>20050322C-005468 (20050322C-005468) 20050322C-005468 TGACGTCCAG GTGCGCCAGC GCCGCCGGCC CCGCCGCGCG GTGGCTGCTG GGTGCCGCAA GCCTTCCCTT TCCTCGCCTC TCGTTTCCCC CCTCCCATCC CGTTTCCTCG GCCGCTCCGC TCCCTGGCGT GACTCGGCAC TGAGAGCCCC GGGAGAAGAC GCCACGGTCG CCACCTCCTG TGTCCAGGCC TCGGCCTTCC TGAGTCTACC CCCGTCCCCT CCCGGGTCGT CTTCTCCTTC AGTTTTGAAA CCGGTGGCGT CGCGGCCACC TTGCCAGGCT CTCTGAGAAT GGTAGGTGTA AAGCCGGTCG GGAGTGACCC GGATTTCCAG CCGGAGCTGA GCGGCGCGGG CTCCAGACTC GCTGTGGTCA AATTCACCAT GCGAGGGTGT GGACCATGTT TAAGGATTGC CCCAGCATTC AGTTCTATGA GTAATAAGTA TCCACAAGCA GTTTTCTTGG AAGTAGATGT ACATCAGTGT CAGGGAACTG CTGCCACCAA CAACATATCA GCGACACCTA CATTTTTGTT TTTCCGAAAC AAAGTGAGAA TTGATCAGTA TCAAGGAGCA GATGCCGTGG GATTAGAAGA AAAAATCAAG CAGCACTTAG AAAACGACCC TGGAAGCAAT GAGGACACAG ATATTCCAAA AGGCTATATG GATTTAATGC CTTTTATTAA CAAAGCTGGC TGTGAATGTC TTAATGAAAG TGACGAGCAT GGATTTGACA ACTGTTTACG AAAAGACATG ACCTTCCTGG AATCTGATTG TGATGAACAG CTACTTATTA CTGTGGCATT CAATCAGCCT GTTAAGCTTT ACTCAATGAA ATTTCAAGGG CCAGATAATG GTCAGGGTCC TAAATATGTA AAAATTTTTA TCAATCTACC CCGATCTATG GATTTTGAAG AGGCAGAAAG AAGCGAACCA ACTCAAGCTC TGGAACTTAC AGAGGATGAT ATTAAAGAAG ATGGTATTGT TCCACTTCGT TATGTTAAGT TTCAGAATGT TAACAGTGTA ACTATATTTG TTCAGTCCAA TCAAGGTGAA GAAGAAAACA CAGGAATTCA TATTTTACTT TTATTGGGAC TCCGGTCCAG GCACCAATAT GAATGACTTC AACGAGTA
Query= 20050322C-005468 (20050322C-005468) 20050322C-005468
(1128 letters)
Database: UniGene(Bt+Hs+Ssc+Mm)
151,043 sequences; 222,131,506 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gnl|UG|Ssc#S23213387 Sus scrofa clone Clu_2025.scr.msk.p1.Contig... 2083 0.0
Alignment gnl|UG|Mm#S10859600 Mus musculus 12 days embryo spinal ganglion ... 1039 0.0
Alignment gnl|UG|Hs#S6119497 UI-H-EU1-baj-n-23-0-UI.s1 NCI_CGAP_Ct1 Homo s... 40 0.20
Alignment gnl|UG|Hs#S16820020 Homo sapiens mRNA; cDNA DKFZp686D19118 (from... 40 0.20
Alignment gnl|UG|Hs#S4284383 Homo sapiens mRNA for FLJ00143 protein. /cds=... 40 0.20
Alignment gnl|UG|Mm#S10836062 Mus musculus adult male corpus striatum cDNA... 40 0.20
Alignment gnl|UG|Hs#S14863475 Homo sapiens germinal center B-cell expresse... 38 0.79
Alignment gnl|UG|Hs#S2038970 hj08h10.y1 Soares_NFL_T_GBC_S1 Homo sapiens c... 38 0.79
Alignment gnl|UG|Hs#S816247 Homo sapiens mRNA for KIAA0353 gene, partial c... 38 0.79
Alignment gnl|UG|Hs#S1732420 Homo sapiens forkhead box F1 (FOXF1), mRNA /c... 38 0.79
>gnl|UG|Ssc#S23213387 Sus scrofa clone Clu_2025.scr.msk.p1.Contig1,
mRNA sequence /gb=AY609590 /gi=52351185 /ug=Ssc.4829
/len=2782
Length = 2782
Score = 2083 bits (1051), Expect = 0.0
Identities = 1083/1091 (99%), Gaps = 2/1091 (0%)
Strand = Plus / Plus
Query: 34 ccgcgcggtggctgctgggtgccgcaagccttccctttcctcgcctctcgtttcccccct 93
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccgcgcggtggctgctgggtgccgcaagccttccctttcctcgcctctcgtttcccccct 60
Query: 94 cccatcccgtttcctcggccgctccgctccctggcgtgactcggcactgagagccccggg 153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cccatcccgtttcctcggccgctccgctccctggcgtgactcggcactgagagccccggg 120
Query: 154 agaagacgccacggtcgccacctcctgtgtccaggcctcggccttcctgagtctaccccc 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agaagacgccacggtcgccacctcctgtgtccaggcctcggccttcctgagtctaccccc 180
Query: 214 gtcccctcccgggtcgtcttctccttcagttttgaaaccggtggcgtcgcggccaccttg 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gtcccctcccgggtcgtcttctccttcagttttgaaaccggtggcgtcgcggccaccttg 240
Query: 274 ccaggctctctgagaatggtaggtgtaaagccggtcgggagtgacccggatttccagccg 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ccaggctctctgagaatggtaggtgtaaagccggtcgggagtgacccggatttccagccg 300
