Search to UniGene2 database
Query= 20050322C-007623 (20050322C-007623) 20050322C-007623
(911 letters)
Database: UniGene(Bt+Hs+Ssc+Mm)
151,043 sequences; 222,131,506 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gnl|UG|Ssc#S22314845 CJ037501 full-length enriched swine cDNA li... 1310 0.0
Alignment gnl|UG|Mm#S9630378 Mus musculus methionine sulfoxide reductase B... 272 2e-71
Alignment gnl|UG|Ssc#S6075443 UNL-P-FN-cu-b-04-0-UNL.s1 UNL-P-FN Sus scrof... 248 4e-64
Alignment gnl|UG|Bt#S21681658 BovGen_19110 normal cattle brain Bos taurus ... 84 1e-14
Alignment gnl|UG|Hs#S1799743 UI-H-BI3-alk-f-07-0-UI.s1 NCI_CGAP_Sub5 Homo ... 38 0.64
Alignment gnl|UG|Mm#S18928515 Mus musculus PAX interacting (with transcrip... 38 0.64
Alignment gnl|UG|Hs#S14272981 Homo sapiens, clone IMAGE:5296120, mRNA /gb=... 36 2.5
Alignment gnl|UG|Hs#S4631359 Homo sapiens transglutaminase 1 (K polypeptid... 36 2.5
Alignment gnl|UG|Hs#S1824536 Homo sapiens sperm associated antigen 8 (SPAG... 36 2.5
Alignment gnl|UG|Hs#S11148146 BX117325 Soares_testis_NHT Homo sapiens cDNA... 36 2.5
>gnl|UG|Ssc#S22314845 CJ037501 full-length enriched swine cDNA
library, adult uterus Sus scrofa cDNA clone UTR01F120081
5', mRNA sequence /clone=UTR01F120081 /clone_end=5'
/gb=CJ037501 /gi=54561396 /ug=Ssc.11012 /len=800
Length = 800
Score = 1310 bits (661), Expect = 0.0
Identities = 677/681 (99%), Gaps = 1/681 (0%)
Strand = Plus / Plus
Query: 220 cagaaccgcctttcagtgggacctacctgaataacaaggaagcaggaatgtatcactgtg 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 cagaaccgcctttcagtgggacctacctgaataacaaggaagcaggaatgtatcactgtg 179
Query: 280 tgtgctgtgacagcccactcttcagctctgagaaaaagtactgctctggcactggatggc 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 tgtgctgtgacagcccactcttcagctctgagaaaaagtactgctctggcactggatggc 239
Query: 340 cttcattttctgaggctcacggcacatctggctctgatgagagtgacacagggatcctga 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 cttcattttctgaggctcacggcacatctggctctgatgagagtgacacagggatcctga 299
Query: 400 gacgtgtggacacctcgctgggaacagctcgcacggaggttgtctgcaagcagtgcgaag 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 gacgtgtggacacctcgctgggaacagctcgcacggaggttgtctgcaagcagtgcgaag 359
Query: 460 ctcaccttggccatgtgtttcctgatggacctgggcctacaggtcagaggttttgcatca 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ctcaccttggccatgtgtttcctgatggacctgggcctacaggtcagaggttttgcatca 419
Query: 520 acagtgtggcactcaagttcaaaccaaggaaacactgaccatcgccaggagtccctttct 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 acagtgtggcactcaagttcaaaccaaggaaacactgaccatcgccaggagtccctttct 479
Query: 580 cttccaccctctcatttccaaactcgattttcataatttatgcaaatgactagttttatt 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 cttccaccctctcatttccaaactcgattttcataatttatgcaaatgactagttttatt 539
Query: 640 aatgaccaaactaggctaagcttgctggcataccttctctaattcattacctggagtcag 699
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 540 aatgaccaaactaggctaagcttgctggcgtaccttctctaattcattacctggagtcag 599
Query: 700 ctccaccctggctctggctctggctagaatttcacggaatgacagaggggcagtcctttc 759
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 600 ctccaccctggctctggctctgactagaatttcacggaatgacagaggggcagtcctttc 659
Query: 760 cctt-aatcaacatctgtgggctttgccaggaccagagggcatgactctttggggacatt 818
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 ccttaaatcaacatctgtgggctttgccaggaccagagggcatgactctttggggacatt 719
