>20050322C-005293 (20050322C-005293) 20050322C-005293 AGGCAGAAGA AGACAGACAG GCCAACAGGT TCAGACAGCC TGCTCGCCGC TCCACGCCCC CCACTGCTCT CCTGCCCCAG CGCCGAGATG GATACCCCTG TTAGGGACCT AGACAAGTTC ATCGAAGACC ACCTCCTGCC AAACACATGT TTCCGAACGC AGGTCAAGGA AGCCATCGAC ATCGTCTGCG GTTTCCTGAA GGAGAGGTGC TTCCAGGGGA CCGCCGACCC TGTTCGCGTC TCCAAAGTTG TGAAGGGTGG CTCCTCGGGC AAAGGCACGA CCCTCAGGGG CCGATCAGAT GCTGACCTCG TCGTCTTCCT CACCAAGCTC ACAAGTTTTG AGGATCAGCT TCAGCTCCGA GAAGAATTCA TCCAGGAAAT TCGGAGACAG CTGGAAGCCT GTCAAAAAGA ACAAAAGTTT AAAGTGACGT TTGAGGTCCA GACTCCACGA CAGGAGAACC CCCGTGCCCT CAGCTTCGTG CTCAGCTCCC CCCAGCTCCA GCAGGAGGTG GAGTTTGATG TCCTGCCCGC CTTTGATGCC CTGGGTCAGT GGACCCCGGG CTACAAACCC AACCCGGAAA TCTACGTCCA GCTTATCAAA GAGTGCAAGT CCCTAGGGAA AGAGGGCGAG TTTTCCACCT GCTTCACGGA GCTGCAGCGA GACTTCCTGA GGAACCGACC AACCAAGCTG AAGAGCCTCA TCCGCCTTGT CAAGCACTGG TACCAGACGT GTAAGAAGCC TCATGGAAAT AAACTGCCCC CACAGTATGC CCTGGAGCTC CTGACAGTCT ATGCATGGGA GCAAGGAAGC GGGAAAACAG ATTTTAGCAC AGCTCAGGGA TTTCAGACTG TTTTGGAATT AGTCCTAAAG CATAAGAAGC TTTGCATCTT CTGGGAAGCA TATTATAACT TTAAAAACCC TGTCGTTGGA CGATATCTGA CTGAGCAACT CAAGAAACCC AGGCCTGTGA TTCTGGACCC GGC
Query= 20050322C-005293 (20050322C-005293) 20050322C-005293
(983 letters)
Database: UniGene(Bt+Hs+Ssc+Mm)
151,043 sequences; 222,131,506 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gnl|UG|Ssc#S22606868 Sus scrofa 2'-5' oligoadenylate synthetase ... 1925 0.0
Alignment gnl|UG|Bt#S22606239 Bos taurus 2'-5'-oligoadenylate synthetase 1... 547 e-154
Alignment gnl|UG|Bt#S14911601 Bos taurus OAS1 mRNA for 2'-5'-oligoadenylat... 519 e-146
Alignment gnl|UG|Bt#S18949718 961130 MARC 2BOV Bos taurus cDNA 3', mRNA se... 141 6e-32
Alignment gnl|UG|Bt#S14866661 702461 MARC 6BOV Bos taurus cDNA 3', mRNA se... 133 2e-29
Alignment gnl|UG|Mm#S9731636 Mus musculus 2'-5'olygoadenylate synthetase 1... 125 4e-27
Alignment gnl|UG|Hs#S16889176 Homo sapiens cDNA FLJ41534 fis, clone BRTHA2... 103 1e-20
Alignment gnl|UG|Mm#S9306381 Mus musculus 2'-5' oligoadenylate synthetase ... 72 5e-11
Alignment gnl|UG|Mm#S10848007 Mus musculus 10 days neonate skin cDNA, RIKE... 62 5e-08
Alignment gnl|UG|Hs#S3217380 Homo sapiens P/OKcl.4 mRNA for 2'-5' oligoade... 58 7e-07
>gnl|UG|Ssc#S22606868 Sus scrofa 2'-5' oligoadenylate synthetase 1
(Oas1) mRNA, complete cds /cds=p(84,1151) /gb=AY550259
/gi=47524463 /ug=Ssc.1031 /len=1501
Length = 1501
Score = 1925 bits (971), Expect = 0.0
Identities = 977/979 (99%)
Strand = Plus / Plus
Query: 5 agaagaagacagacaggccaacaggttcagacagcctgctcgccgctccacgccccccac 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agaagaagacagacaggccaacaggttcagacagcctgctcgccgctccacgccccccac 60
