>20050322S-034433 (20050322S-034433) 20050322S-034433 GAGCCGAGCC GAGCGCCCGC CGCTGCCCGC CGCCCGCTGC GTGCGCCTCC GCGCCATGGC TGGCCTCAAC TCCCTGGAGG CGGTGAAACG CAAGATCCAG GCCCTGCAGC AGCAGGCGGA CGAGGCAGAG GATCGCGCGC AGGGCCTGCA GCGGGAGCTG GACGGCGAGC GCGAGCGGCG GGAGAAAGCC GAAGGGGATG TAGCAGCTCT CAATCGGCGC ATCCAACTCG TTGAGGAGGA GTTGGACAGG GCTCAGGAAC GACTGGCCAC AGCCCTGCAG AAGCTTGAGG AGGCAGAAAA GGCTGCAGAT GAGAGCGAGA GAGGAATGAA GGTGATAGAA AACCGGGCCA TGAAAGATGA GGAGAAGATG GAGATTCAGG AGCGTGCCGA GGTGTCTGAA CTAAAATGTG GTGACCTGGA AGAAGAACTC AAGAATGTCA CCAACAACCT GAAGTCGCTA GAGGCTGCAT CTGAAAAGTA TTCTGAAAAG GAGGATAAAT ATGAAGAAGA GATTAAACTT CTGTCTGACA AACTGAAAGA GGCTGAGACC CGTGCTGAAT TTGCAGAGAG AACAGTTGCA AAACTGGAAA AGACCATCGA TGACCTGGAA GAAAAACTTG CCCAGGCCAA AGAAGAGAAC GTGGGCTTAC ATCAGACACT GGATCAGACA CTAAACGAAC TAAACTGTAT ATAACCAAAA CAGAAGAGTC TCGTTCCATC AGAAACTCCA GAGCTACGTG TTTTTCTCTT CTCTTGNTAG AAAGTTCTTT TNNGTATGCC TCTTTGCTTN GCTGGAAATG TNCAGCAAAT TATGAATACG TGACCNNAAT ATTTGTATCA GAAAAGCTTT GAGCACAGTT TAATCTATTC CTTCCTTTTT TTTCAGTGGC ACAGCTTTTT CAGCTCTATT TTATCCTNAA TTGCATTTAT CCCTAAGTAN GCAGGTTATT TCATATGAGC ATACTCTTCT AGACTGAGGG CATTGGTTCT GGGAGAA
Query= 20050322S-034433 (20050322S-034433) 20050322S-034433
(997 letters)
Database: UniGene(Bt+Hs+Ssc+Mm)
151,043 sequences; 222,131,506 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gnl|UG|Hs#S7112518 PREDICTED: Homo sapiens similar to tropomyosi... 545 e-153
Alignment gnl|UG|Mm#S11102429 Mus musculus tropomyosin 4, mRNA (cDNA clone... 406 e-112
Alignment gnl|UG|Hs#S3989649 Homo sapiens cDNA FLJ32003 fis, clone NT2RP70... 224 6e-57
Alignment gnl|UG|Hs#S21311480 full-length cDNA clone CS0DK002YI10 of HeLa ... 172 2e-41
Alignment gnl|UG|Bt#S11975653 6664 MARC BSM Bos taurus cDNA 5', mRNA seque... 147 1e-33
Alignment gnl|UG|Mm#S9085693 Mus musculus 18-day embryo whole body cDNA, R... 145 4e-33
Alignment gnl|UG|Mm#S7114452 Mouse skeletal muscle beta tropomyosin mRNA, ... 145 4e-33
Alignment gnl|UG|Hs#S3436485 601859996F1 NIH_MGC_61 Homo sapiens cDNA clon... 139 3e-31
Alignment gnl|UG|Ssc#S18260562 BP157053 full-length enriched swine cDNA li... 131 6e-29
Alignment gnl|UG|Ssc#S6089598 Z98799 pT7T318U Sus scrofa domestica cDNA cl... 105 4e-21
>gnl|UG|Hs#S7112518 PREDICTED: Homo sapiens similar to tropomyosin 4
(LOC285321), mRNA /cds=p(283,759) /gb=XM_208313
/gi=51463928 /ug=Hs.449194 /len=1364
Length = 1364
Score = 545 bits (275), Expect = e-153
Identities = 433/483 (89%), Gaps = 5/483 (1%)
Strand = Plus / Plus
Query: 378 aggagcgtgccgaggtgtctgaactaaaatgtggtgacctggaagaagaactcaagaatg 437
||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 443 aggagcgtgtggaggtgtctgaactaaaatgtggtgaccttgaagaagaactcaagaatg 502
Query: 438 tcaccaacaacctgaagtcgctagaggctgcatctgaaaagtattctgaaaaggaggata 497
| || ||||| ||||| || || |||||||| |||||||||||||||||||||||||| |
Sbjct: 503 ttactaacaatctgaaatctctggaggctgcgtctgaaaagtattctgaaaaggaggaca 562
