Search to UniGene2 database
Query= 20050322S-011922 (20050322S-011922) 20050322S-011922
(1173 letters)
Database: UniGene(Bt+Hs+Ssc+Mm)
151,043 sequences; 222,131,506 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gnl|UG|Hs#S3989649 Homo sapiens cDNA FLJ32003 fis, clone NT2RP70... 258 5e-67
Alignment gnl|UG|Mm#S11102429 Mus musculus tropomyosin 4, mRNA (cDNA clone... 161 8e-38
Alignment gnl|UG|Hs#S4698765 AGENCOURT_8869073 Lupski_sciatic_nerve Homo s... 66 4e-09
Alignment gnl|UG|Hs#S4692645 AGENCOURT_8878109 Lupski_sciatic_nerve Homo s... 66 4e-09
Alignment gnl|UG|Ssc#S18290017 BP141742 full-length enriched swine cDNA li... 66 4e-09
Alignment gnl|UG|Mm#S10833593 Mus musculus 2 days neonate thymus thymic ce... 52 5e-05
Alignment gnl|UG|Hs#S16818710 Homo sapiens mRNA; cDNA DKFZp686P2151 (from ... 50 2e-04
Alignment gnl|UG|Hs#S21591274 PREDICTED: Homo sapiens similar to tropomyos... 50 2e-04
Alignment gnl|UG|Hs#S18961656 PREDICTED: Homo sapiens DKFZP586K1520 protei... 40 0.21
Alignment gnl|UG|Hs#S1090679 Homo sapiens protein kinase/endoribonulcease ... 40 0.21
>gnl|UG|Hs#S3989649 Homo sapiens cDNA FLJ32003 fis, clone
NT2RP7009397 /gb=AK056565 /gi=16552003 /ug=Hs.466088
/len=3108
Length = 3108
Score = 258 bits (130), Expect = 5e-67
Identities = 204/227 (89%), Gaps = 5/227 (2%)
Strand = Plus / Minus
Query: 6 gggggccggggcgcggctgctgcagctcttgcaagagcagagccgagccgagcgcccgcc 65
||||||||||||||||||| ||||||||| || |||| ||||| ||||||||| |||||
Sbjct: 920 gggggccggggcgcggctg-tgcagctctcgccggagccgagcccagccgagcgtccgcc 862
Query: 66 gctgcccgccgcccgctgcgtgcgcctccgcgccatggctggcctcaactccctggaggc 125
|||||||| || ||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 861 gctgcccgtgcgcctctgcg----cctccgcgccatggccggcctcaactccctggaggc 806
Query: 126 ggtgaaacgcaagatccaggtcctgcagcagcaggcggacgaggcagaagatcgcgcgca 185
|||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||
Sbjct: 805 ggtgaaacgcaagatccaggccctgcagcagcaggcggacgaggcggaagaccgcgcgca 746
Query: 186 cggcctgcaccgggagctggacggcgagcgcgagcggcgtgagaaag 232
|||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 745 gggcctgcagcgggagctggacggcgagcgcgagcggcgcgagaaag 699
>gnl|UG|Mm#S11102429 Mus musculus tropomyosin 4, mRNA (cDNA clone
MGC:38384 IMAGE:5345587), complete cds /cds=p(38,784)
/gb=BC023701 /gi=23958443 /ug=Mm.295124 /len=2118
Length = 2118
Score = 161 bits (81), Expect = 8e-38
Identities = 150/173 (86%)
Strand = Plus / Plus
Query: 100 atggctggcctcaactccctggaggcggtgaaacgcaagatccaggtcctgcagcagcag 159
||||| ||||||||||| |||||||| ||||| ||||||||||||| |||||||||||||
Sbjct: 38 atggccggcctcaactcactggaggcagtgaagcgcaagatccaggccctgcagcagcag 97
Query: 160 gcggacgaggcagaagatcgcgcgcacggcctgcaccgggagctggacggcgagcgcgag 219
|| ||||| ||||| ||||||||||| |||||||| || || ||||| ||||||||||||
Sbjct: 98 gcagacgacgcagaggatcgcgcgcaaggcctgcagcgcgaactggatggcgagcgcgag 157
Query: 220 cggcgtgagaaagccgaaagggaagtagcacctctcactcgccgcatccaact 272
||||| |||||||| ||| | || | ||| |||||| ||||||||||||||
Sbjct: 158 cggcgcgagaaagctgaaggagatgcagccgctctcaaccgccgcatccaact 210
>gnl|UG|Hs#S4698765 AGENCOURT_8869073 Lupski_sciatic_nerve Homo
sapiens cDNA clone IMAGE:6203910 5', mRNA sequence
/clone=IMAGE:6203910 /clone_end=5' /gb=BQ933569
/gi=22348952 /ti=141977972 /ug=Hs.548530 /len=907
Length = 907
Score = 65.9 bits (33), Expect = 4e-09
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 121 gaggcggtgaaacgcaagatccaggtcctgcagcagcaggc 161
||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 160 gaggcggtgaagcgcaagatccaggttctgcagcagcaggc 200