Query: 65 tgctctcctgccccagcgccgagatggatacccctgttagggacctagacaagttcatcg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgctctcctgccccagcgccgagatggatacccctgttagggacctagacaagttcatcg 120
Query: 125 aagaccacctcctgccaaacacatgtttccgaacgcaggtcaaggaagccatcgacatcg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aagaccacctcctgccaaacacatgtttccgaacgcaggtcaaggaagccatcgacatcg 180
Query: 185 tctgcggtttcctgaaggagaggtgcttccaggggaccgccgaccctgttcgcgtctcca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tctgcggtttcctgaaggagaggtgcttccaggggaccgccgaccctgttcgcgtctcca 240
Query: 245 aagttgtgaagggtggctcctcgggcaaaggcacgaccctcaggggccgatcagatgctg 304
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 241 aagttgtgaagggtggctcctcgggcaagggcacgaccctcaggggccgatcagatgctg 300
Query: 305 acctcgtcgtcttcctcaccaagctcacaagttttgaggatcagcttcagctccgagaag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 acctcgtcgtcttcctcaccaagctcacaagttttgaggatcagcttcagctccgagaag 360
Query: 365 aattcatccaggaaattcggagacagctggaagcctgtcaaaaagaacaaaagtttaaag 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aattcatccaggaaattcggagacagctggaagcctgtcaaaaagaacaaaagtttaaag 420
Query: 425 tgacgtttgaggtccagactccacgacaggagaacccccgtgccctcagcttcgtgctca 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tgacgtttgaggtccagactccacgacaggagaacccccgtgccctcagcttcgtgctca 480
Query: 485 gctccccccagctccagcaggaggtggagtttgatgtcctgcccgcctttgatgccctgg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gctccccccagctccagcaggaggtggagtttgatgtcctgcccgcctttgatgccctgg 540
Query: 545 gtcagtggaccccgggctacaaacccaacccggaaatctacgtccagcttatcaaagagt 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gtcagtggaccccgggctacaaacccaacccggaaatctacgtccagcttatcaaagagt 600
Query: 605 gcaagtccctagggaaagagggcgagttttccacctgcttcacggagctgcagcgagact 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gcaagtccctagggaaagagggcgagttttccacctgcttcacggagctgcagcgagact 660
Query: 665 tcctgaggaaccgaccaaccaagctgaagagcctcatccgccttgtcaagcactggtacc 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tcctgaggaaccgaccaaccaagctgaagagcctcatccgccttgtcaagcactggtacc 720
Query: 725 agacgtgtaagaagcctcatggaaataaactgcccccacagtatgccctggagctcctga 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 agacgtgtaagaagcctcatggaaataaactgcccccacagtatgccctggagctcctga 780
Query: 785 cagtctatgcatgggagcaaggaagcgggaaaacagattttagcacagctcagggatttc 844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 cagtctatgcatgggagcaaggaagcgggaaaacagattttagcacagctcagggatttc 840
Query: 845 agactgttttggaattagtcctaaagcataagaagctttgcatcttctgggaagcatatt 904
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 agactgttttggagttagtcctaaagcataagaagctttgcatcttctgggaagcatatt 900