Query: 334 gagctgagcggcgcgggctccagactcgctgtggtcaaattcaccatgcgagggtgtgga 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gagctgagcggcgcgggctccagactcgctgtggtcaaattcaccatgcgagggtgtgga 360
Query: 394 ccatgtttaaggattgccccagcattcagttctatgagtaataagtatccacaagcagtt 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ccatgtttaaggattgccccagcattcagttctatgagtaataagtatccacaagcagtt 420
Query: 454 ttcttggaagtagatgtacatcagtgtcagggaactgctgccaccaacaacatatcagcg 513
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ttcttggaagtggatgtacatcagtgtcagggaactgctgccaccaacaacatatcagcg 480
Query: 514 acacctacatttttgtttttccgaaacaaagtgagaattgatcagtatcaaggagcagat 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 acacctacatttttgtttttccgaaacaaagtgagaattgatcagtatcaaggagcagat 540
Query: 574 gccgtgggattagaagaaaaaatcaagcagcacttagaaaacgaccctggaagcaatgag 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gccgtgggattagaagaaaaaatcaagcagcacttagaaaacgaccctggaagcaatgag 600
Query: 634 gacacagatattccaaaaggctatatggatttaatgccttttattaacaaagctggctgt 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gacacagatattccaaaaggctatatggatttaatgccttttattaacaaagctggctgt 660
Query: 694 gaatgtcttaatgaaagtgacgagcatggatttgacaactgtttacgaaaagacatgacc 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 gaatgtcttaatgaaagtgacgagcatggatttgacaactgtttacgaaaagacatgacc 720
Query: 754 ttcctggaatctgattgtgatgaacagctacttattactgtggcattcaatcagcctgtt 813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ttcctggaatctgattgtgatgaacagctacttattactgtggcattcaatcagcctgtt 780
Query: 814 aagctttactcaatgaaatttcaagggccagataatggtcagggtcctaaatatgtaaaa 873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 aagctttactcaatgaaatttcaagggccagataatggtcagggtcctaaatatgtaaaa 840
Query: 874 atttttatcaatctaccccgatctatggattttgaagaggcagaaagaagcgaaccaact 933
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 atttttatcaatctaccccgatctatggattttgaagaggcagaaagaagcgaaccaact 900
Query: 934 caagctctggaacttacagaggatgatattaaagaagatggtattgttccacttcgttat 993
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 caagctctggaactaacagaggatgatattaaagaagatggtattgttccacttcgttat 960
Query: 994 gttaagtttcagaatgttaacagtgtaactatatttgttcagtccaatcaaggtgaagaa 1053
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 gttaagtttcagaatgttaacagtgtaactatatttgttcagtccaatcaaggtgaagaa 1020
Query: 1054 gaaaacacaggaa-ttcatattttacttttattgggactccggtccaggc-accaatatg 1111
|||| ||| ||| |||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 1021 gaaacaacaagaatttcatattttacttttattgggactccggtccaggcaacaaatatg 1080
Query: 1112 aatgacttcaa 1122
|||||||||||
Sbjct: 1081 aatgacttcaa 1091
>gnl|UG|Mm#S10859600 Mus musculus 12 days embryo spinal ganglion cDNA,
RIKEN full-length enriched library, clone:D130066E24
product:thioredoxin-like (32kD), full insert sequence
/gb=AK051698 /gi=26094711 /ug=Mm.19169 /len=2647
Length = 2647
Score = 1039 bits (524), Expect = 0.0
Identities = 803/891 (90%), Gaps = 5/891 (0%)
Strand = Plus / Plus
Query: 237 cttcagttttgaaaccggtggcgtcgcggccaccttgccaggctctctgaga--atggta 294
|||||||||||| |||| ||||||||||| || |||| ||||||||| || |||||
Sbjct: 107 cttcagttttgaggccggaagcgtcgcggccgccctgccgggctctctgtgaggatggtg 166
Query: 295 ggtgtaaagccggtcgggagtgacccggatttccagccggagctgagc-ggcgcgggctc 353
|| || |||||||||||||| || || ||||||||||||||||||||| || ||||||||
Sbjct: 167 ggagtgaagccggtcgggagcgatccagatttccagccggagctgagccggggcgggctc 226
Query: 354 cagactcgctgtggtcaaattcaccatgcgagggtgtggaccatgtttaaggattgcccc 413
