>20050322C-007257 (20050322C-007257) 20050322C-007257 CATGCGCCAC AAAAGGTTCC GATCCGGAAA CTACCCATCC TCGTTAAGCA ACGAGACAGA CCGCCTGGTA CACTGGTGCC ACGGGGCGCC CGGCGTCATC CACACGCTCA TGCAGGCGTA CAAGGTGTTT AAGGAGGAGA AGTACCTGAG GGACGCCGTG GAGTGCAGCG ACGTGATTTG GCAGCGGGGC CTGCTGCGCA AGGGCTACGG CATCTGCCAC GGGACTGCGG GCAACGGCTA CTCCTTCCTC TCCCTTTACC GCCTCACGCA GGACAAGAAG TACCTCTACC GAGCTTGCAA GTTTGCAGAG TGGTGTCTGG AGTACGGAGC ACATGGTTGC CGCATTCCCG ACAGGCCCTA CTCTCTCTTC GAAGGCATGG CCGGCGCCAT TCACTTCCTC TCCGACATCC TGGCCCCCGA GACAGCACGG TTTCCAGCAT TTGAACTCGG CTCTTCAGAG AGGGATCCAA AGGTGCAAAA AGACTCCTAA GGGACCCGAC GGGACCACAG GCCGCCAGGT TGCCTGGCGC CTGACACAGA AGCCACCGTG CATCCTGAGG AAGGGAGGAC GGAGGGAGCA GAGCCCCGCA GACCCCCGCC CCGCCAGCCT GCTGTGCTCC CCTCGCTGGT GTCAGCGTGA CGTCTCCGTG TCCAGTGCTG CGTAATGTTT GCATGTCCCT CGGTGTTTGC TCTCCGTAGG CGTAGGTTGT TCTCAGCGGA AGCCCTTCTC TGTCCATGAG CCCGAGCTGG CCGTGCATGA GGGCACACAG CAGCCCCTTC TCCGTACCCA ATAAAGCGGG GTGCTTCTGT ATTGGCAGAC AGGACACAGG CAGGTGGTGT CTCTCTTATG TACCAGAAAG ACTCTCTTTT AAGATGCCAT CCCAGTGTGA GACTTTTCCC AGCATTTCCT GTGGGACCCT TTTGGGGGAG CTTGAGAGAA AGACTGCTCC AGAAATGAAA AGAAATAGCG GAGGTAGAGG GGCTTTCGCT GGA
Query= 20050322C-007257 (20050322C-007257) 20050322C-007257
(993 letters)
Database: UniGene(Bt+Hs+Ssc+Mm)
151,043 sequences; 222,131,506 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gnl|UG|Ssc#S6048718 386896 MARC 2PIG Sus scrofa cDNA 5', mRNA se... 950 0.0
Alignment gnl|UG|Bt#S21669081 BovGen_06533 normal cattle brain Bos taurus ... 502 e-140
Alignment gnl|UG|Hs#S2294018 Homo sapiens LanC lantibiotic synthetase comp... 472 e-131
Alignment gnl|UG|Ssc#S19543697 948948 MARC 4PIG Sus scrofa cDNA 3', mRNA s... 145 4e-33
Alignment gnl|UG|Hs#S4630812 Homo sapiens phosphofurin acidic cluster sort... 38 0.70
Alignment gnl|UG|Hs#S15898529 Homo sapiens cDNA clone IMAGE:5268504, parti... 38 0.70
Alignment gnl|UG|Hs#S2329718 Homo sapiens mRNA; cDNA DKFZp761H0610 (from c... 38 0.70
Alignment gnl|UG|Mm#S8113312 Mus musculus interleukin-18 binding protein c... 38 0.70
Alignment gnl|UG|Hs#S1898783 xn15c07.y1 NCI_CGAP_Li5 Homo sapiens cDNA clo... 36 2.8
Alignment gnl|UG|Hs#S3988796 Homo sapiens cDNA FLJ32873 fis, clone TESTI20... 36 2.8
>gnl|UG|Ssc#S6048718 386896 MARC 2PIG Sus scrofa cDNA 5', mRNA
sequence /clone_end=5' /gb=BI360132 /gi=15056160
/ti=470953590 /ug=Ssc.5603 /len=835
Length = 835
Score = 950 bits (479), Expect = 0.0
Identities = 572/598 (95%), Gaps = 10/598 (1%)
Strand = Plus / Plus
Query: 234 acggctactccttcctctccctttaccgcctcacgcaggacaagaagtacctctaccgag 293
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 154 acggctactccttcctctccctttaccgcctcacgcagga-aagaa-tacctctaccgag 211
Query: 294 cttgcaagtttgcagagtggtgtctggagtacggagcacatggttgccgcattcccgaca 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 cttgcaagtttgcagagtggtgtctggagtacggagcacatggttgccgcattcccgaca 271
Query: 354 ggccctactctctcttcgaaggcatggccggcgccattcacttcctctccgacatcctgg 413
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 272 ggccctactctctcttcgaag-catggccggcgccattcacttcctctccgacatcctgg 330