Query: 498 aatatgaagaagagattaaacttctgtctgacaaactgaaagaggctgagacccgtgctg 557
||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 563 aatgtgaagaagaaattaaacttctgtgtgacaaactgaaagaggctgagacccgtgctg 622
Query: 558 aatttgcagagagaacagttgcaaaactggaaaagaccatcgatgacctggaagaaaaac 617
|||||||||||||||| |||||||||||||||||||| || |||||||||||||| ||||
Sbjct: 623 aatttgcagagagaacggttgcaaaactggaaaagacaattgatgacctggaagagaaac 682
Query: 618 ttgcccaggccaaagaagagaacgtgggcttacatcagacactggatcagacactaaacg 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ttgcccaggccaaagaagagaacgtgggcttacatcagacactggatcagacactaaacg 742
Query: 678 aactaaactgtatataaccaaaacagaagagtctcgttccatcagaaactccagagctac 737
| || |||||||||||| |||||||||||||||| |||||| |||||||||| ||||| |
Sbjct: 743 agcttaactgtatataagcaaaacagaagagtcttgttccaacagaaactccggagctcc 802
Query: 738 gt--gtttttctcttctcttgntagaaagttcttttnngta-tgcc-tctttgcttngct 793
|| || |||||||||||||| || |||||| ||| || |||| |||| |||| |||
Sbjct: 803 gtgggtctttctcttctcttgtaag-aagttccttttgttattgccatcttcgctttgct 861
Query: 794 ggaaatgtncagcaaattatgaatacgtgaccnnaatatttgtatcagaaaagctttgag 853
|||||||| |||||||||||||||| ||||| | ||||||| || ||||||||||
Sbjct: 862 ggaaatgtcaagcaaattatgaatacatgaccaaatattttgtattggagaagctttgag 921
Query: 854 cac 856
|||
Sbjct: 922 cac 924
Score = 254 bits (128), Expect = 6e-66
Identities = 176/192 (91%)
Strand = Plus / Plus
Query: 192 aaggggatgtagcagctctcaatcggcgcatccaactcgttgaggaggagttggacaggg 251
|||| ||||| || || ||||| || |||||||| |||||||||||| ||||||||||||
Sbjct: 149 aaggtgatgtggccgccctcaaccgacgcatccagctcgttgaggagaagttggacaggg 208
Query: 252 ctcaggaacgactggccacagccctgcagaagcttgaggaggcagaaaaggctgcagatg 311
|||||||| |||||||||| |||| ||||||||| |||||||||||||| ||||||||||
Sbjct: 209 ctcaggaaagactggccacggccccgcagaagctggaggaggcagaaaaagctgcagatg 268
Query: 312 agagcgagagaggaatgaaggtgatagaaaaccgggccatgaaagatgaggagaagatgg 371
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 269 agagtgagagaggaatgaaggtgatagaaaaccgggccatgaaggatgaggagaagatgg 328
Query: 372 agattcaggagc 383
| ||||||||||
Sbjct: 329 aaattcaggagc 340
>gnl|UG|Mm#S11102429 Mus musculus tropomyosin 4, mRNA (cDNA clone
MGC:38384 IMAGE:5345587), complete cds /cds=p(38,784)
/gb=BC023701 /gi=23958443 /ug=Mm.295124 /len=2118
Length = 2118
Score = 406 bits (205), Expect = e-112
Identities = 289/317 (91%)
Strand = Plus / Plus
Query: 378 aggagcgtgccgaggtgtctgaactaaaatgtggtgacctggaagaagaactcaagaatg 437
||||||| || ||||| ||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 468 aggagcgggcggaggtatctgaactaaagtgtggtgacctggaagaagagctcaagaatg 527
Query: 438 tcaccaacaacctgaagtcgctagaggctgcatctgaaaagtattctgaaaaggaggata 497
| || ||||| ||||| || || |||||||| ||||||||||||||||||||||||||||
Sbjct: 528 taactaacaatctgaaatcactggaggctgcttctgaaaagtattctgaaaaggaggata 587
Query: 498 aatatgaagaagagattaaacttctgtctgacaaactgaaagaggctgagacccgtgctg 557
||||||||||||| || || |||||||||||||| ||||| |||||||||||||| ||||
Sbjct: 588 aatatgaagaagaaatcaagcttctgtctgacaagctgaaggaggctgagacccgagctg 647