|||||| || |||||||| ||||||||| ||||||||||||| ||| | ||||||||||
Sbjct: 227 cagacttgccgtggtcaagttcaccatgagagggtgtggaccgtgtcttcggattgcccc 286
Query: 414 agcattcagttctatgagtaataagtatccacaagcagttttcttggaagtagatgtaca 473
|| ||||| ||||||||||||||||| ||||| ||||| ||||||||||||||||| ||
Sbjct: 287 ggcgttcagctctatgagtaataagtacccacaggcagtcttcttggaagtagatgtgca 346
Query: 474 tcagtgtcagggaactgctgccaccaacaacatatcagcgacacctacatttttgttttt 533
|||||| |||||||| ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 347 tcagtgccagggaacagctgccaccaacaacatatcagcaacacctacgtttttgttttt 406
Query: 534 ccgaaacaaagtgagaattgatcagtatcaaggagcagatgccgtgggattagaagaaaa 593
||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||| ||
Sbjct: 407 tcgaaacaaagtgagaatcgatcagtatcaaggagcagatgctgtgggactagaagagaa 466
Query: 594 aatcaagcagcacttagaaaacgaccctggaagcaatgaggacacagatattccaaaagg 653
||||||||||||||||||||| || |||||||||||||||||| |||| |||||||| ||
Sbjct: 467 aatcaagcagcacttagaaaatgatcctggaagcaatgaggacgcagacattccaaaggg 526
Query: 654 ctatatggatttaatgccttttattaacaaagctggctgtgaatgtcttaatgaaagtga 713
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 527 ctatatggatttaatgccttttattaacaaagctggttgtgaatgtcttaatgaaagtga 586
Query: 714 cgagcatggatttgacaactgtttacgaaaagacatgaccttcctggaatctgattgtga 773
||||| || ||||||||||||||||||||||||||| ||||| |||| ||||| |||||
Sbjct: 587 tgagcacggctttgacaactgtttacgaaaagacatgtccttcttggagtctgactgtga 646
Query: 774 tgaacagctacttattactgtggcattcaatcagcctgttaagctttactcaatgaaatt 833
||| ||||| |||||||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct: 647 tgagcagctccttattactgtggcattcaatcagcctgttaagctttattccatgaagtt 706
Query: 834 tcaagggccagataatggtcagggtcctaaatatgtaaaaatttttatcaatctaccccg 893
|||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 707 tcaaggaccagataacggtcagggtcctaaatatgtaaaaatttttatcaacctaccccg 766
Query: 894 atctatggattttgaagaggcagaaagaagcgaaccaactcaagctctggaacttacaga 953
||||||||||||||| ||||| ||||| || || |||||||||||||||||||| |||||
Sbjct: 767 atctatggattttgaggaggcggaaaggagtgagccaactcaagctctggaactgacaga 826
Query: 954 ggatgatattaaagaagatggtattgttccacttcgttatgttaagtttcagaatgttaa 1013
||||| |||||||||||||| |||||||| |||||||||||||| ||||||||||| ||
Sbjct: 827 agatgacattaaagaagatggcattgttcctcttcgttatgttaaatttcagaatgtcaa 886
Query: 1014 cagtgtaactatatttgttcagtccaatcaaggtgaagaagaaaacac-aggaattcata 1072
|||||||||| ||||||||||||| |||||||| |||||||||| || || | ||||||
Sbjct: 887 cagtgtaactttatttgttcagtctaatcaaggagaagaagaaacaacgagaatttcata 946
Query: 1073 ttttacttttattgggactccggtccaggc-accaatatgaatgacttcaa 1122
||||||||| ||||| ||||| |||||||| || |||||||||||||||||
Sbjct: 947 ttttactttcattggtactccagtccaggcaacaaatatgaatgacttcaa 997
>gnl|UG|Hs#S6119497 UI-H-EU1-baj-n-23-0-UI.s1 NCI_CGAP_Ct1 Homo
sapiens cDNA clone UI-H-EU1-baj-n-23-0-UI 3', mRNA
sequence /clone=UI-H-EU1-baj-n-23-0-UI /clone_end=3'
/gb=CA414219 /gi=24776870 /ug=Hs.420564 /len=748
Length = 748
Score = 40.1 bits (20), Expect = 0.20
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 858 tcctaaatatgtaaaaattt 877
||||||||||||||||||||
Sbjct: 359 tcctaaatatgtaaaaattt 378
>gnl|UG|Hs#S16820020 Homo sapiens mRNA; cDNA DKFZp686D19118 (from
clone DKFZp686D19118) /gb=BX641064 /gi=34364986
/ug=Hs.325960 /len=4571
Length = 4571
Score = 40.1 bits (20), Expect = 0.20
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 814 aagctttactcaatgaaatt 833
||||||||||||||||||||
Sbjct: 3583 aagctttactcaatgaaatt 3564
>gnl|UG|Hs#S4284383 Homo sapiens mRNA for FLJ00143 protein.