Query: 905 ataactttaaaaaccctgtcgttggacgatatctgactgagcaactcaagaaacccaggc 964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 ataactttaaaaaccctgtcgttggacgatatctgactgagcaactcaagaaacccaggc 960
Query: 965 ctgtgattctggacccggc 983
|||||||||||||||||||
Sbjct: 961 ctgtgattctggacccggc 979
>gnl|UG|Bt#S22606239 Bos taurus 2'-5'-oligoadenylate synthetase 1
(OAS1) mRNA, complete cds /cds=p(63,1232) /gb=AY243505
/gi=37953331 /ug=Bt.20891 /len=1682
Length = 1682
Score = 547 bits (276), Expect = e-154
Identities = 633/752 (84%)
Strand = Plus / Plus
Query: 232 gttcgcgtctccaaagttgtgaagggtggctcctcgggcaaaggcacgaccctcaggggc 291
||||| || ||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 216 gttcgggtgtccaaagttgtgaagggcggctcctcaggcaaaggcacgaccctcagggga 275
Query: 292 cgatcagatgctgacctcgtcgtcttcctcaccaagctcacaagttttgaggatcagctt 351
||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||
Sbjct: 276 cgatcagatgctgacctcgtcgtcttcctcaccaatctcacaagttttcaggaacagctt 335
Query: 352 cagctccgagaagaattcatccaggaaattcggagacagctggaagcctgtcaaaaagaa 411
||| ||||| |||||||||| | ||||| |||||||||||||||||||||||| |||
Sbjct: 336 gagcgccgaggagaattcatcgaagaaatcaggagacagctggaagcctgtcaaagagag 395
Query: 412 caaaagtttaaagtgacgtttgaggtccagactccacgacaggagaacccccgtgccctc 471
||| ||| |||||| |||||||||||||| | | | |||||| ||||| || |||
Sbjct: 396 gaaacatttgaagtgaagtttgaggtccagaaacggcaatgggagaatccccgcgctctc 455
Query: 472 agcttcgtgctcagctccccccagctccagcaggaggtggagtttgatgtcctgcccgcc 531
||||| ||||| || |||||| ||||| | |||| ||||||||| |||||||||||||||
Sbjct: 456 agctttgtgctgaggtcccccaagctcaaccaggcggtggagttcgatgtcctgcccgcc 515
Query: 532 tttgatgccctgggtcagtggaccccgggctacaaacccaacccggaaatctacgtccag 591
||||||||||| ||||||| |||| || |||| ||| || | | |||| |||| |
Sbjct: 516 tttgatgccctaggtcagttgaccaaaggttacagacctgactctagagtctatgtccgg 575
Query: 592 cttatcaaagagtgcaagtccctagggaaagagggcgagttttccacctgcttcacggag 651
|| ||| |||||||||||| ||| || ||| |||||||| ||| ||||||||||||||
Sbjct: 576 ctcatccaagagtgcaagtacctgaagagagaaggcgagttctccccctgcttcacggag 635
Query: 652 ctgcagcgagacttcctgaggaaccgaccaaccaagctgaagagcctcatccgccttgtc 711
||||||||||||||||||| ||| || ||||||||||||||||||||||||||||| ||
Sbjct: 636 ctgcagcgagacttcctgaagaatcgtccaaccaagctgaagagcctcatccgcctggtg 695
Query: 712 aagcactggtaccagacgtgtaagaagcctcatggaaataaactgcccccacagtatgcc 771
|||||||||||||| ||||||| ||| | |||||| | |||||||||| |||||
Sbjct: 696 aagcactggtaccaactgtgtaaggagcagcttggaaagccattgcccccacaatatgct 755
Query: 772 ctggagctcctgacagtctatgcatgggagcaaggaagcgggaaaacagattttagcaca 831
|||||||| ||||| |||||||| |||||||||||| || ||||||| || | ||||
Sbjct: 756 ctggagcttctgacggtctatgcctgggagcaaggatgcaataaaacaggattcatcaca 815