Query: 414 cccccgagacagcacggtttccagcatttgaactcggctcttcagagagggatccaaagg 473
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 cccccgaaacagcacggtttccagcatttgaactcggctcttcagagagggatccaaagg 390
Query: 474 tgcaaaaagactcctaagggacccgacgggaccacaggccgccaggttgcctggcgcctg 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tgcaaaaagactcctaagggacccgacgggaccacaggccgccaggttgcctggcgcctg 450
Query: 534 acacagaagccaccgtgcatcctgaggaagggaggacggagggagcagagccccgcagac 593
||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||
Sbjct: 451 acacagaagccaccgtgcatcctgaggaaaggaggacggagggagcatatccccgcagac 510
Query: 594 ccccgccccgccagcctgct------gtgctcccctcgctggtgtcagcgtgacgtctcc 647
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 511 ccccgccccgccagcctgctgtgaccgtgctcccctcgctggtgtcagcgtgacgtctcc 570
Query: 648 gtgtccagtgctgcgtaatgtttgcatgtccctcggtgtttgctctccgtaggcgtaggt 707
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 571 gtgtccagtgctgcgtaatgtttgcatgtccctcggtgtttgctctccctaagcgtaggt 630
Query: 708 tgttctcagcggaagcccttctctgtccatgagcccgagctggccgtgcatgagggcaca 767
|||||||| ||||| |||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 631 tgttctcaacggaaacccttctctggccatgagccccgactggccgtgcatgagggcaca 690
Query: 768 cagcagccccttctccgtacccaataaagcggggtgc-ttctgtattggcagacagga 824
||| |||||||| |||| |||||||||| |||||||| ||||||||||||||||||||
Sbjct: 691 caggagccccttttccggacccaataaaacggggtgctttctgtattggcagacagga 748
>gnl|UG|Bt#S21669081 BovGen_06533 normal cattle brain Bos taurus
cDNA clone RZPDp1056M0826Q 5', mRNA sequence
/clone=RZPDp1056M0826Q /clone_end=5' /gb=CO878208
/gi=51808124 /ug=Bt.35028 /len=676
Length = 676
Score = 502 bits (253), Expect = e-140
Identities = 436/497 (87%)
Strand = Plus / Plus
Query: 45 taagcaacgagacagaccgcctggtacactggtgccacggggcgcccggcgtcatccaca 104
||||||| ||||||||||||||||| || ||||||||||| || || || |||||||||
Sbjct: 30 taagcaatgagacagaccgcctggtgcattggtgccacggcgcccctggtgtcatccacg 89
Query: 105 cgctcatgcaggcgtacaaggtgtttaaggaggagaagtacctgagggacgccgtggagt 164
||||||||||||| ||||||| |||||||||||||||||||||| |||||| |||||||
Sbjct: 90 tgctcatgcaggcgcacaaggtttttaaggaggagaagtacctgaaggacgcagtggagt 149
Query: 165 gcagcgacgtgatttggcagcggggcctgctgcgcaagggctacggcatctgccacggga 224
|||||||||||||||||||||| || |||||||| |||||||| || |||||||||||||
Sbjct: 150 gcagcgacgtgatttggcagcgaggtctgctgcggaagggctatgggatctgccacggga 209
Query: 225 ctgcgggcaacggctactccttcctctccctttaccgcctcacgcaggacaagaagtacc 284
|||| || || |||||||||||||| |||||||||| | |||| ||||| || |||||||
Sbjct: 210 ctgctgggaatggctactccttcctttccctttaccacatcacacaggataaaaagtacc 269
Query: 285 tctaccgagcttgcaagtttgcagagtggtgtctggagtacggagcacatggttgccgca 344
|||||||||||||||||||||||||||||||||| || || ||||||||||| ||||| |
Sbjct: 270 tctaccgagcttgcaagtttgcagagtggtgtctagaatatggagcacatggctgccgaa 329
Query: 345 ttcccgacaggccctactctctcttcgaaggcatggccggcgccattcacttcctctccg 404
|||| ||||| ||||| |||||||| ||||||||||| ||| | |||||||||||||| |
Sbjct: 330 ttcctgacagaccctattctctctttgaaggcatggctggcactattcacttcctctctg 389
Query: 405 acatcctggcccccgagacagcacggtttccagcatttgaactcggctcttcagagaggg 464
||||||||||||| ||| || ||||||||||||||||||||||| |||||||| ||||||
