Search to UniGene2 database
Query= 20050322S-014982 (20050322S-014982) 20050322S-014982
(748 letters)
Database: UniGene(Bt+Hs+Ssc+Mm)
151,043 sequences; 222,131,506 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gnl|UG|Hs#S21311480 full-length cDNA clone CS0DK002YI10 of HeLa ... 178 2e-43
Alignment gnl|UG|Ssc#S18260562 BP157053 full-length enriched swine cDNA li... 141 5e-32
Alignment gnl|UG|Hs#S3989649 Homo sapiens cDNA FLJ32003 fis, clone NT2RP70... 131 5e-29
Alignment gnl|UG|Mm#S7114452 Mouse skeletal muscle beta tropomyosin mRNA, ... 117 7e-25
Alignment gnl|UG|Hs#S7112518 PREDICTED: Homo sapiens similar to tropomyosi... 107 7e-22
Alignment gnl|UG|Bt#S22877747 Bos taurus TPM3 mRNA for tropomyosin 3, comp... 98 7e-19
Alignment gnl|UG|Mm#S9085693 Mus musculus 18-day embryo whole body cDNA, R... 94 1e-17
Alignment gnl|UG|Ssc#S6089598 Z98799 pT7T318U Sus scrofa domestica cDNA cl... 94 1e-17
Alignment gnl|UG|Bt#S11975653 6664 MARC BSM Bos taurus cDNA 5', mRNA seque... 66 2e-09
Alignment gnl|UG|Mm#S11102429 Mus musculus tropomyosin 4, mRNA (cDNA clone... 64 9e-09
>gnl|UG|Hs#S21311480 full-length cDNA clone CS0DK002YI10 of HeLa
cells Cot 25-normalized of Homo sapiens (human)
/gb=CR590682 /gi=50471489 /ug=Hs.300772 /len=1735
Length = 1735
Score = 178 bits (90), Expect = 2e-43
Identities = 156/178 (87%)
Strand = Plus / Plus
Query: 62 cagccatggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaacgcca 121
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90 cagccatggacgccatcaagaagaagatgcagatgctgaagctggacaaggagaacgcca 149
Query: 122 tcgaccgggccgagcaggcggagtcggataagaaagctgctgaggagaagtgcaagcagg 181
||||||| ||||||||||| || | || ||||| |||||||| |||||||||
Sbjct: 150 tcgaccgcgccgagcaggccgaagccgacaagaagcaagctgaggaccgctgcaagcagc 209
Query: 182 tggaggaggagctgacgcacctccagaagaagctgaaggggacagaggatgagctgga 239
|||||||||||| | | |||||||||||||||||||||||||||||||||| ||||
Sbjct: 210 tggaggaggagcagcaggccctccagaagaagctgaaggggacagaggatgaggtgga 267
Score = 71.9 bits (36), Expect = 4e-11
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 349 gttgaggaggagttggacagggctcaggaacgactggccacagccctgcagaagcttgag 408
|||||||||||| ||||| |||| ||||| || ||||| ||||||||||||||||| |||
Sbjct: 377 gttgaggaggagctggaccgggcccaggagcgcctggctacagccctgcagaagctggag 436
Query: 409 gagg 412
||||
Sbjct: 437 gagg 440
>gnl|UG|Ssc#S18260562 BP157053 full-length enriched swine cDNA
library, adult spleen Sus scrofa cDNA clone SPL010009B03
5', mRNA sequence /clone=SPL010009B03 /clone_end=5'
/gb=BP157053 /gi=40406526 /ug=Ssc.20571 /len=893
Length = 893
Score = 141 bits (71), Expect = 5e-32
Identities = 149/175 (85%)
Strand = Plus / Plus
Query: 65 ccatggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaacgccatcg 124
||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 107 ccatggatgccatcaagaagaagatgcagatgctaaagctggacaaggagaatgccatcg 166
Query: 125 accgggccgagcaggcggagtcggataagaaagctgctgaggagaagtgcaagcaggtgg 184
|||| || |||||||||||| | || ||||| ||||| || ||||||||| |||
Sbjct: 167 accgtgctgagcaggcggaggctgacaagaagcaggctgaagaccgctgcaagcagctgg 226
Query: 185 aggaggagctgacgcacctccagaagaagctgaaggggacagaggatgagctgga 239
||||||||| | | |||||||||||||||||| ||||| ||||||||| ||||
Sbjct: 227 aggaggagcagcaggccctccagaagaagctgaaagggacggaggatgaggtgga 281
Score = 65.9 bits (33), Expect = 2e-09
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 352 gaggaggagttggacagggctcaggaacgactggccacagccctgcagaagcttgaggag 411
||||||||| ||||| |||| ||||| || ||||||||||||||||| ||||| ||||||
Sbjct: 394 gaggaggagctggaccgggcgcaggagcgtctggccacagccctgcaaaagctggaggag 453
Query: 412 g 412
|
Sbjct: 454 g 454