Query: 832 gctcagggatttcagactgttttggaattagtcctaaagcataagaagctttgcatcttc 891
|||||||||||||||||||| ||| |||||||||||||| || ||||||||||||||| |
Sbjct: 816 gctcagggatttcagactgtcttgaaattagtcctaaagtatcagaagctttgcatctac 875
Query: 892 tgggaagcatattataactttaaaaaccctgtcgttggacgatatctgactgagcaactc 951
|||||| | ||||||| | |||||||| | ||| | ||||||||| |||||||
Sbjct: 876 tgggaaaagaactataactctgaaaaccctattattgaagaatatctgacgaagcaactt 935
Query: 952 aagaaacccaggcctgtgattctggacccggc 983
|||||||||||||||||||||||||||||
Sbjct: 936 gcaaaacccaggcctgtgattctggacccggc 967
Score = 99.6 bits (50), Expect = 2e-19
Identities = 92/106 (86%)
Strand = Plus / Plus
Query: 109 ctagacaagttcatcgaagaccacctcctgccaaacacatgtttccgaacgcaggtcaag 168
||||||||||||||||||||||||||||||||| || ||||| | |||||||||
Sbjct: 93 ctagacaagttcatcgaagaccacctcctgccagacgaggagttccgcatgcaggtcaaa 152
Query: 169 gaagccatcgacatcgtctgcggtttcctgaaggagaggtgcttcc 214
||||||||||||||| ||||| |||||||||||||||||| ||||
Sbjct: 153 gaagccatcgacatcatctgcactttcctgaaggagaggtgtttcc 198
>gnl|UG|Bt#S14911601 Bos taurus OAS1 mRNA for 2'-5'-oligoadenylate
synthetase, complete cds /cds=p(40,1098) /gb=AB104656
/gi=29292939 /ug=Bt.20922 /len=1244
Length = 1244
Score = 519 bits (262), Expect = e-146
Identities = 556/654 (85%)
Strand = Plus / Plus
Query: 241 tccaaagttgtgaagggtggctcctcgggcaaaggcacgaccctcaggggccgatcagat 300
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 199 tccaaagttgtgaagggtggctcctcaggcaaaggcacgaccctcaggggacgatcagat 258
Query: 301 gctgacctcgtcgtcttcctcaccaagctcacaagttttgaggatcagcttcagctccga 360
|||||||||||||||||||||||||| |||||||||||| ||| |||||| ||| ||||
Sbjct: 259 gctgacctcgtcgtcttcctcaccaatctcacaagttttcgggaacagcttgagcgccga 318
Query: 361 gaagaattcatccaggaaattcggagacagctggaagcctgtcaaaaagaacaaaagttt 420
| |||||||||| | ||||| |||||||||||||||||||||||| ||| ||| |||
Sbjct: 319 ggagaattcatcgaagaaatcaggagacagctggaagcctgtcaaagagagaaaacattt 378
Query: 421 aaagtgacgtttgaggtccagactccacgacaggagaacccccgtgccctcagcttcgtg 480
|||||| || ||||||||||| | | | |||||| ||||| || |||||||| |||
Sbjct: 379 gaagtgaagtctgaggtccagaaacggcaatgggagaatccccgcgctctcagctttgtg 438
Query: 481 ctcagctccccccagctccagcaggaggtggagtttgatgtcctgcccgcctttgatgcc 540
|| || |||||| ||||| | |||||||||||||| ||||||||||||||||||||||||
Sbjct: 439 ctgaggtcccccaagctcgaccaggaggtggagttcgatgtcctgcccgcctttgatgcc 498
Query: 541 ctgggtcagtggaccccgggctacaaacccaacccggaaatctacgtccagcttatcaaa 600
|||||||||| |||| || |||| ||| |||| |||||||||| |||| ||| ||
Sbjct: 499 ctgggtcagttgaccaaaggttacagacctgaccctcaaatctacgtgaagctcatccaa 558
Query: 601 gagtgcaagtccctagggaaagagggcgagttttccacctgcttcacggagctgcagcga 660
|||||| || || ||| |||||||||||| ||| |||||||||||||||||||||||