Sbjct: 390 acatcctggccccagaggcatcacggtttccagcatttgaactcagctcttcacagaggg 449
Query: 465 atccaaaggtgcaaaaagactcctaagggacccgacgggaccacaggccgccaggttgcc 524
|| ||||||| |||||||||| |||| || ||| |||||| | ||| |||||||||
Sbjct: 450 atacaaaggttcaaaaagactagtaagagatttgactggaccagaagccaccaggttgct 509
Query: 525 tggcgcctgacacagaa 541
| |||||||||||||
Sbjct: 510 gagtgcctgacacagaa 526
>gnl|UG|Hs#S2294018 Homo sapiens LanC lantibiotic synthetase component
C-like 2 (bacterial) (LANCL2), mRNA /cds=p(579,1931)
/gb=NM_018697 /gi=50593015 /ug=Hs.224282 /len=4353
Length = 4353
Score = 472 bits (238), Expect = e-131
Identities = 421/482 (87%)
Strand = Plus / Plus
Query: 3 tgcgccacaaaaggttccgatccggaaactacccatcctcgttaagcaacgagacagacc 62
|||||||||||| |||||||| || || |||||||| || |||||||| || |||||||
Sbjct: 1465 tgcgccacaaaaaattccgatctgggaattacccatcatcattaagcaatgaaacagacc 1524
Query: 63 gcctggtacactggtgccacggggcgcccggcgtcatccacacgctcatgcaggcgtaca 122
| ||||| |||||||||||||| || || || |||||||||| |||||||||||||||||
Sbjct: 1525 ggctggtgcactggtgccacggcgccccgggggtcatccacatgctcatgcaggcgtaca 1584
Query: 123 aggtgtttaaggaggagaagtacctgagggacgccgtggagtgcagcgacgtgatttggc 182
|||| |||||||||||||||||| ||| || ||| ||||||| ||||| ||||||||||
Sbjct: 1585 aggtctttaaggaggagaagtacttgaaagaggccatggagtgtagcgatgtgatttggc 1644
Query: 183 agcggggcctgctgcgcaagggctacggcatctgccacgggactgcgggcaacggctact 242
|||| || ||||||| ||||||||||| || ||||| |||||||| ||||||||||| |
Sbjct: 1645 agcgaggtttgctgcggaagggctacgggatatgccatgggactgctggcaacggctatt 1704
Query: 243 ccttcctctccctttaccgcctcacgcaggacaagaagtacctctaccgagcttgcaagt 302
||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1705 ccttcctgtccctttaccgtctcacgcaggataagaagtacctctaccgagcttgcaagt 1764
Query: 303 ttgcagagtggtgtctggagtacggagcacatggttgccgcattcccgacaggccctact 362
|||||||||||||||| || ||||||||||| || ||||||||||| ||||| ||||| |
Sbjct: 1765 ttgcagagtggtgtctagattacggagcacacgggtgccgcattcctgacagaccctatt 1824
Query: 363 ctctcttcgaaggcatggccggcgccattcacttcctctccgacatcctggcccccgaga 422
| ||||| ||||||||||| ||||| |||||||| ||||| || |||||| || ||||
Sbjct: 1825 cgctctttgaaggcatggctggcgctattcactttctctctgatgtcctgggaccagaga 1884
Query: 423 cagcacggtttccagcatttgaactcggctcttcagagagggatccaaaggtgcaaaaag 482
|| |||||||||||||||||||||| | |||||| |||||||| ||||||||||||||
Sbjct: 1885 catcacggtttccagcatttgaacttgactcttcgaagagggattaaaaggtgcaaaaag 1944
Query: 483 ac 484
||
Sbjct: 1945 ac 1946
>gnl|UG|Ssc#S19543697 948948 MARC 4PIG Sus scrofa cDNA 3', mRNA
sequence /clone_end=3' /gb=CN159841 /gi=46174271
/ug=Ssc.26769 /len=747
Length = 747
Score = 145 bits (73), Expect = 4e-33
Identities = 211/257 (82%)
Strand = Plus / Minus
Query: 732 gtccatgagcccgagctggccgtgcatgagggcacacagcagccccttctccgtacccaa 791
|||||||||||| ||| | ||| ||||| ||||||||| |||||||||||| ||||||||
Sbjct: 747 gtccatgagcccaagcggcccgggcatgggggcacacaccagccccttctcggtacccaa 688
Query: 792 taaagcggggtgcttctgtattggcagacaggacacaggcaggtggtgtctctcttatgt 851
||||| |||| | || | |||||||| |||||||||||||||| ||||| | | || |||
Sbjct: 687 taaaggggggggtttttttattggcaaacaggacacaggcagggggtgttttttttttgt 628
