Search to UniGene2 database
Query= 20050322S-026956 (20050322S-026956) 20050322S-026956
(736 letters)
Database: UniGene(Bt+Hs+Ssc+Mm)
151,043 sequences; 222,131,506 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gnl|UG|Hs#S21592350 Homo sapiens mRNA; cDNA DKFZp781K1852 (from ... 212 2e-53
Alignment gnl|UG|Mm#S21075759 Mus musculus RIKEN cDNA 3000002B06 gene, mRN... 174 3e-42
Alignment gnl|UG|Mm#S14814373 Mus musculus mRNA for mKIAA1781 protein /cds... 52 3e-05
Alignment gnl|UG|Hs#S15730159 Homo sapiens lipoma HMGIC fusion partner-lik... 42 0.033
Alignment gnl|UG|Hs#S1727312 Homo sapiens phosphodiesterase 1B, calmodulin... 40 0.13
Alignment gnl|UG|Hs#S3603098 Homo sapiens mRNA for MEGF11 protein (KIAA178... 40 0.13
Alignment gnl|UG|Hs#S16886613 Homo sapiens cDNA FLJ44103 fis, clone TESTI4... 38 0.51
Alignment gnl|UG|Hs#S5979107 Homo sapiens sialyltransferase 7 ((alpha-N-ac... 38 0.51
Alignment gnl|UG|Mm#S16443426 maj08b05.y1 McCarrey Eddy round spermatid Mu... 38 0.51
Alignment gnl|UG|Mm#S11069803 Mus musculus beta-1,3-glucuronyltransferase ... 38 0.51
>gnl|UG|Hs#S21592350 Homo sapiens mRNA; cDNA DKFZp781K1852 (from clone
DKFZp781K1852) /cds=p(246,3668) /gb=CR749437 /gi=51476584
/ug=Hs.438709 /len=7582
Length = 7582
Score = 212 bits (107), Expect = 2e-53
Identities = 137/147 (93%)
Strand = Plus / Plus
Query: 325 tcaggtgtccactgtgacagcgtgtgtgctgagggtcgctggggccccaactgctccctg 384
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1935 tcaggtgtccactgtgacagcgtgtgtgctgagggacgctggggccccaactgctccctg 1994
Query: 385 ccctgctactgtaaaaacggggcttcgtgctccccggatgacggcatctgtgagtgtgca 444
||||||||||||||||| |||||||| |||||||| || || |||||||| |||||||||
Sbjct: 1995 ccctgctactgtaaaaatggggcttcatgctcccctgacgatggcatctgcgagtgtgca 2054
Query: 445 ccggggttccgaggcaccacctgtcag 471
|| || |||||||||||||| ||||||
Sbjct: 2055 ccaggcttccgaggcaccacttgtcag 2081
>gnl|UG|Mm#S21075759 Mus musculus RIKEN cDNA 3000002B06 gene, mRNA
(cDNA clone MGC:100091 IMAGE:30620548), complete cds
/cds=p(274,3717) /gb=BC075647 /gi=49523318 /ug=Mm.297863
/len=7148
Length = 7148
Score = 174 bits (88), Expect = 3e-42
Identities = 127/140 (90%)
Strand = Plus / Plus
Query: 325 tcaggtgtccactgtgacagcgtgtgtgctgagggtcgctggggccccaactgctccctg 384
|||||||| ||||||||||| ||||| |||||||| |||||||| || |||||||| |||
Sbjct: 1963 tcaggtgtgcactgtgacagtgtgtgcgctgagggacgctggggtcctaactgctcgctg 2022
Query: 385 ccctgctactgtaaaaacggggcttcgtgctccccggatgacggcatctgtgagtgtgca 444
||||||||||||||||| ||||||||||| || |||||||| ||||||||||||||||||
Sbjct: 2023 ccctgctactgtaaaaatggggcttcgtgttctccggatgatggcatctgtgagtgtgca 2082
Query: 445 ccggggttccgaggcaccac 464
|| || ||||||||||||||
Sbjct: 2083 cccggattccgaggcaccac 2102
>gnl|UG|Mm#S14814373 Mus musculus mRNA for mKIAA1781 protein
/cds=p(1,3425) /gb=AK122555 /gi=49022875 /ug=Mm.127721
/len=6680
Length = 6680
Score = 52.0 bits (26), Expect = 3e-05
Identities = 71/86 (82%)
Strand = Plus / Plus
Query: 358 ggtcgctggggccccaactgctccctgccctgctactgtaaaaacggggcttcgtgctcc 417
|||||||||||||||||||| || || ||||| |||| | ||||| | ||| ||||||
Sbjct: 1851 ggtcgctggggccccaactgttcagtgtcctgcagctgtgagaacggaggttcctgctcc 1910
Query: 418 ccggatgacggcatctgtgagtgtgc 443