Sbjct: 559 gagtgcgagaaccagaggagagagggcgagttctccccctgcttcacggagctgcagcga 618
Query: 661 gacttcctgaggaaccgaccaaccaagctgaagagcctcatccgccttgtcaagcactgg 720
|||||||||| | | || || ||||||||||||||||||||||||| || |||||||||
Sbjct: 619 gacttcctgaaggagcgtccggccaagctgaagagcctcatccgcctggtgaagcactgg 678
Query: 721 taccagacgtgtaagaagcctcatggaaataaactgcccccacagtatgccctggagctc 780
||||| |||||||| | ||| ||||| ||||||||||||||||||||||||||
Sbjct: 679 taccaactgtgtaagatgaagcataagaataacctgcccccacagtatgccctggagctg 738
Query: 781 ctgacagtctatgcatgggagcaaggaagcgggaaaacagattttagcacagctcaggga 840
||||| |||||||| ||||| |||||||||| ||| |||| || |||||||||||||||
Sbjct: 739 ctgaccgtctatgcctgggaacaaggaagcgcaaaaccagaattcagcacagctcaggga 798
Query: 841 tttcagactgttttggaattagtcctaaagcataagaagctttgcatcttctgg 894
|||| |||||||||||| ||| |||| |||||| || | || ||||||| ||||
Sbjct: 799 tttcggactgttttggagttaatcctgaagcatcaggacctctgcatctactgg 852
Score = 75.8 bits (38), Expect = 3e-12
Identities = 89/106 (83%)
Strand = Plus / Plus
Query: 109 ctagacaagttcatcgaagaccacctcctgccaaacacatgtttccgaacgcaggtcaag 168
|||||||||||||||||||||||||| ||| ||||| ||||| || || |||||
Sbjct: 73 ctagacaagttcatcgaagaccaccttctgtcaaacgaggagttccgcacccaagtcaaa 132
Query: 169 gaagccatcgacatcgtctgcggtttcctgaaggagaggtgcttcc 214
|||||||||||||| ||||| |||||||||||||||||| ||||
Sbjct: 133 caagccatcgacatcatctgcactttcctgaaggagaggtgtttcc 178
Score = 58.0 bits (29), Expect = 7e-07
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 955 aaacccaggcctgtgattctggacccggc 983
|||||||||||||||||||||||||||||
Sbjct: 913 aaacccaggcctgtgattctggacccggc 941
>gnl|UG|Bt#S18949718 961130 MARC 2BOV Bos taurus cDNA 3', mRNA
sequence /clone_end=3' /gb=CK772576 /gi=42726719
/ti=432656383 /ug=Bt.32525 /len=896
Length = 896
Score = 141 bits (71), Expect = 6e-32
Identities = 197/239 (82%)
Strand = Plus / Minus
Query: 683 ccaagctgaagagcctcatccgccttgtcaagcactggtaccagacgtgtaagaagcctc 742
||||||||||||||||||||||||| || |||||||||||||| |||||||||| |
Sbjct: 708 ccaagctgaagagcctcatccgcctggtgaagcactggtaccaacagtgtaagaagagac 649
Query: 743 atggaaataaactgcccccacagtatgccctggagctcctgacagtctatgcatgggagc 802
|||| || ||||||||| ||||||||||||||||| | ||||| ||||||| |||||||
Sbjct: 648 atgggaaaaaactgccctcacagtatgccctggagttgctgactatctatgcctgggagc 589
Query: 803 aaggaagcgggaaaacagattttagcacagctcagggatttcagactgttttggaattag 862
| | | || |||||| | || || |||||| | ||||||| |||||||||||| ||||
Sbjct: 588 aggaaggctcaaaaacaaaattcaggacagctgaaggatttcggactgttttggagttag 529
Query: 863 tcctaaagcataagaagctttgcatcttctgggaagcatattataactttaaaaaccct 921
|||| |||||| || | || ||||||| |||| || |||||| ||||| ||||||||
Sbjct: 528 tcctgaagcatcaggacctctgcatctactggaaaaagtattatgactttgaaaaccct 470
Score = 58.0 bits (29), Expect = 7e-07