Query: 852 accagaaagactctcttttaagatgccatcccagtgtgagacttttcccagcatttcctg 911
||| ||| | | | |||||| || ||||||| | |||||| |||||||||| |||||||
Sbjct: 627 cccaaaaaaatttttttttaaaatcccatcccggggtgagatttttcccagcttttcctg 568
Query: 912 tgggacccttttgggggagcttgagagaaagactgctccagaaatgaaaagaaatagcgg 971
||| |||||||||||| | |||| | ||||| || |||| |||| |||| ||| || ||
Sbjct: 567 ggggccccttttgggggggtttgaaaaaaagattgttccaaaaataaaaaaaaaaagggg 508
Query: 972 aggtagaggggctttcg 988
|||| ||||| |||||
Sbjct: 507 gggtaaaggggttttcg 491
>gnl|UG|Hs#S4630812 Homo sapiens phosphofurin acidic cluster sorting
protein 1-like, mRNA (cDNA clone IMAGE:4824255)
/gb=BC028418 /gi=22382100 /ug=Hs.525626 /len=3463
Length = 3463
Score = 38.2 bits (19), Expect = 0.70
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 152 gacgccgtggagtgcagcgacgt 174
|||| ||||||||||||||||||
Sbjct: 2801 gacggcgtggagtgcagcgacgt 2823
>gnl|UG|Hs#S15898529 Homo sapiens cDNA clone IMAGE:5268504, partial
cds /gb=BC052945 /gi=31324932 /ug=Hs.390285 /len=3651
Length = 3651
Score = 38.2 bits (19), Expect = 0.70
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 443 gaactcggctcttcagaga 461
|||||||||||||||||||
Sbjct: 2649 gaactcggctcttcagaga 2667
>gnl|UG|Hs#S2329718 Homo sapiens mRNA; cDNA DKFZp761H0610 (from clone
DKFZp761H0610) /gb=AL353939 /gi=7669977 /ug=Hs.95162
/len=6394
Length = 6394
Score = 38.2 bits (19), Expect = 0.70
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 566 aggacggagggagcagagc 584
|||||||||||||||||||
Sbjct: 2812 aggacggagggagcagagc 2794
>gnl|UG|Mm#S8113312 Mus musculus interleukin-18 binding protein c
precursor (IL18BP) mRNA, complete cds /cds=p(1385,1963)
/gb=AF110802 /gi=4324933 /ug=Mm.45579 /len=2612
Length = 2612
Score = 38.2 bits (19), Expect = 0.70
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 923 tgggggagcttgagagaaa 941
|||||||||||||||||||
Sbjct: 687 tgggggagcttgagagaaa 705
>gnl|UG|Hs#S1898783 xn15c07.y1 NCI_CGAP_Li5 Homo sapiens cDNA clone
IMAGE:2693772 5', mRNA sequence /clone=IMAGE:2693772
/clone_end=5' /gb=AW827233 /gi=7921006 /ug=Hs.542621
/len=201
Length = 201
Score = 36.2 bits (18), Expect = 2.8
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 238 ctactccttcctctccct 255
||||||||||||||||||
Sbjct: 93 ctactccttcctctccct 76
>gnl|UG|Hs#S3988796 Homo sapiens cDNA FLJ32873 fis, clone
TESTI2003998, weakly similar to T-CELL RECEPTOR BETA
CHAIN ANA 11 /cds=p(2,514) /gb=AK057435 /gi=16553139
/ug=Hs.537291 /len=2589
Length = 2589
Score = 36.2 bits (18), Expect = 2.8
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 611 gctgtgctcccctcgctg 628
||||||||||||||||||
Sbjct: 2383 gctgtgctcccctcgctg 2400
Database: UniGene(Bt+Hs+Ssc+Mm)
Posted date: Mar 18, 2005 8:01 PM
Number of letters in database: 222,131,506
Number of sequences in database: 151,043
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 993
length of database: 222,131,506
effective HSP length: 19
effective length of query: 974
effective length of database: 219,261,689
effective search space: 213560885086
effective search space used: 213560885086
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)