/cds=p(1,1122) /gb=AK074072 /gi=18676491 /ug=Hs.126655
/len=5496
Length = 5496
Score = 40.1 bits (20), Expect = 0.20
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 183 tccaggcctcggccttcctg 202
||||||||||||||||||||
Sbjct: 4977 tccaggcctcggccttcctg 4996
>gnl|UG|Mm#S10836062 Mus musculus adult male corpus striatum cDNA,
RIKEN full-length enriched library, clone:C030019I05
product:hypothetical Fibronectin type III structure
containing protein, full insert sequence /cds=p(49,729)
/gb=AK081240 /gi=26349068 /ug=Mm.39600 /len=2263
Length = 2263
Score = 40.1 bits (20), Expect = 0.20
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 935 aagctctggaacttacagag 954
||||||||||||||||||||
Sbjct: 2030 aagctctggaacttacagag 2049
>gnl|UG|Hs#S14863475 Homo sapiens germinal center B-cell expressed
transcript 1 isoform A (GCET1) mRNA, complete cds;
alternatively spliced /cds=p(76,1383) /gb=AY220118
/gi=29165289 /ug=Hs.317970 /len=1787
Length = 1787
Score = 38.2 bits (19), Expect = 0.79
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 1064 gaattcatattttacttttattg 1086
|||||||||||||| ||||||||
Sbjct: 1746 gaattcatattttagttttattg 1724
>gnl|UG|Hs#S2038970 hj08h10.y1 Soares_NFL_T_GBC_S1 Homo sapiens cDNA
clone IMAGE:2981251 5', mRNA sequence
/clone=IMAGE:2981251 /clone_end=5' /gb=BE041827
/gi=8358880 /ug=Hs.274837 /len=412
Length = 412
Score = 38.2 bits (19), Expect = 0.79
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 447 agcagttttcttggaagta 465
|||||||||||||||||||
Sbjct: 250 agcagttttcttggaagta 268
>gnl|UG|Hs#S816247 Homo sapiens mRNA for KIAA0353 gene, partial cds.
/cds=p(12,4856) /gb=AB002351 /gi=27529709 /ug=Hs.207106
/len=7381
Length = 7381
Score = 38.2 bits (19), Expect = 0.79
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 13 gcgccagcgccgccggccccgccgcgc 39
||||| ||||| |||||||||||||||
Sbjct: 658 gcgcccgcgccaccggccccgccgcgc 684
>gnl|UG|Hs#S1732420 Homo sapiens forkhead box F1 (FOXF1), mRNA
/cds=p(94,1158) /gb=NM_001451 /gi=4503732 /ug=Hs.155591
/len=2510
Length = 2510
Score = 38.2 bits (19), Expect = 0.79
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 20 cgccgccggccccgccgcgcggtggctgctg 50
|||||||| | |||||| |||||||||||||
Sbjct: 70 cgccgccgccgccgccgtgcggtggctgctg 40
Database: UniGene(Bt+Hs+Ssc+Mm)
Posted date: Mar 18, 2005 8:01 PM
Number of letters in database: 222,131,506
Number of sequences in database: 151,043
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 1128
length of database: 222,131,506
effective HSP length: 19
effective length of query: 1109
effective length of database: 219,261,689
effective search space: 243161213101
effective search space used: 243161213101
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)