Query: 558 aatttgcagagagaacagttgcaaaactggaaaagaccatcgatgacctggaagaaaaac 617
| |||||||| || |||||| | |||||||| ||||| ||||||||||||||||||||||
Sbjct: 648 agtttgcagaaaggacagtttctaaactggagaagacaatcgatgacctggaagaaaaac 707
Query: 618 ttgcccaggccaaagaagagaacgtgggcttacatcagacactggatcagacactaaacg 677
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 708 ttgcccaggccaaagaagagaatgtgggcttacatcagacactggaccagacactaaacg 767
Query: 678 aactaaactgtatataa 694
|||| ||||||||||||
Sbjct: 768 aacttaactgtatataa 784
Score = 341 bits (172), Expect = 3e-92
Identities = 283/320 (88%)
Strand = Plus / Plus
Query: 56 atggctggcctcaactccctggaggcggtgaaacgcaagatccaggccctgcagcagcag 115
||||| ||||||||||| |||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 38 atggccggcctcaactcactggaggcagtgaagcgcaagatccaggccctgcagcagcag 97
Query: 116 gcggacgaggcagaggatcgcgcgcagggcctgcagcgggagctggacggcgagcgcgag 175
|| ||||| ||||||||||||||||| ||||||||||| || ||||| ||||||||||||
Sbjct: 98 gcagacgacgcagaggatcgcgcgcaaggcctgcagcgcgaactggatggcgagcgcgag 157
Query: 176 cggcgggagaaagccgaaggggatgtagcagctctcaatcggcgcatccaactcgttgag 235
||||| |||||||| ||||| |||| ||| |||||||| || ||||||||||| | |||
Sbjct: 158 cggcgcgagaaagctgaaggagatgcagccgctctcaaccgccgcatccaactgctggag 217
Query: 236 gaggagttggacagggctcaggaacgactggccacagccctgcagaagcttgaggaggca 295
||||| ||||| |||||||||| | |||||||||||||||||||| || || ||||||
Sbjct: 218 gaggaactggaccgggctcaggagcagctggccacagccctgcagaatctggaagaggca 277
Query: 296 gaaaaggctgcagatgagagcgagagaggaatgaaggtgatagaaaaccgggccatgaaa 355
|| |||||||| |||||||| |||||||| |||||||| ||||| ||||| |||||||||
Sbjct: 278 gagaaggctgctgatgagagtgagagaggcatgaaggtaatagagaaccgagccatgaaa 337
Query: 356 gatgaggagaagatggagat 375
|||||||| |||||||||||
Sbjct: 338 gatgaggaaaagatggagat 357
>gnl|UG|Hs#S3989649 Homo sapiens cDNA FLJ32003 fis, clone
NT2RP7009397 /gb=AK056565 /gi=16552003 /ug=Hs.466088
/len=3108
Length = 3108
Score = 224 bits (113), Expect = 6e-57
Identities = 128/133 (96%)
Strand = Plus / Minus
Query: 56 atggctggcctcaactccctggaggcggtgaaacgcaagatccaggccctgcagcagcag 115
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 atggccggcctcaactccctggaggcggtgaaacgcaagatccaggccctgcagcagcag 772
Query: 116 gcggacgaggcagaggatcgcgcgcagggcctgcagcgggagctggacggcgagcgcgag 175
||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 gcggacgaggcggaagaccgcgcgcagggcctgcagcgggagctggacggcgagcgcgag 712
Query: 176 cggcgggagaaag 188
||||| |||||||
Sbjct: 711 cggcgcgagaaag 699
>gnl|UG|Hs#S21311480 full-length cDNA clone CS0DK002YI10 of HeLa
cells Cot 25-normalized of Homo sapiens (human)
/gb=CR590682 /gi=50471489 /ug=Hs.300772 /len=1735
Length = 1735
Score = 172 bits (87), Expect = 2e-41
Identities = 129/143 (90%)
Strand = Plus / Plus
Query: 230 gttgaggaggagttggacagggctcaggaacgactggccacagccctgcagaagcttgag 289
|||||||||||| ||||| |||| ||||| || ||||| ||||||||||||||||| |||
Sbjct: 377 gttgaggaggagctggaccgggcccaggagcgcctggctacagccctgcagaagctggag 436
