Search to UniGene2 database
Query= 20050322S-027028 (20050322S-027028) 20050322S-027028
(365 letters)
Database: UniGene(Bt+Hs+Ssc+Mm)
151,043 sequences; 222,131,506 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gnl|UG|Hs#S3989649 Homo sapiens cDNA FLJ32003 fis, clone NT2RP70... 176 4e-43
Alignment gnl|UG|Mm#S11102429 Mus musculus tropomyosin 4, mRNA (cDNA clone... 145 1e-33
Alignment gnl|UG|Hs#S4698765 AGENCOURT_8869073 Lupski_sciatic_nerve Homo s... 56 1e-06
Alignment gnl|UG|Hs#S4692645 AGENCOURT_8878109 Lupski_sciatic_nerve Homo s... 56 1e-06
Alignment gnl|UG|Ssc#S18290017 BP141742 full-length enriched swine cDNA li... 56 1e-06
Alignment gnl|UG|Hs#S21591274 PREDICTED: Homo sapiens similar to tropomyos... 46 0.001
Alignment gnl|UG|Hs#S3217854 Homo sapiens mRNA for xylosyltransferase II (... 40 0.063
Alignment gnl|UG|Hs#S16818710 Homo sapiens mRNA; cDNA DKFZp686P2151 (from ... 40 0.063
Alignment gnl|UG|Hs#S4810110 PREDICTED: Homo sapiens similar to CDRT15 pro... 38 0.25
Alignment gnl|UG|Hs#S15638196 Homo sapiens transmembrane and coiled-coil d... 36 0.98
>gnl|UG|Hs#S3989649 Homo sapiens cDNA FLJ32003 fis, clone
NT2RP7009397 /gb=AK056565 /gi=16552003 /ug=Hs.466088
/len=3108
Length = 3108
Score = 176 bits (89), Expect = 4e-43
Identities = 122/133 (91%)
Strand = Plus / Minus
Query: 125 atggctggcctcaactccctggaggcggtgagacgcaagatccaggccctgcagcagcag 184
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 831 atggccggcctcaactccctggaggcggtgaaacgcaagatccaggccctgcagcagcag 772
Query: 185 gcggacgaggcagaggatctcgcgcacggcctgcagtgggagctggacggcgatcgcgag 244
||||||||||| || || | |||||| ||||||||| |||||||||||||||| ||||||
Sbjct: 771 gcggacgaggcggaagaccgcgcgcagggcctgcagcgggagctggacggcgagcgcgag 712
Query: 245 cggtgggagaaag 257
||| | |||||||
Sbjct: 711 cggcgcgagaaag 699
Score = 50.1 bits (25), Expect = 7e-05
Identities = 54/60 (90%), Gaps = 4/60 (6%)
Strand = Plus / Minus
Query: 1 ggggcggccccccggcgtaggcaaaggctcggggg-ccggggcgcggctgctgcagctct 59
|||||||||||| ||| ||||||||||| ||||| |||||||||||||| |||||||||
Sbjct: 949 ggggcggccccc--gcgcaggcaaaggcttggggggccggggcgcggctg-tgcagctct 893
>gnl|UG|Mm#S11102429 Mus musculus tropomyosin 4, mRNA (cDNA clone
MGC:38384 IMAGE:5345587), complete cds /cds=p(38,784)
/gb=BC023701 /gi=23958443 /ug=Mm.295124 /len=2118
Length = 2118
Score = 145 bits (73), Expect = 1e-33
Identities = 127/145 (87%)
Strand = Plus / Plus
Query: 125 atggctggcctcaactccctggaggcggtgagacgcaagatccaggccctgcagcagcag 184
||||| ||||||||||| |||||||| |||| |||||||||||||||||||||||||||
Sbjct: 38 atggccggcctcaactcactggaggcagtgaagcgcaagatccaggccctgcagcagcag 97
Query: 185 gcggacgaggcagaggatctcgcgcacggcctgcagtgggagctggacggcgatcgcgag 244
|| ||||| |||||||||| |||||| ||||||||| | || ||||| ||||| ||||||
Sbjct: 98 gcagacgacgcagaggatcgcgcgcaaggcctgcagcgcgaactggatggcgagcgcgag 157
Query: 245 cggtgggagaaagccgaaggggatg 269
||| | |||||||| ||||| ||||
Sbjct: 158 cggcgcgagaaagctgaaggagatg 182
>gnl|UG|Hs#S4698765 AGENCOURT_8869073 Lupski_sciatic_nerve Homo
sapiens cDNA clone IMAGE:6203910 5', mRNA sequence
/clone=IMAGE:6203910 /clone_end=5' /gb=BQ933569
/gi=22348952 /ti=141977972 /ug=Hs.548530 /len=907
Length = 907
Score = 56.0 bits (28), Expect = 1e-06
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 146 gaggcggtgagacgcaagatccaggccctgcagcagcaggcggacgaggcagagga 201
|||||||||| ||||||||||||| |||||||||||||| || || ||||||||