Query: 819 aggaggctgatggataagccaaagaactcctataaaactatgctgaattttccattgcag 878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 aggaggctgatggataagccaaagaactcctataaaactatgctgaattttccattgcag 779
Query: 879 tcaagtggttcacagacatgt 899
||||||| |||||||||||||
Sbjct: 780 tcaagtgtttcacagacatgt 800
Score = 244 bits (123), Expect = 6e-63
Identities = 123/123 (100%)
Strand = Plus / Plus
Query: 68 agtgtggggtcgtgccgacaatggcggcctcagcccgaaggtcggaaccggagacgcagg 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agtgtggggtcgtgccgacaatggcggcctcagcccgaaggtcggaaccggagacgcagg 60
Query: 128 gtcccttacaaagcgtgagccgttcctctccaagagtgagtggcaaaagaagctgactcc 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtcccttacaaagcgtgagccgttcctctccaagagtgagtggcaaaagaagctgactcc 120
Query: 188 aga 190
|||
Sbjct: 121 aga 123
>gnl|UG|Mm#S9630378 Mus musculus methionine sulfoxide reductase B2,
mRNA (cDNA clone MGC:38012 IMAGE:5150285), complete cds
/cds=p(48,575) /gb=BC021619 /gi=18204903 /ug=Mm.27166
/len=1204
Length = 1204
Score = 272 bits (137), Expect = 2e-71
Identities = 317/377 (84%)
Strand = Plus / Plus
Query: 168 tggcaaaagaagctgactccagagcaattccacgtcacgagagaaaaagggacagaaccg 227
||||| ||||| ||||| || || || ||| | ||||| ||||| ||||| || ||| ||
Sbjct: 186 tggcagaagaaactgaccccggaacagttctatgtcaccagagagaaaggaactgaagcg 245
Query: 228 cctttcagtgggacctacctgaataacaaggaagcaggaatgtatcactgtgtgtgctgt 287
||||||||||| | || |||| |||||||| |||| ||||| || ||||||||||||
Sbjct: 246 cctttcagtggaatgtatttgaacaacaaggagacagggatgtaccattgtgtgtgctgt 305
Query: 288 gacagcccactcttcagctctgagaaaaagtactgctctggcactggatggccttcattt 347
|| |||||||||||||| |||||||| |||||||| |||||||| || ||||||||||||
Sbjct: 306 gatagcccactcttcagttctgagaagaagtactgttctggcaccggctggccttcattt 365
Query: 348 tctgaggctcacggcacatctggctctgatgagagtgacacagggatcctgagacgtgtg 407
||||||||| ||||| || ||||| ||||| ||| ||||||||||||||||||| ||
Sbjct: 366 tctgaggcttacggctcaaaaggctcagatgaaagtcacacagggatcctgagacgactg 425
Query: 408 gacacctcgctgggaacagctcgcacggaggttgtctgcaagcagtgcgaagctcacctt 467
||||| || | ||| |||||| |||||| |||||||||||||| ||||||||||||
Sbjct: 426 gacacttccttaggatgtcctcgcatggaggtggtctgcaagcagtgtgaagctcacctt 485
Query: 468 ggccatgtgtttcctgatggacctgggcctacaggtcagaggttttgcatcaacagtgtg 527
||||||||||||||||||||||| ||| || || || |||||||||||||||||||||
Sbjct: 486 ggccatgtgtttcctgatggacccaagcccactggccaaaggttttgcatcaacagtgtg 545
Query: 528 gcactcaagttcaaacc 544
|| || |||||||||||
Sbjct: 546 gccctgaagttcaaacc 562
>gnl|UG|Ssc#S6075443 UNL-P-FN-cu-b-04-0-UNL.s1 UNL-P-FN Sus scrofa
cDNA clone UNL-P-FN-cu-b-04-0-UNL 3', mRNA sequence
/clone=UNL-P-FN-cu-b-04-0-UNL /clone_end=3' /gb=BI185322
/gi=14659731 /ug=Ssc.11418 /len=734
Length = 734
Score = 248 bits (125), Expect = 4e-64
Identities = 125/125 (100%)
Strand = Plus / Plus
Query: 3 agcgtcatggcgcgcttcttccgcgcgggcccgggcttacccttccgagaggtgctctcg 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53 agcgtcatggcgcgcttcttccgcgcgggcccgggcttacccttccgagaggtgctctcg 112
Query: 63 cgggcagtgtggggtcgtgccgacaatggcggcctcagcccgaaggtcggaaccggagac 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 cgggcagtgtggggtcgtgccgacaatggcggcctcagcccgaaggtcggaaccggagac 172
Query: 123 gcagg 127
|||||
Sbjct: 173 gcagg 177
>gnl|UG|Bt#S21681658 BovGen_19110 normal cattle brain Bos taurus
cDNA clone RZPDp1056B2448Q 5', mRNA sequence
/clone=RZPDp1056B2448Q /clone_end=5' /gb=CO890785
/gi=51821076 /ug=Bt.10925 /len=699
Length = 699
Score = 83.8 bits (42), Expect = 1e-14
Identities = 115/138 (83%), Gaps = 1/138 (0%)
Strand = Plus / Plus
