggaggag 361
Query: 532 gcagaaaaggctgcagatgagagcgagagaggaatgaaggtgatagaaaaccgggccatg 591
|| || ||||| || |||||||||||||||||||||||||| || |||||||| || |||
Sbjct: 362 gctgagaaggcagctgatgagagcgagagaggaatgaaggtcatcgaaaaccgagctatg 421
Query: 592 aaagatgaggagaagatggagattcaggagatgcagctcaaagaggccaagcacattgcc 651
|| |||||||| ||||||||| | |||||||||||||| || |||||||||||||| |||
Sbjct: 422 aaggatgaggaaaagatggagctgcaggagatgcagctgaaggaggccaagcacatcgcc 481
Query: 652 gaggaggccgaccgcaaatacgaggaggt 680
||||| | ||||||||||| ||||||||
Sbjct: 482 gaggattcggaccgcaaatatgaggaggt 510
>gnl|UG|Hs#S3989649 Homo sapiens cDNA FLJ32003 fis, clone NT2RP7009397
/gb=AK056565 /gi=16552003 /ug=Hs.466088 /len=3108
Length = 3108
Score = 155 bits (78), Expect = 5e-36
Identities = 117/130 (90%)
Strand = Plus / Minus
Query: 298 caggtggaggaggagctgacgcacctccagaagaagctgaaggggacagaggatgagctg 357
||||||||||||||||||||||||||||||||||| || || ||||||||||| ||||||
Sbjct: 1353 caggtggaggaggagctgacgcacctccagaagaaactaaaagggacagaggacgagctg 1294
Query: 358 gacaaatactccgagaacctgaaggacgcgcaggaaaagctggagttgagcgagaagaaa 417
|| ||||| |||||| ||||||||||||||||||| ||||||||| | | ||||||||
Sbjct: 1293 gataaatattccgaggacctgaaggacgcgcaggagaagctggagctcacggagaagaag 1234
Query: 418 gcctccgacg 427
||||||||||
Sbjct: 1233 gcctccgacg 1224
>gnl|UG|Bt#S22877747 Bos taurus TPM3 mRNA for tropomyosin 3,
complete cds /cds=p(54,908) /gb=AB198072 /gi=57281700
/ug=Bt.9448 /len=1106
Length = 1106
Score = 151 bits (76), Expect = 8e-35
Identities = 394/500 (78%)
Strand = Plus / Plus
Query: 460 atccaactcgttgaggaggagttggacagggctcaggaacgactggccacagccctgcag 519
||||| || ||||| |||||| ||||| | ||||| || || |||||||| ||||||||
Sbjct: 327 atccagctggttgaagaggagctggaccgagctcaagagcgcctggccactgccctgcaa 386
Query: 520 aagcttgaggaggcagaaaaggctgcagatgagagcgagagaggaatgaaggtgatagaa 579
||||| ||||| || || || ||||| |||||||| |||||||| |||||||| || |||
Sbjct: 387 aagctggaggaagctgagaaagctgctgatgagagtgagagaggtatgaaggttattgaa 446
Query: 580 aaccgggccatgaaagatgaggagaagatggagattcaggagatgcagctcaaagaggcc 639
||||| ||| | |||||||| || || ||||| | ||||| || || |||||||| ||
Sbjct: 447 aaccgagccttaaaagatgaagaaaaaatggaactccaggaaatccaactcaaagaagct 506
Query: 640 aagcacattgccgaggaggccgaccgcaaatacgaggaggtagctcgtaagttggtcatc 699
||||||||||| || ||||| ||| | || || || ||||| ||||| |||||||| ||
Sbjct: 507 aagcacattgcagaagaggcagacaggaagtatgaagaggtggctcgcaagttggtgatt 566
Query: 700 ctggagggcgagctggagagggcagaggagcgtgccgaggtgtctgaactaaaatgtggt 759
| ||||| || ||||| | |||||||||| |||||| || | || |||||| |
Sbjct: 567 attgagggagacttggagcgcacagaggagcgagccgagctggcagagtctaaatgttct 626
Query: 760 gacctggaagaagaactcaagaatgtcaccaacaacctgaagtcgctagaggctgcatct 819
|| ||||| || || || |||||||||||||||||||| ||||| || |||||| |
Sbjct: 627 gagctggaggaggagctgaagaatgtcaccaacaacctcaagtctcttgaggctcaggcg 686
Query: 820 gaaaagtattctgaaaaggaggataaatatgaagaagagattaaacttctgtctgacaaa 879
|| ||||| ||| |||| || || |||||||| |||||||| || |||| | || |||
Sbjct: 687 gagaagtactctcaaaaagaagacaaatatgaggaagagataaagattcttaccgataaa 746
Query: 880 ctgaaagaggctgagacccgtgctgaatttgcagagagaacagttgcaaaactggaaaag 939
|| || ||||| |||||||||||||| ||||| |||||| | || || || |||||||||
Sbjct: 747 ctcaaggaggcagagacccgtgctgagtttgctgagagatcggtagccaagctggaaaag 806
Query: 940 accatcgatgacctggaaga 959
|| || ||||| |||||||
Sbjct: 807 acaattgatgatttggaaga 826
Score = 97.6 bits (49), Expect = 1e-18
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 187 atggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaacgc 239
||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 54 atggaggccatcaagaaaaagatgcagatgctgaagctggacaaggagaacgc 106
Score = 60.0 bits (30), Expect = 2e-07
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 325 cagaagaagctgaaggggacagaggatgagctggacaa 362
|||||||||||||| ||||||||||| |||||||||||
Sbjct: 192 cagaagaagctgaaagggacagaggacgagctggacaa 229
Database: UniGene(Bt+Hs+Ssc+Mm)
Posted date: Mar 18, 2005 8:01 PM
Number of letters in database: 222,131,506
Number of sequences in database: 151,043
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 1237
length of database: 222,131,506
effective HSP length: 19
effective length of query: 1218
effective length of database: 219,261,689
effective search space: 267060737202
effective search space used: 267060737202
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)