Search to UniGene2 database
Query= 20050322S-025939 (20050322S-025939) 20050322S-025939
(569 letters)
Database: UniGene(Bt+Hs+Ssc+Mm)
151,043 sequences; 222,131,506 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gnl|UG|Hs#S21311480 full-length cDNA clone CS0DK002YI10 of HeLa ... 163 1e-38
Alignment gnl|UG|Ssc#S18260562 BP157053 full-length enriched swine cDNA li... 125 2e-27
Alignment gnl|UG|Mm#S7114452 Mouse skeletal muscle beta tropomyosin mRNA, ... 117 5e-25
Alignment gnl|UG|Bt#S22877747 Bos taurus TPM3 mRNA for tropomyosin 3, comp... 98 5e-19
Alignment gnl|UG|Mm#S9085693 Mus musculus 18-day embryo whole body cDNA, R... 94 8e-18
Alignment gnl|UG|Hs#S3989649 Homo sapiens cDNA FLJ32003 fis, clone NT2RP70... 90 1e-16
Alignment gnl|UG|Ssc#S6089598 Z98799 pT7T318U Sus scrofa domestica cDNA cl... 88 5e-16
Alignment gnl|UG|Mm#S11102429 Mus musculus tropomyosin 4, mRNA (cDNA clone... 42 0.025
Alignment gnl|UG|Ssc#S18354236 893266 MARC 4PIG Sus scrofa cDNA 5', mRNA s... 40 0.100
Alignment gnl|UG|Bt#S12069908 Bos taurus attractin mRNA, complete cds /cds... 40 0.100
>gnl|UG|Hs#S21311480 full-length cDNA clone CS0DK002YI10 of HeLa
cells Cot 25-normalized of Homo sapiens (human)
/gb=CR590682 /gi=50471489 /ug=Hs.300772 /len=1735
Length = 1735
Score = 163 bits (82), Expect = 1e-38
Identities = 154/178 (86%)
Strand = Plus / Plus
Query: 62 cagccatggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaacgcca 121
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90 cagccatggacgccatcaagaagaagatgcagatgctgaagctggacaaggagaacgcca 149
Query: 122 tcgaccgggccgagcaggcggagtcggataagaaagctgctgaggagaagtgcaagcagg 181
||||||| ||||||||||| || | || ||||| |||||||| |||||||||
Sbjct: 150 tcgaccgcgccgagcaggccgaagccgacaagaagcaagctgaggaccgctgcaagcagc 209
Query: 182 tgggggaggagctgacgcacctccacaagaagctgaaggggacagaggatgagctgga 239
||| |||||||| | | |||||| ||||||||||||||||||||||||||| ||||
Sbjct: 210 tggaggaggagcagcaggccctccagaagaagctgaaggggacagaggatgaggtgga 267
>gnl|UG|Ssc#S18260562 BP157053 full-length enriched swine cDNA
library, adult spleen Sus scrofa cDNA clone SPL010009B03
5', mRNA sequence /clone=SPL010009B03 /clone_end=5'
/gb=BP157053 /gi=40406526 /ug=Ssc.20571 /len=893
Length = 893
Score = 125 bits (63), Expect = 2e-27
Identities = 147/175 (84%)
Strand = Plus / Plus
Query: 65 ccatggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaacgccatcg 124
||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 107 ccatggatgccatcaagaagaagatgcagatgctaaagctggacaaggagaatgccatcg 166
Query: 125 accgggccgagcaggcggagtcggataagaaagctgctgaggagaagtgcaagcaggtgg 184
|||| || |||||||||||| | || ||||| ||||| || ||||||||| |||
Sbjct: 167 accgtgctgagcaggcggaggctgacaagaagcaggctgaagaccgctgcaagcagctgg 226
Query: 185 gggaggagctgacgcacctccacaagaagctgaaggggacagaggatgagctgga 239
|||||||| | | |||||| ||||||||||| ||||| ||||||||| ||||
Sbjct: 227 aggaggagcagcaggccctccagaagaagctgaaagggacggaggatgaggtgga 281
>gnl|UG|Mm#S7114452 Mouse skeletal muscle beta tropomyosin mRNA,
complete cds. /cds=p(35,889) /gb=M81086 /gi=202162
/ug=Mm.646 /len=2097
Length = 2097
Score = 117 bits (59), Expect = 5e-25
Identities = 74/79 (93%)
Strand = Plus / Plus
Query: 62 cagccatggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaacgcca 121
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 30 cagccatggacgccatcaagaagaagatgcagatgctgaaactggacaaggagaatgcca 89
Query: 122 tcgaccgggccgagcaggc 140
||||||| || ||||||||
Sbjct: 90 tcgaccgcgcggagcaggc 108
Score = 54.0 bits (27), Expect = 7e-06
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 201 cctccacaagaagctgaaggggacagaggatgagctgga 239
|||||| ||||||||||||||||||||||| ||| ||||
Sbjct: 169 cctccagaagaagctgaaggggacagaggacgaggtgga 207
>gnl|UG|Bt#S22877747 Bos taurus TPM3 mRNA for tropomyosin 3,
complete cds /cds=p(54,908) /gb=AB198072 /gi=57281700
/ug=Bt.9448 /len=1106
Length = 1106
Score = 97.6 bits (49), Expect = 5e-19