Query: 290 gaggcagaaaaggctgcagatgagagcgagagaggaatgaaggtgatagaaaaccgggcc 349
||||| || ||||| || |||||||||||||||||||||||||| || ||||||||||||
Sbjct: 437 gaggccgagaaggcggctgatgagagcgagagaggaatgaaggtcatcgaaaaccgggcc 496
Query: 350 atgaaagatgaggagaagatgga 372
||||| |||||||||||||||||
Sbjct: 497 atgaaggatgaggagaagatgga 519
Score = 54.0 bits (27), Expect = 1e-05
Identities = 96/119 (80%)
Strand = Plus / Plus
Query: 494 gataaatatgaagaagagattaaacttctgtctgacaaactgaaagaggctgagacccgt 553
|||||||||||||| ||||| ||||| || || || ||||| ||||||||||||||
Sbjct: 749 gataaatatgaagaggagatcaaactgttggaggagaagctgaaggaggctgagacccga 808
Query: 554 gctgaatttgcagagagaacagttgcaaaactggaaaagaccatcgatgacctggaaga 612
|| || ||||| ||||| | || ||||| |||| || |||||||||||||| |||||
Sbjct: 809 gcagagtttgccgagaggtctgtggcaaagttggagaaaaccatcgatgacctagaaga 867
>gnl|UG|Bt#S11975653 6664 MARC BSM Bos taurus cDNA 5', mRNA sequence
/clone_end=5' /gb=BF430381 /gi=11442478 /ti=480294234
/ug=Bt.12477 /len=1027
Length = 1027
Score = 147 bits (74), Expect = 1e-33
Identities = 131/150 (87%)
Strand = Plus / Plus
Query: 233 gaggaggagttggacagggctcaggaacgactggccacagccctgcagaagcttgaggag 292
||||||||| ||||| |||| ||||| || ||||| ||||||||||||||||| ||||||
Sbjct: 302 gaggaggagctggaccgggcacaggagcgtctggctacagccctgcagaagctggaggag 361
Query: 293 gcagaaaaggctgcagatgagagcgagagaggaatgaaggtgatagaaaaccgggccatg 352
|| || ||||| || |||||||||||||||||||||||||| || |||||||| || |||
Sbjct: 362 gctgagaaggcagctgatgagagcgagagaggaatgaaggtcatcgaaaaccgagctatg 421
Query: 353 aaagatgaggagaagatggagattcaggag 382
|| |||||||| ||||||||| | ||||||
Sbjct: 422 aaggatgaggaaaagatggagctgcaggag 451
>gnl|UG|Mm#S9085693 Mus musculus 18-day embryo whole body cDNA,
RIKEN full-length enriched library, clone:1100001I18
product:tropomyosin 2, beta, full insert sequence
/cds=p(83,937) /gb=AK003175 /gi=12833676 /ug=Mm.121878
/len=1703
Length = 1703
Score = 145 bits (73), Expect = 4e-33
Identities = 142/165 (86%)
Strand = Plus / Plus
Query: 218 cgcatccaactcgttgaggaggagttggacagggctcaggaacgactggccacagccctg 277
|||||||| || ||||||||||||||||| | |||||||| || ||||||||||| |||
Sbjct: 353 cgcatccagctggttgaggaggagttggatcgtgctcaggagcgtctggccacagctctg 412
Query: 278 cagaagcttgaggaggcagaaaaggctgcagatgagagcgagagaggaatgaaggtgata 337
|||||||| |||||||| || ||||||||||||||||| |||||||| ||||| || ||
Sbjct: 413 cagaagctggaggaggccgagaaggctgcagatgagagtgagagaggcatgaaagtcatt 472
Query: 338 gaaaaccgggccatgaaagatgaggagaagatggagattcaggag 382
|||| ||| ||| |||||||| || ||||||||||||||||||
Sbjct: 473 gaaagccgagcccaaaaagatgaagaaaagatggagattcaggag 517
Score = 75.8 bits (38), Expect = 3e-12
Identities = 134/166 (80%)
Strand = Plus / Plus
Query: 471 ctgaaaagtattctgaaaaggaggataaatatgaagaagagattaaacttctgtctgaca 530
|||| ||||| ||| | ||||| || ||||||||||| ||||| || |||| |||||||
Sbjct: 714 ctgagaagtactctcagaaggaagacaaatatgaagaggagatcaaggttctctctgaca 773
Query: 531 aactgaaagaggctgagacccgtgctgaatttgcagagagaacagttgcaaaactggaaa 590
| ||||| |||||||| || || ||||| |||||||||||| |||| | ||| |||| |