>gnl|UG|Hs#S3989649 Homo sapiens cDNA FLJ32003 fis, clone NT2RP7009397
/gb=AK056565 /gi=16552003 /ug=Hs.466088 /len=3108
Length = 3108
Score = 131 bits (66), Expect = 5e-29
Identities = 114/130 (87%)
Strand = Plus / Minus
Query: 178 caggtggaggaggagctgacgcacctccagaagaagctgaaggggacagaggatgagctg 237
||||||||||||||||||||||||||||||||||| || || ||||||||||| ||||||
Sbjct: 1353 caggtggaggaggagctgacgcacctccagaagaaactaaaagggacagaggacgagctg 1294
Query: 238 gacaaatacttccagaacctgaaggacgcgcaggaaaagctggagttgagcaagaagaaa 297
|| ||||| | | || ||||||||||||||||||| ||||||||| | | |||||||
Sbjct: 1293 gataaatattccgaggacctgaaggacgcgcaggagaagctggagctcacggagaagaag 1234
Query: 298 gcctccgacg 307
||||||||||
Sbjct: 1233 gcctccgacg 1224
>gnl|UG|Mm#S7114452 Mouse skeletal muscle beta tropomyosin mRNA,
complete cds. /cds=p(35,889) /gb=M81086 /gi=202162
/ug=Mm.646 /len=2097
Length = 2097
Score = 117 bits (59), Expect = 7e-25
Identities = 74/79 (93%)
Strand = Plus / Plus
Query: 62 cagccatggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaacgcca 121
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 30 cagccatggacgccatcaagaagaagatgcagatgctgaaactggacaaggagaatgcca 89
Query: 122 tcgaccgggccgagcaggc 140
||||||| || ||||||||
Sbjct: 90 tcgaccgcgcggagcaggc 108
Score = 81.8 bits (41), Expect = 4e-14
Identities = 191/241 (79%)
Strand = Plus / Plus
Query: 172 tgcaagcaggtggaggaggagctgacgcacctccagaagaagctgaaggggacagaggat 231
||||||||| ||||||| |||| | | ||||||||||||||||||||||||||||||
Sbjct: 140 tgcaagcagctggaggaagagcagcaggccctccagaagaagctgaaggggacagaggac 199
Query: 232 gagctggacaaatacttccagaacctgaaggacgcgcaggaaaagctggagttgagcaag 291
||| |||| || || | | || | ||||||| || ||||| || |||||| | ||
Sbjct: 200 gaggtggaaaagtattccgagtccgtgaaggatgcccaggagaaactggagcaggctgag 259
Query: 292 aagaaagcctccgacgccgaaggggatgtagcagctcttaatcggcgcatccaactcgtt 351
||||| ||| ||||||| |||| ||||| || |||| || || ||||| || |||||
Sbjct: 260 aagaaggccaccgacgctgaagcagatgtggcctctctgaaccgccgcattcagctcgta 319
Query: 352 gaggaggagttggacagggctcaggaacgactggccacagccctgcagaagcttgaggag 411
|||||||||||||| |||| ||||| || ||||| |||||| |||| ||||| ||||||
Sbjct: 320 gaggaggagttggatcgggcacaggagcgcctggctacagccttgcaaaagctggaggag 379
Query: 412 g 412
|
Sbjct: 380 g 380
>gnl|UG|Hs#S7112518 PREDICTED: Homo sapiens similar to tropomyosin 4
(LOC285321), mRNA /cds=p(283,759) /gb=XM_208313
/gi=51463928 /ug=Hs.449194 /len=1364
Length = 1364
Score = 107 bits (54), Expect = 7e-22
Identities = 75/82 (91%)
Strand = Plus / Plus
Query: 337 cgcatccaactcgttgaggaggagttggacagggctcaggaacgactggccacagccctg 396
|||||||| |||||||||||| |||||||||||||||||||| |||||||||| |||| |
Sbjct: 175 cgcatccagctcgttgaggagaagttggacagggctcaggaaagactggccacggccccg 234
Query: 397 cagaagcttgaggagggagaaa 418
|||||||| ||||||| |||||
Sbjct: 235 cagaagctggaggaggcagaaa 256
>gnl|UG|Bt#S22877747 Bos taurus TPM3 mRNA for tropomyosin 3,
complete cds /cds=p(54,908) /gb=AB198072 /gi=57281700
/ug=Bt.9448 /len=1106
Length = 1106
Score = 97.6 bits (49), Expect = 7e-19
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 67 atggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaacgc 119
||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 54 atggaggccatcaagaaaaagatgcagatgctgaagctggacaaggagaacgc 106
Score = 60.0 bits (30), Expect = 1e-07
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 205 cagaagaagctgaaggggacagaggatgagctggacaa 242
|||||||||||||| ||||||||||| |||||||||||
Sbjct: 192 cagaagaagctgaaagggacagaggacgagctggacaa 229
>gnl|UG|Mm#S9085693 Mus musculus 18-day embryo whole body cDNA,
RIKEN full-length enriched library, clone:1100001I18
product:tropomyosin 2, beta, full insert sequence