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 955 aaacccaggcctgtgattctggacccggc 983
|||||||||||||||||||||||||||||
Sbjct: 436 aaacccaggcctgtgattctggacccggc 408
>gnl|UG|Bt#S14866661 702461 MARC 6BOV Bos taurus cDNA 3', mRNA
sequence /clone_end=3' /gb=CB448333 /gi=29254715
/ti=424098305 /ug=Bt.33955 /len=817
Length = 817
Score = 133 bits (67), Expect = 2e-29
Identities = 127/147 (86%)
Strand = Plus / Minus
Query: 748 aataaactgcccccacagtatgccctggagctcctgacagtctatgcatgggagcaagga 807
||||| |||||||||||||||||||||||||| ||||| |||||||| ||||| ||||||
Sbjct: 536 aataacctgcccccacagtatgccctggagctgctgaccgtctatgcctgggaacaagga 477
Query: 808 agcgggaaaacagattttagcacagctcagggatttcagactgttttggaattagtccta 867
|||| ||| |||| || ||||||||||||||||||| |||||||||||| ||| || |
Sbjct: 476 agcgcaaaaccagaattcagcacagctcagggatttcggactgttttggagttaatcttg 417
Query: 868 aagcataagaagctttgcatcttctgg 894
|||||| || | || ||||||| ||||
Sbjct: 416 aagcatcaggacctctgcatctactgg 390
Score = 58.0 bits (29), Expect = 7e-07
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 955 aaacccaggcctgtgattctggacccggc 983
|||||||||||||||||||||||||||||
Sbjct: 329 aaacccaggcctgtgattctggacccggc 301
>gnl|UG|Mm#S9731636 Mus musculus 2'-5'olygoadenylate synthetase 1G
(Oas1g) mRNA, complete cds /cds=p(37,1140) /gb=AF480417
/gi=21591585 /ug=Mm.14301 /len=1993
Length = 1993
Score = 125 bits (63), Expect = 4e-27
Identities = 159/191 (83%)
Strand = Plus / Plus
Query: 610 tccctagggaaagagggcgagttttccacctgcttcacggagctgcagcgagacttcctg 669
||||| ||||| || |||||||| || ||||||||||||||||| ||||| ||||||||
Sbjct: 574 tccctggggaaggatggcgagttctctacctgcttcacggagctccagcggaacttcctg 633
Query: 670 aggaaccgaccaaccaagctgaagagcctcatccgccttgtcaagcactggtaccagacg 729
| | | || ||||||||||||||||| ||||||||||| ||||| ||||||||||| |
Sbjct: 634 aagcagcgcccaaccaagctgaagagtctcatccgcctggtcaaacactggtaccaactg 693
Query: 730 tgtaagaagcctcatggaaataaactgcccccacagtatgccctggagctcctgacagtc 789
|||||| || | || || ||||||||||||||||||||||||||| || || |||
Sbjct: 694 tgtaaggagaagctggggaagccactgcccccacagtatgccctggagctactcactgtc 753
Query: 790 tatgcatggga 800
||||| |||||
Sbjct: 754 tatgcctggga 764
Score = 97.6 bits (49), Expect = 9e-19
Identities = 130/157 (82%)
Strand = Plus / Plus
Query: 192 tttcctgaaggagaggtgcttccaggggaccgccgaccctgttcgcgtctccaaagttgt 251
||||||||||||||| |||||||| || | ||| |||| || | |||||||| || ||
Sbjct: 156 tttcctgaaggagagatgcttccaaggtgctgcccacccagtgagggtctccaaggtggt 215
Query: 252 gaagggtggctcctcgggcaaaggcacgaccctcaggggccgatcagatgctgacctcgt 311
||||||||||||||| ||||||||||| || |||| |||| | ||||| |||||||| ||
Sbjct: 216 gaagggtggctcctcaggcaaaggcaccacactcaagggcaggtcagacgctgacctggt 275
Query: 312 cgtcttcctcaccaagctcacaagttttgaggatcag 348