Sbjct: 774 agctgaaggaggctgaaactcgggctgagtttgcagagagatcagtaaccaaattggaga 833
Query: 591 agaccatcgatgacctggaagaaaaacttgcccaggccaaagaaga 636
| | ||| |||||| | ||||| ||| | ||||| |||||||||||
Sbjct: 834 aaagcattgatgacttagaagagaaagtggcccatgccaaagaaga 879
>gnl|UG|Mm#S7114452 Mouse skeletal muscle beta tropomyosin mRNA,
complete cds. /cds=p(35,889) /gb=M81086 /gi=202162
/ug=Mm.646 /len=2097
Length = 2097
Score = 145 bits (73), Expect = 4e-33
Identities = 142/165 (86%)
Strand = Plus / Plus
Query: 218 cgcatccaactcgttgaggaggagttggacagggctcaggaacgactggccacagccctg 277
||||| || ||||| |||||||||||||| |||| ||||| || ||||| |||||| ||
Sbjct: 305 cgcattcagctcgtagaggaggagttggatcgggcacaggagcgcctggctacagccttg 364
Query: 278 cagaagcttgaggaggcagaaaaggctgcagatgagagcgagagaggaatgaaggtgata 337
|| ||||| |||||||| || || || || |||||||||||||||||||||||||| ||
Sbjct: 365 caaaagctggaggaggctgagaaagccgcggatgagagcgagagaggaatgaaggtcatt 424
Query: 338 gaaaaccgggccatgaaagatgaggagaagatggagattcaggag 382
||||||||||||||||| |||||||| ||||||||| | ||||||
Sbjct: 425 gaaaaccgggccatgaaggatgaggaaaagatggagctgcaggag 469
Score = 67.9 bits (34), Expect = 8e-10
Identities = 100/122 (81%)
Strand = Plus / Plus
Query: 491 gaggataaatatgaagaagagattaaacttctgtctgacaaactgaaagaggctgagacc 550
||||| ||||| ||||||||||| ||||||||| || || ||||||||||||||||||
Sbjct: 686 gaggacaaatacgaagaagagatcaaacttctggaggagaagctgaaagaggctgagacc 745
Query: 551 cgtgctgaatttgcagagagaacagttgcaaaactggaaaagaccatcgatgacctggaa 610
|| || || ||||| || ||| | || ||||| |||| || ||||| ||||| ||||||
Sbjct: 746 cgagcagagtttgctgaaagatctgtggcaaagttggagaaaaccattgatgatctggaa 805
Query: 611 ga 612
||
Sbjct: 806 ga 807
>gnl|UG|Hs#S3436485 601859996F1 NIH_MGC_61 Homo sapiens cDNA clone
IMAGE:4072559 5', mRNA sequence /clone=IMAGE:4072559
/clone_end=5' /gb=BG506071 /gi=13467588 /ti=46409918
/ug=Hs.447786 /len=924
Length = 924
Score = 139 bits (70), Expect = 3e-31
Identities = 82/86 (95%)
Strand = Plus / Plus
Query: 643 gggcttacatcagacactggatcagacactaaacgaactaaactgtatataaccaaaaca 702
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 121 gggcttacatcagacactggatcagacactaaacgaacttaactgtatataagcaaaaca 180
Query: 703 gaagagtctcgttccatcagaaactc 728
||||||||| |||||| |||||||||
Sbjct: 181 gaagagtcttgttccaacagaaactc 206
Score = 71.9 bits (36), Expect = 5e-11
Identities = 84/97 (86%), Gaps = 3/97 (3%)
Strand = Plus / Plus
Query: 781 tctttgcttngctggaaatgtncagcaaattatgaatacgtgaccnnaatatttgtatca 840
|||| |||| ||||||||||| |||||||||||||||| ||||| ||||||||||||
Sbjct: 263 tcttcgctttgctggaaatgtcaagcaaattatgaatacatgacc-aaatatttgtatcg 321
Query: 841 gaaaagctttgagca-cagtttaatct-attccttcc 875
|| ||||| |||||| ||||| ||||| |||||||||
Sbjct: 322 gagaagctatgagcaccagttaaatctcattccttcc 358
>gnl|UG|Ssc#S18260562 BP157053 full-length enriched swine cDNA
library, adult spleen Sus scrofa cDNA clone SPL010009B03
5', mRNA sequence /clone=SPL010009B03 /clone_end=5'
/gb=BP157053 /gi=40406526 /ug=Ssc.20571 /len=893