>gnl|UG|Hs#S4692645 AGENCOURT_8878109 Lupski_sciatic_nerve Homo
sapiens cDNA clone IMAGE:6198452 5', mRNA sequence
/clone=IMAGE:6198452 /clone_end=5' /gb=BQ923738
/gi=22338769 /ti=142933280 /ug=Hs.535581 /len=1295
Length = 1295
Score = 65.9 bits (33), Expect = 4e-09
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 121 gaggcggtgaaacgcaagatccaggtcctgcagcagcaggc 161
||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 164 gaggcggtgaagcgcaagatccaggttctgcagcagcaggc 204
>gnl|UG|Ssc#S18290017 BP141742 full-length enriched swine cDNA
library, adult ovary Sus scrofa cDNA clone OVR010020B02
5', mRNA sequence /clone=OVR010020B02 /clone_end=5'
/gb=BP141742 /gi=40391213 /ug=Ssc.1829 /len=955
Length = 955
Score = 65.9 bits (33), Expect = 4e-09
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 121 gaggcggtgaaacgcaagatccaggtcctgcagcagcaggc 161
||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 89 gaggcggtgaagcgcaagatccaggttctgcagcagcaggc 129
>gnl|UG|Mm#S10833593 Mus musculus 2 days neonate thymus thymic cells
cDNA, RIKEN full-length enriched library,
clone:E430030N07 product:tropomyosin 3, gamma, full
insert sequence /cds=p(70,816) /gb=AK088902 /gi=26354025
/ug=Mm.240839 /len=2096
Length = 2096
Score = 52.0 bits (26), Expect = 5e-05
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 121 gaggcggtgaaacgcaagatccaggtcctgcagcagca 158
|||||||| || |||||||||||||| |||||||||||
Sbjct: 91 gaggcggtaaagcgcaagatccaggttctgcagcagca 128
>gnl|UG|Hs#S16818710 Homo sapiens mRNA; cDNA DKFZp686P2151 (from
clone DKFZp686P2151) /gb=BX647962 /gi=34367121
/ug=Hs.433293 /len=2940
Length = 2940
Score = 50.1 bits (25), Expect = 2e-04
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 121 gaggcggtgaaacgcaagatccaggtcctgcagcagcaggc 161
||||| ||||| |||||||||||||| |||||||| |||||
Sbjct: 131 gaggcagtgaagcgcaagatccaggttctgcagcaccaggc 171
>gnl|UG|Hs#S21591274 PREDICTED: Homo sapiens similar to tropomyosin
3 (LOC440939), mRNA /cds=p(1,630) /gb=XM_496620
/gi=51460978 /ug=Hs.314296 /len=1061
Length = 1061
Score = 50.1 bits (25), Expect = 2e-04
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 121 gaggcggtgaaacgcaagatccaggtcctgcagcagcaggc 161
||||| ||||| ||||||||||||| ||||||||||||||
Sbjct: 319 gaggcagtgaagtgcaagatccaggttctgcagcagcaggc 359
>gnl|UG|Hs#S18961656 PREDICTED: Homo sapiens DKFZP586K1520 protein
(DKFZP586K1520), mRNA /cds=p(1,732) /gb=XM_376189
/gi=51460849 /ug=Hs.516864 /len=2694
Length = 2694
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 202 ctggacggcgagcgcgagcg 221
||||||||||||||||||||
Sbjct: 360 ctggacggcgagcgcgagcg 379
>gnl|UG|Hs#S1090679 Homo sapiens protein kinase/endoribonulcease
(IRE1) mRNA, complete cds /cds=p(97,3030) /gb=AF059198
/gi=3300093 /ug=Hs.133982 /len=3629
Length = 3629
Score = 40.1 bits (20), Expect = 0.21
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 136 aagatccaggtcctgcagcagcag 159
||||||||| ||||||||||||||
Sbjct: 1549 aagatccagctcctgcagcagcag 1572
Database: UniGene(Bt+Hs+Ssc+Mm)
Posted date: Mar 18, 2005 8:01 PM
Number of letters in database: 222,131,506
Number of sequences in database: 151,043
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 1173
length of database: 222,131,506
effective HSP length: 19
effective length of query: 1154
effective length of database: 219,261,689
effective search space: 253027989106
effective search space used: 253027989106
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)