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 67 atggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaacgc 119
||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 54 atggaggccatcaagaaaaagatgcagatgctgaagctggacaaggagaacgc 106
Score = 50.1 bits (25), Expect = 1e-04
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 208 aagaagctgaaggggacagaggatgagctggac 240
||||||||||| ||||||||||| |||||||||
Sbjct: 195 aagaagctgaaagggacagaggacgagctggac 227
>gnl|UG|Mm#S9085693 Mus musculus 18-day embryo whole body cDNA,
RIKEN full-length enriched library, clone:1100001I18
product:tropomyosin 2, beta, full insert sequence
/cds=p(83,937) /gb=AK003175 /gi=12833676 /ug=Mm.121878
/len=1703
Length = 1703
Score = 93.7 bits (47), Expect = 8e-18
Identities = 80/91 (87%)
Strand = Plus / Plus
Query: 65 ccatggaggccatcaagaagaagatgcagatgctgaagctggacaaggagaacgccatcg 124
||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||| | |
Sbjct: 81 ccatggacgccatcaagaagaagatgcagatgctgaagctcgacaaagagaacgccttgg 140
Query: 125 accgggccgagcaggcggagtcggataagaa 155
| || || ||||| |||||| | ||||||||
Sbjct: 141 atcgagctgagcaagcggaggctgataagaa 171
>gnl|UG|Hs#S3989649 Homo sapiens cDNA FLJ32003 fis, clone NT2RP7009397
/gb=AK056565 /gi=16552003 /ug=Hs.466088 /len=3108
Length = 3108
Score = 89.7 bits (45), Expect = 1e-16
Identities = 90/105 (85%)
Strand = Plus / Minus
Query: 178 caggtgggggaggagctgacgcacctccacaagaagctgaaggggacagaggatgagctg 237
||||||| ||||||||||||||||||||| ||||| || || ||||||||||| ||||||
Sbjct: 1353 caggtggaggaggagctgacgcacctccagaagaaactaaaagggacagaggacgagctg 1294
Query: 238 gacctatactccgaaaacctgaaggacgcgcaagagtaactggag 282
|| ||| ||||| |||||||||||||||| ||| | ||||||
Sbjct: 1293 gataaatattccgaggacctgaaggacgcgcaggagaagctggag 1249
>gnl|UG|Ssc#S6089598 Z98799 pT7T318U Sus scrofa domestica cDNA clone
pAZ3A08 similar to alpha tropomyosin, mRNA sequence
/clone=pAZ3A08 /gb=Z98799 /gi=5706072 /ug=Ssc.13956
/len=1054
Length = 1054
Score = 87.7 bits (44), Expect = 5e-16
Identities = 92/108 (85%)
Strand = Plus / Plus
Query: 73 gccatcaagaagaagatgcagatgctgaagctggacaaggagaacgccatcgaccgggcc 132
|||||||||||||||||||| ||||| ||||| ||||||||||||||| | || || ||
Sbjct: 3 gccatcaagaagaagatgcaaatgctcaagctcgacaaggagaacgccttggatcgagcg 62
Query: 133 gagcaggcggagtcggataagaaagctgctgaggagaagtgcaagcag 180
|||||||||||| | |||||||| || || ||||| | | ||||||||
Sbjct: 63 gagcaggcggaggccgataagaaggcggcagaggacaggagcaagcag 110
>gnl|UG|Mm#S11102429 Mus musculus tropomyosin 4, mRNA (cDNA clone
MGC:38384 IMAGE:5345587), complete cds /cds=p(38,784)
/gb=BC023701 /gi=23958443 /ug=Mm.295124 /len=2118
Length = 2118
Score = 42.1 bits (21), Expect = 0.025
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 386 ccacagccctgcctaatctcgaagaggcagaacaggctgcagatg 430
|||||||||||| ||||| ||||||||||| ||||||| ||||
Sbjct: 249 ccacagccctgcagaatctggaagaggcagagaaggctgctgatg 293
>gnl|UG|Ssc#S18354236 893266 MARC 4PIG Sus scrofa cDNA 5', mRNA
sequence /clone_end=5' /gb=CK449677 /gi=40796891
/ug=Ssc.21725 /len=791
Length = 791
Score = 40.1 bits (20), Expect = 0.100
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 270 agagtaactggagttgagct 289
||||||||||||||||||||
Sbjct: 186 agagtaactggagttgagct 205
>gnl|UG|Bt#S12069908 Bos taurus attractin mRNA, complete cds
/cds=p(52,4299) /gb=AF531101 /gi=22297307 /ug=Bt.12296
/len=4493
Length = 4493
Score = 40.1 bits (20), Expect = 0.100
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 3 cgactccgacgccgctgccgccgc 26
|||| |||||||||||||||||||
Sbjct: 285 cgacaccgacgccgctgccgccgc 262
Database: UniGene(Bt+Hs+Ssc+Mm)
Posted date: Mar 18, 2005 8:01 PM
Number of letters in database: 222,131,506
Number of sequences in database: 151,043
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 569
length of database: 222,131,506
effective HSP length: 19
effective length of query: 550
effective length of database: 219,261,689
effective search space: 120593928950
effective search space used: 120593928950
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)