Length = 893
Score = 131 bits (66), Expect = 6e-29
Identities = 129/150 (86%)
Strand = Plus / Plus
Query: 233 gaggaggagttggacagggctcaggaacgactggccacagccctgcagaagcttgaggag 292
||||||||| ||||| |||| ||||| || ||||||||||||||||| ||||| ||||||
Sbjct: 394 gaggaggagctggaccgggcgcaggagcgtctggccacagccctgcaaaagctggaggag 453
Query: 293 gcagaaaaggctgcagatgagagcgagagaggaatgaaggtgatagaaaaccgggccatg 352
|| | ||||| || |||||||| || |||||||||||||| || |||||||| ||||||
Sbjct: 454 gccgggaaggcagctgatgagagtgaaagaggaatgaaggtcattgaaaaccgagccatg 513
Query: 353 aaagatgaggagaagatggagattcaggag 382
|| |||||||| ||||||||| | ||||||
Sbjct: 514 aaggatgaggaaaagatggagctgcaggag 543
Score = 60.0 bits (30), Expect = 2e-07
Identities = 99/122 (81%)
Strand = Plus / Plus
Query: 491 gaggataaatatgaagaagagattaaacttctgtctgacaaactgaaagaggctgagacc 550
||||||||||||||||| ||||| ||||| ||| || || || || ||||||||||||
Sbjct: 760 gaggataaatatgaagaggagatcaaactgctggaagagaagctaaaggaggctgagacc 819
Query: 551 cgtgctgaatttgcagagagaacagttgcaaaactggaaaagaccatcgatgacctggaa 610
|| || || ||||| || || | || ||||| |||| || ||||||||||||||||||
Sbjct: 820 cgagcagagtttgccgaaaggtcggtggcaaagttggagaaaaccatcgatgacctggaa 879
Query: 611 ga 612
||
Sbjct: 880 ga 881
>gnl|UG|Ssc#S6089598 Z98799 pT7T318U Sus scrofa domestica cDNA clone
pAZ3A08 similar to alpha tropomyosin, mRNA sequence
/clone=pAZ3A08 /gb=Z98799 /gi=5706072 /ug=Ssc.13956
/len=1054
Length = 1054
Score = 105 bits (53), Expect = 4e-21
Identities = 137/165 (83%)
Strand = Plus / Plus
Query: 218 cgcatccaactcgttgaggaggagttggacagggctcaggaacgactggccacagccctg 277
||||||||||| |||||||| ||| ||||| | || ||||| |||||||| ||||| |
Sbjct: 267 cgcatccaactggttgaggaagagctggaccgtgcccaggagcgactggcaacagcttta 326
Query: 278 cagaagcttgaggaggcagaaaaggctgcagatgagagcgagagaggaatgaaggtgata 337
||||| ||||||||||| || ||||| ||||||||||| |||||||| ||||| || ||
Sbjct: 327 cagaaacttgaggaggctgagaaggcagcagatgagagtgagagaggcatgaaagtcatt 386
Query: 338 gaaaaccgggccatgaaagatgaggagaagatggagattcaggag 382
|||| ||| ||| || ||||||||||| ||||| |||||||||
Sbjct: 387 gaaagccgagcccaaaaggatgaggagaaaatggaaattcaggag 431
Score = 54.0 bits (27), Expect = 1e-05
Identities = 69/83 (83%)
Strand = Plus / Plus
Query: 488 aaggaggataaatatgaagaagagattaaacttctgtctgacaaactgaaagaggctgag 547
||||| || ||||||||||||||||| || | || |||||||| ||||| ||||||||
Sbjct: 645 aaggaagacaaatatgaagaagagatcaaggtcctttctgacaagctgaaggaggctgaa 704
Query: 548 acccgtgctgaatttgcagagag 570
|| || || || |||||||||||
Sbjct: 705 actcgggccgagtttgcagagag 727
Database: UniGene(Bt+Hs+Ssc+Mm)
Posted date: Mar 18, 2005 8:01 PM
Number of letters in database: 222,131,506
Number of sequences in database: 151,043
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 997
length of database: 222,131,506
effective HSP length: 19
effective length of query: 978
effective length of database: 219,261,689
effective search space: 214437931842
effective search space used: 214437931842
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)