||||| ||||| | ||| ||||||||
Sbjct: 1911 ccggaggacgggagctgcgagtgtgc 1936
>gnl|UG|Hs#S15730159 Homo sapiens lipoma HMGIC fusion partner-like
protein 4 mRNA, complete cds /cds=p(287,1030)
/gb=AY278320 /gi=30908797 /ug=Hs.331437 /len=1444
Length = 1444
Score = 42.1 bits (21), Expect = 0.033
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 20 cccttgggcttctcctctgctctct 44
|||||||||||||||||| ||||||
Sbjct: 1288 cccttgggcttctcctctcctctct 1312
>gnl|UG|Hs#S1727312 Homo sapiens phosphodiesterase 1B,
calmodulin-dependent (PDE1B), mRNA /cds=p(167,1777)
/gb=NM_000924 /gi=24431942 /ug=Hs.530871 /len=3236
Length = 3236
Score = 40.1 bits (20), Expect = 0.13
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 22 cttgggcttctcctctgctc 41
||||||||||||||||||||
Sbjct: 529 cttgggcttctcctctgctc 510
>gnl|UG|Hs#S3603098 Homo sapiens mRNA for MEGF11 protein (KIAA1781),
complete cds. /cds=p(160,3069) /gb=AB058677 /gi=14017778
/ug=Hs.438250 /len=5702
Length = 5702
Score = 40.1 bits (20), Expect = 0.13
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 361 cgctggggccccaactgctc 380
||||||||||||||||||||
Sbjct: 1642 cgctggggccccaactgctc 1661
>gnl|UG|Hs#S16886613 Homo sapiens cDNA FLJ44103 fis, clone
TESTI4044084 /cds=p(6,491) /gb=AK126091 /gi=34532456
/ug=Hs.539849 /len=3103
Length = 3103
Score = 38.2 bits (19), Expect = 0.51
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 401 acggggcttcgtgctcccc 419
|||||||||||||||||||
Sbjct: 425 acggggcttcgtgctcccc 407
>gnl|UG|Hs#S5979107 Homo sapiens sialyltransferase 7
((alpha-N-acetylneuraminyl-2,3-beta-galactosyl-1,
3)-N-acetyl galactosaminide alpha-2,6-sialyltransferase)
B, mRNA (cDNA clone IMAGE:5260671), with apparent
retained intron /gb=BC038114 /gi=23958662 /ug=Hs.281434
/len=5645
Length = 5645
Score = 38.2 bits (19), Expect = 0.51
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 371 ccaactgctccctgccctg 389
|||||||||||||||||||
Sbjct: 2445 ccaactgctccctgccctg 2427
>gnl|UG|Mm#S16443426 maj08b05.y1 McCarrey Eddy round spermatid Mus
musculus cDNA clone IMAGE:6940930 5', mRNA sequence
/clone=IMAGE:6940930 /clone_end=5' /gb=CF105721
/gi=33144788 /ug=Mm.312824 /len=596
Length = 596
Score = 38.2 bits (19), Expect = 0.51
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 528 tctgcccctcaattcacag 546
|||||||||||||||||||
Sbjct: 52 tctgcccctcaattcacag 70
>gnl|UG|Mm#S11069803 Mus musculus beta-1,3-glucuronyltransferase 2
(glucuronosyltransferase S) (B3gat2), mRNA
/cds=p(710,1684) /gb=NM_172124 /gi=46909608 /ug=Mm.262803
/len=4367
Length = 4367
Score = 38.2 bits (19), Expect = 0.51
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 497 agcttccatcttcccttct 515
|||||||||||||||||||
Sbjct: 3761 agcttccatcttcccttct 3779
Database: UniGene(Bt+Hs+Ssc+Mm)
Posted date: Mar 18, 2005 8:01 PM
Number of letters in database: 222,131,506
Number of sequences in database: 151,043
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 736
length of database: 222,131,506
effective HSP length: 19
effective length of query: 717
effective length of database: 219,261,689
effective search space: 157210631013
effective search space used: 157210631013
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)