Sbjct: 160 gaggcggtgaagcgcaagatccaggttctgcagcagcaggcagatgatgcagagga 215
>gnl|UG|Hs#S4692645 AGENCOURT_8878109 Lupski_sciatic_nerve Homo
sapiens cDNA clone IMAGE:6198452 5', mRNA sequence
/clone=IMAGE:6198452 /clone_end=5' /gb=BQ923738
/gi=22338769 /ti=142933280 /ug=Hs.535581 /len=1295
Length = 1295
Score = 56.0 bits (28), Expect = 1e-06
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 146 gaggcggtgagacgcaagatccaggccctgcagcagcaggcggacgaggcagagga 201
|||||||||| ||||||||||||| |||||||||||||| || || ||||||||
Sbjct: 164 gaggcggtgaagcgcaagatccaggttctgcagcagcaggcagatgatgcagagga 219
>gnl|UG|Ssc#S18290017 BP141742 full-length enriched swine cDNA
library, adult ovary Sus scrofa cDNA clone OVR010020B02
5', mRNA sequence /clone=OVR010020B02 /clone_end=5'
/gb=BP141742 /gi=40391213 /ug=Ssc.1829 /len=955
Length = 955
Score = 56.0 bits (28), Expect = 1e-06
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 146 gaggcggtgagacgcaagatccaggccctgcagcagcaggcggacgaggcagagga 201
|||||||||| ||||||||||||| |||||||||||||| || || ||||||||
Sbjct: 89 gaggcggtgaagcgcaagatccaggttctgcagcagcaggccgatgatgcagagga 144
>gnl|UG|Hs#S21591274 PREDICTED: Homo sapiens similar to tropomyosin
3 (LOC440939), mRNA /cds=p(1,630) /gb=XM_496620
/gi=51460978 /ug=Hs.314296 /len=1061
Length = 1061
Score = 46.1 bits (23), Expect = 0.001
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 159 gcaagatccaggccctgcagcagcaggcggacgaggcagagga 201
|||||||||||| |||||||||||||| || || ||||||||
Sbjct: 332 gcaagatccaggttctgcagcagcaggcagatgatgcagagga 374
>gnl|UG|Hs#S3217854 Homo sapiens mRNA for xylosyltransferase II
(XT-II gene) /cds=p(110,2707) /gb=AJ277442 /gi=11322269
/ug=Hs.463416 /len=3568
Length = 3568
Score = 40.1 bits (20), Expect = 0.063
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 166 ccaggccctgcagcagcagg 185
||||||||||||||||||||
Sbjct: 200 ccaggccctgcagcagcagg 181
>gnl|UG|Hs#S16818710 Homo sapiens mRNA; cDNA DKFZp686P2151 (from
clone DKFZp686P2151) /gb=BX647962 /gi=34367121
/ug=Hs.433293 /len=2940
Length = 2940
Score = 40.1 bits (20), Expect = 0.063
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 158 cgcaagatccaggccctgcagcagcaggcggacgaggcagagga 201
||||||||||||| |||||||| ||||| || || ||||||||
Sbjct: 143 cgcaagatccaggttctgcagcaccaggcagatgatgcagagga 186
>gnl|UG|Hs#S4810110 PREDICTED: Homo sapiens similar to CDRT15
protein (LOC256223), mRNA /cds=p(21,866) /gb=XM_170840
/gi=37544656 /ug=Hs.131916 /len=866
Length = 866
Score = 38.2 bits (19), Expect = 0.25
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 167 caggccctgcagcagcagg 185
|||||||||||||||||||
Sbjct: 671 caggccctgcagcagcagg 653
>gnl|UG|Hs#S15638196 Homo sapiens transmembrane and coiled-coil
domains 3 (TMCC3), mRNA /cds=p(119,1552) /gb=NM_020698
/gi=29789109 /ug=Hs.370410 /len=4727
Length = 4727
Score = 36.2 bits (18), Expect = 0.98
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 40 ggcgcggctgctgcagct 57
||||||||||||||||||
Sbjct: 18 ggcgcggctgctgcagct 1
Database: UniGene(Bt+Hs+Ssc+Mm)
Posted date: Mar 18, 2005 8:01 PM
Number of letters in database: 222,131,506
Number of sequences in database: 151,043
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 365
length of database: 222,131,506
effective HSP length: 18
effective length of query: 347
effective length of database: 219,412,732
effective search space: 76136218004
effective search space used: 76136218004
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)