/cds=p(83,937) /gb=AK003175 /gi=12833676 /ug=Mm.121878
/len=1703
Length = 1703
Score = 93.7 bits (47), Expect = 1e-17
Identities = 80/91 (87%)
Strand = Plus / Plus
Query: 65 ccatggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaacgccatcg 124
||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||| | |
Sbjct: 81 ccatggacgccatcaagaagaagatgcagatgctgaagctcgacaaagagaacgccttgg 140
Query: 125 accgggccgagcaggcggagtcggataagaa 155
| || || ||||| |||||| | ||||||||
Sbjct: 141 atcgagctgagcaagcggaggctgataagaa 171
Score = 79.8 bits (40), Expect = 2e-13
Identities = 67/76 (88%)
Strand = Plus / Plus
Query: 337 cgcatccaactcgttgaggaggagttggacagggctcaggaacgactggccacagccctg 396
|||||||| || ||||||||||||||||| | |||||||| || ||||||||||| |||
Sbjct: 353 cgcatccagctggttgaggaggagttggatcgtgctcaggagcgtctggccacagctctg 412
Query: 397 cagaagcttgaggagg 412
|||||||| |||||||
Sbjct: 413 cagaagctggaggagg 428
>gnl|UG|Ssc#S6089598 Z98799 pT7T318U Sus scrofa domestica cDNA clone
pAZ3A08 similar to alpha tropomyosin, mRNA sequence
/clone=pAZ3A08 /gb=Z98799 /gi=5706072 /ug=Ssc.13956
/len=1054
Length = 1054
Score = 93.7 bits (47), Expect = 1e-17
Identities = 104/123 (84%)
Strand = Plus / Plus
Query: 73 gccatcaagaagaagatgcagatgctgaagctggacaaggagaacgccatcgaccgggcc 132
|||||||||||||||||||| ||||| ||||| ||||||||||||||| | || || ||
Sbjct: 3 gccatcaagaagaagatgcaaatgctcaagctcgacaaggagaacgccttggatcgagcg 62
Query: 133 gagcaggcggagtcggataagaaagctgctgaggagaagtgcaagcaggtggaggaggag 192
|||||||||||| | |||||||| || || ||||| | | |||||||| |||| || |||
Sbjct: 63 gagcaggcggaggccgataagaaggcggcagaggacaggagcaagcagctggaagatgag 122
Query: 193 ctg 195
|||
Sbjct: 123 ctg 125
Score = 56.0 bits (28), Expect = 2e-06
Identities = 64/76 (84%)
Strand = Plus / Plus
Query: 337 cgcatccaactcgttgaggaggagttggacagggctcaggaacgactggccacagccctg 396
||||||||||| |||||||| ||| ||||| | || ||||| |||||||| ||||| |
Sbjct: 267 cgcatccaactggttgaggaagagctggaccgtgcccaggagcgactggcaacagcttta 326
Query: 397 cagaagcttgaggagg 412
||||| ||||||||||
Sbjct: 327 cagaaacttgaggagg 342
>gnl|UG|Bt#S11975653 6664 MARC BSM Bos taurus cDNA 5', mRNA sequence
/clone_end=5' /gb=BF430381 /gi=11442478 /ti=480294234
/ug=Bt.12477 /len=1027
Length = 1027
Score = 65.9 bits (33), Expect = 2e-09
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 352 gaggaggagttggacagggctcaggaacgactggccacagccctgcagaagcttgaggag 411
||||||||| ||||| |||| ||||| || ||||| ||||||||||||||||| ||||||
Sbjct: 302 gaggaggagctggaccgggcacaggagcgtctggctacagccctgcagaagctggaggag 361
Query: 412 g 412
|
Sbjct: 362 g 362
>gnl|UG|Mm#S11102429 Mus musculus tropomyosin 4, mRNA (cDNA clone
MGC:38384 IMAGE:5345587), complete cds /cds=p(38,784)
/gb=BC023701 /gi=23958443 /ug=Mm.295124 /len=2118
Length = 2118
Score = 63.9 bits (32), Expect = 9e-09
Identities = 77/92 (83%)
Strand = Plus / Plus
Query: 310 gaaggggatgtagcagctcttaatcggcgcatccaactcgttgaggaggagttggacagg 369
||||| |||| ||| ||||| || || ||||||||||| | |||||||| ||||| ||
Sbjct: 173 gaaggagatgcagccgctctcaaccgccgcatccaactgctggaggaggaactggaccgg 232
Query: 370 gctcaggaacgactggccacagccctgcagaa 401
|||||||| | ||||||||||||||||||||
Sbjct: 233 gctcaggagcagctggccacagccctgcagaa 264
Database: UniGene(Bt+Hs+Ssc+Mm)
Posted date: Mar 18, 2005 8:01 PM
Number of letters in database: 222,131,506
Number of sequences in database: 151,043
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 748
length of database: 222,131,506
effective HSP length: 19
effective length of query: 729
effective length of database: 219,261,689
effective search space: 159841771281
effective search space used: 159841771281
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)