|| ||||| | ||| ||||| || ||||||||||||
Sbjct: 276 ggtgttccttaacaatctcaccagctttgaggatcag 312
Score = 65.9 bits (33), Expect = 3e-09
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 488 ccccccagctccagcaggaggtggagtttgatgtcctgcccgcctttgatgccctgggtc 547
||||||| || || |||||||||||||||||||| || || |||||||||| ||||||||
Sbjct: 452 ccccccatctgcatcaggaggtggagtttgatgtgcttccagcctttgatgtcctgggtc 511
Query: 548 a 548
|
Sbjct: 512 a 512
Score = 36.2 bits (18), Expect = 2.7
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 959 ccaggcctgtgattctggaccc 980
||||||||||||| ||||||||
Sbjct: 923 ccaggcctgtgatcctggaccc 944
>gnl|UG|Hs#S16889176 Homo sapiens cDNA FLJ41534 fis, clone
BRTHA2016552, moderately similar to (2'-5') oligo A
synthetase E16 /gb=AK123528 /gi=34529096 /ug=Hs.524760
/len=2396
Length = 2396
Score = 103 bits (52), Expect = 1e-20
Identities = 100/116 (86%)
Strand = Plus / Plus
Query: 754 ctgcccccacagtatgccctggagctcctgacagtctatgcatgggagcaaggaagcggg 813
||||| || ||||||||||||||||||||||| |||||||| ||||||| ||| ||| |
Sbjct: 980 ctgccacctcagtatgccctggagctcctgacggtctatgcttgggagcgagggagcatg 1039
Query: 814 aaaacagattttagcacagctcagggatttcagactgttttggaattagtcctaaa 869
|||||| |||| | |||||| |||||||||| ||| || |||||||||||| ||||
Sbjct: 1040 aaaacacatttcaacacagcccagggatttcggacggtcttggaattagtcataaa 1095
Score = 40.1 bits (20), Expect = 0.17
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 960 caggcctgtgattctggacccggc 983
|||||||||||| |||||||||||
Sbjct: 1994 caggcctgtgatcctggacccggc 2017
>gnl|UG|Mm#S9306381 Mus musculus 2'-5' oligoadenylate synthetase 1B,
mRNA (cDNA clone MGC:19005 IMAGE:4016177), complete cds
/cds=p(56,1186) /gb=BC012877 /gi=15277561 /ug=Mm.233471
/len=1944
Length = 1944
Score = 71.9 bits (36), Expect = 5e-11
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 754 ctgcccccacagtatgccctggagctcctgacagtctatgcatgggag 801
|||||||||||||||||||||||||| || ||||||||||| ||||||
Sbjct: 722 ctgcccccacagtatgccctggagctgctcacagtctatgcctgggag 769
Score = 61.9 bits (31), Expect = 5e-08
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 679 ccaaccaagctgaagagcctcatccgccttgtcaagcactggtacca 725
||||||||||||||| ||||||||| ||| |||| ||||||||||||
Sbjct: 647 ccaaccaagctgaagcgcctcatccacctggtcacgcactggtacca 693
>gnl|UG|Mm#S10848007 Mus musculus 10 days neonate skin cDNA, RIKEN
full-length enriched library, clone:4732478K05
product:2'-5' oligoadenylate synthetase 1C, full insert
sequence /cds=p(364,1452) /gb=AK028986 /gi=26324941
/ug=Mm.43230 /len=2287
Length = 2287
Score = 61.9 bits (31), Expect = 5e-08
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 484 agctccccccagctccagcaggaggtggagtttgatgtcctgcccgcctttgatg 538