Query: 671 accttctctaattcattacctggagtcagctccaccctggctctggctctggctagaatt 730
||||||||| ||| | |||||||||||| ||| |||||||||||||| || ||||||||
Sbjct: 245 accttctctgatttactacctggagtcaactcagccctggctctggctttgactagaatt 304
Query: 731 tcacggaatgacagaggggcagtcctttcc-cttaatcaacatctgtgggctttgccagg 789
|||| |||||||||||| | ||||| || ||| || ||||||||||||||| ||
Sbjct: 305 tcacaaaatgacagagggaaaactgtttccactaaattgacttctgtgggctttgcctgg 364
Query: 790 accagagggcatgactct 807
|||||||| |||||||||
Sbjct: 365 accagaggacatgactct 382
>gnl|UG|Hs#S1799743 UI-H-BI3-alk-f-07-0-UI.s1 NCI_CGAP_Sub5 Homo
sapiens cDNA clone IMAGE:2737284 3', mRNA sequence
/clone=IMAGE:2737284 /clone_end=3' /gb=AW451838
/gi=6992614 /ti=154083454 /ug=Hs.437616 /len=702
Length = 702
Score = 38.2 bits (19), Expect = 0.64
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 403 gtgtggacacctcgctggg 421
|||||||||||||||||||
Sbjct: 358 gtgtggacacctcgctggg 376
>gnl|UG|Mm#S18928515 Mus musculus PAX interacting (with
transcription-activation domain) protein 1, mRNA (cDNA
clone MGC:90057 IMAGE:5704566), complete cds
/cds=p(61,3231) /gb=BC066014 /gi=41946079 /ug=Mm.277190
/len=5073
Length = 5073
Score = 38.2 bits (19), Expect = 0.64
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 174 aagaagctgactccagagc 192
|||||||||||||||||||
Sbjct: 2596 aagaagctgactccagagc 2614
>gnl|UG|Hs#S14272981 Homo sapiens, clone IMAGE:5296120, mRNA
/gb=BC046635 /gi=28302150 /ug=Hs.539723 /len=1208
Length = 1208
Score = 36.2 bits (18), Expect = 2.5
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 708 tggctctggctctggcta 725
||||||||||||||||||
Sbjct: 81 tggctctggctctggcta 98
>gnl|UG|Hs#S4631359 Homo sapiens transglutaminase 1 (K polypeptide
epidermal type I,
protein-glutamine-gamma-glutamyltransferase), mRNA (cDNA
clone MGC:21358 IMAGE:4747045), complete cds
/cds=p(76,2529) /gb=BC034699 /gi=21961602 /ug=Hs.508950
/len=2759
Length = 2759
Score = 36.2 bits (18), Expect = 2.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 707 ctggctctggctctggct 724
||||||||||||||||||
Sbjct: 169 ctggctctggctctggct 152
>gnl|UG|Hs#S1824536 Homo sapiens sperm associated antigen 8 (SPAG8),
transcript variant 1, mRNA /cds=p(116,1396)
/gb=NM_012436 /gi=27502371 /ug=Hs.256747 /len=2744
Length = 2744
Score = 36.2 bits (18), Expect = 2.5
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 705 ccctggctctggctctgg 722
||||||||||||||||||
Sbjct: 619 ccctggctctggctctgg 636
Score = 34.2 bits (17), Expect = 10.0
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 708 tggctctggctctggct 724
|||||||||||||||||
Sbjct: 580 tggctctggctctggct 596
>gnl|UG|Hs#S11148146 BX117325 Soares_testis_NHT Homo sapiens cDNA
clone IMAGp998M123517, mRNA sequence
/clone=IMAGp998M123517_;_IMAGE:1392947 /gb=BX117325
/gi=27880895 /ug=Hs.179724 /len=536
Length = 536
Score = 36.2 bits (18), Expect = 2.5
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 773 ctgtgggctttgccagga 790
||||||||||||||||||
Sbjct: 63 ctgtgggctttgccagga 80
Database: UniGene(Bt+Hs+Ssc+Mm)
Posted date: Mar 18, 2005 8:01 PM
Number of letters in database: 222,131,506
Number of sequences in database: 151,043
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 911
length of database: 222,131,506
effective HSP length: 19
effective length of query: 892
effective length of database: 219,261,689
effective search space: 195581426588
effective search space used: 195581426588
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)