||||||||| ||||||||||||||||||| |||||||| | ||| |||| |||||
Sbjct: 775 agctcccccgagctccagcaggaggtggaatttgatgtgcagccagcctatgatg 829
Score = 54.0 bits (27), Expect = 1e-05
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 754 ctgcccccacagtatgccctggagctcctgacagtctatgcatggga 800
|||||||||||||| ||||||||||| || || ||||||| ||||||
Sbjct: 1057 ctgcccccacagtacgccctggagctgctcactgtctatgtatggga 1103
Score = 44.1 bits (22), Expect = 0.011
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 192 tttcctgaaggagaggtgcttccaggggaccgccgaccctgttcgcgtctccaaagttgt 251
||||||||||||||| |||||||| || ||||| | ||||| | ||||||| |||||
Sbjct: 483 tttcctgaaggagagatgcttccaaggtgccgcccatcctgtgagggtctccagggttgt 542
Query: 252 gaagggtggctcct 265
|| ||| |||||||
Sbjct: 543 gatgggcggctcct 556
Score = 38.2 bits (19), Expect = 0.69
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 696 cctcatccgccttgtcaagcactggta 722
||||||||| || ||||||||||||||
Sbjct: 999 cctcatccgtctggtcaagcactggta 1025
>gnl|UG|Hs#S3217380 Homo sapiens P/OKcl.4 mRNA for 2'-5'
oligoadenylate synthetase 3, complete cds.
/cds=p(180,3443) /gb=AB044545 /gi=11527772 /ug=Hs.528634
/len=6765
Length = 6765
Score = 58.0 bits (29), Expect = 7e-07
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 682 accaagctgaagagcctcatccgccttgtcaagcactggtaccag 726
||||||||||||||||| ||||| || || |||||||||||||||
Sbjct: 2997 accaagctgaagagcctgatccggctggtgaagcactggtaccag 3041
Score = 42.1 bits (21), Expect = 0.044
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 952 aagaaacccaggcctgtgattctggaccc 980
|||| ||||||||||||||| ||||||||
Sbjct: 1044 aagagacccaggcctgtgatcctggaccc 1072
Score = 36.2 bits (18), Expect = 2.7
Identities = 33/38 (86%)
Strand = Plus / Plus
Query: 766 tatgccctggagctcctgacagtctatgcatgggagca 803
||||||||||||||||| || ||| ||| ||||||||
Sbjct: 2067 tatgccctggagctcctcaccatctttgcctgggagca 2104
Score = 36.2 bits (18), Expect = 2.7
Identities = 57/70 (81%)
Strand = Plus / Plus
Query: 253 aagggtggctcctcgggcaaaggcacgaccctcaggggccgatcagatgctgacctcgtc 312
||||||||||| || | ||||||||| | || | ||||| |||||||| ||||||||
Sbjct: 2580 aagggtggctcttcagccaaaggcacagctctgcgaggccgctcagatgccgacctcgtg 2639
Query: 313 gtcttcctca 322
|| |||||||
Sbjct: 2640 gtgttcctca 2649
Database: UniGene(Bt+Hs+Ssc+Mm)
Posted date: Mar 18, 2005 8:01 PM
Number of letters in database: 222,131,506
Number of sequences in database: 151,043
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 983
length of database: 222,131,506
effective HSP length: 19
effective length of query: 964
effective length of database: 219,261,689
effective search space: 211368268196
effective search space used: 211368268196
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)