Search to UniGene2 database
Query= 20060611S-026130 (20060611S-026130) 20060611S-026130
(336 letters)
Database: UniGene(Bt+Hs+Ssc+Mm)
166,829 sequences; 236,476,188 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gnl|UG|Hs#S1728950 Homo sapiens protein disulfide isomerase-asso... 80 7e-14
Alignment gnl|UG|Mm#S11087092 PREDICTED: Mus musculus dual oxidase 1 (Duox... 44 0.004
Alignment gnl|UG|Mm#S9552176 Mus musculus AN2/NG2 proteoglycan mRNA, compl... 44 0.004
Alignment gnl|UG|Mm#S8082162 Mus musculus RAS protein activator like 1 (GA... 44 0.004
Alignment gnl|UG|Mm#S10832819 Mus musculus 14, 17 days embryo head cDNA, R... 44 0.004
Alignment gnl|UG|Hs#S16886684 Homo sapiens cDNA FLJ44032 fis, clone TESTI4... 40 0.061
Alignment gnl|UG|Hs#S18214927 Homo sapiens AT rich interactive domain 1B (... 38 0.24
Alignment gnl|UG|Hs#S18960046 PREDICTED: Homo sapiens hypothetical protein... 38 0.24
Alignment gnl|UG|Ssc#S18545987 BX914638 Sus Scrofa library (scan) Sus scro... 38 0.24
Alignment gnl|UG|Hs#S1730299 Homo sapiens nuclear mitotic apparatus protei... 36 0.96
>gnl|UG|Hs#S1728950 Homo sapiens protein disulfide
isomerase-associated 4 (PDIA4), mRNA /cds=p(243,2180)
/gb=NM_004911 /gi=33469983 /ug=Hs.93659 /len=2930
Length = 2930
Score = 79.8 bits (40), Expect = 7e-14
Identities = 82/96 (85%)
Strand = Plus / Plus
Query: 81 atgaggccccggaaagcatgcctgctcctcctgctcctggccctggctcagctgctggcc 140
||||||||||||||||| | ||||||||| |||||| ||| |||| ||||||||||||
Sbjct: 243 atgaggccccggaaagccttcctgctcctgctgctcttggggctggtgcagctgctggcc 302
Query: 141 gcggcgagcgccgggggcccagacgaagattcttct 176
| |||| | |||| |||||| ||||| |||||||||
Sbjct: 303 gtggcgggtgccgagggcccggacgaggattcttct 338
>gnl|UG|Mm#S11087092 PREDICTED: Mus musculus dual oxidase 1 (Duox1),
mRNA /cds=p(1,4656) /gb=XM_130483 /gi=51706362
/ug=Mm.108582 /len=5235
Length = 5235
Score = 44.1 bits (22), Expect = 0.004
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 106 tcctcctgctcctggccctggc 127
||||||||||||||||||||||
Sbjct: 3587 tcctcctgctcctggccctggc 3608
>gnl|UG|Mm#S9552176 Mus musculus AN2/NG2 proteoglycan mRNA, complete
cds /cds=p(31,7014) /gb=AF352400 /gi=17225629
/ug=Mm.41329 /len=7256
Length = 7256
Score = 44.1 bits (22), Expect = 0.004
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 99 tgcctgctcctcctgctcctggccct 124
|||||| |||||||||||||||||||
Sbjct: 6733 tgcctgatcctcctgctcctggccct 6758
>gnl|UG|Mm#S8082162 Mus musculus RAS protein activator like 1 (GAP1
like) (Rasal1), mRNA /cds=p(268,2667) /gb=NM_013832
/gi=31980728 /ug=Mm.41209 /len=3249
Length = 3249
Score = 44.1 bits (22), Expect = 0.004
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 111 ctgctcctggccctggctcagctgctggcc 140
|||||||| |||||||| ||||||||||||
Sbjct: 1830 ctgctccttgccctggcccagctgctggcc 1801
>gnl|UG|Mm#S10832819 Mus musculus 14, 17 days embryo head cDNA,
RIKEN full-length enriched library, clone:3230402E01
product:PROTEIN DISULFIDE ISOMERASE A4 PRECURSOR (EC
5.3.4.1) (PROTEIN ERP-72) (ERP72), full insert sequence
/cds=p(59,1984) /gb=AK028292 /gi=26390222 /ug=Mm.2442
/len=2381
Length = 2381
Score = 44.1 bits (22), Expect = 0.004
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 109 tcctgctcctggccctggctcagctgctggccgcggcgagcgccgg 154
|||||||| |||| ||| | ||||||||||| || |||||||||||
Sbjct: 87 tcctgctcttggcgctgacacagctgctggctgctgcgagcgccgg 132
>gnl|UG|Hs#S16886684 Homo sapiens cDNA FLJ44032 fis, clone
TESTI4028059, highly similar to 6-phosphofructokinase,
muscle type (EC 2.7.1.11) /gb=AK126020 /gi=34532347
/ug=Hs.75160 /len=3579
Length = 3579
Score = 40.1 bits (20), Expect = 0.061
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 99 tgcctgctcctcctgctcctggcc 122
||||||||||||| ||||||||||
Sbjct: 3345 tgcctgctcctccagctcctggcc 3322
>gnl|UG|Hs#S18214927 Homo sapiens AT rich interactive domain 1B
(SWI1-like) (ARID1B), transcript variant 1, mRNA
/cds=p(153,6848) /gb=NM_017519 /gi=40068465
/ug=Hs.291587 /len=8246
Length = 8246
Score = 38.2 bits (19), Expect = 0.24
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 101 cctgctcctcctgctcctg 119
|||||||||||||||||||
Sbjct: 982 cctgctcctcctgctcctg 964
>gnl|UG|Hs#S18960046 PREDICTED: Homo sapiens hypothetical protein
LOC96597 (LOC96597), mRNA /cds=p(1892,2164) /gb=XM_378655
/gi=42661120 /ug=Hs.193857 /len=4838
Length = 4838
Score = 38.2 bits (19), Expect = 0.24
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 123 ctggctcagctgctggccg 141
|||||||||||||||||||
Sbjct: 2739 ctggctcagctgctggccg 2757
>gnl|UG|Ssc#S18545987 BX914638 Sus Scrofa library (scan) Sus scrofa
cDNA clone scan0027d.f.11 5prim, mRNA sequence
/clone=scan0027d.f.11 /clone_end=5' /gb=BX914638
/gi=41131417 /ug=Ssc.6243 /len=760
Length = 760
Score = 38.2 bits (19), Expect = 0.24
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 102 ctgctcctcctgctcctgg 120
|||||||||||||||||||
Sbjct: 234 ctgctcctcctgctcctgg 216
>gnl|UG|Hs#S1730299 Homo sapiens nuclear mitotic apparatus protein 1
(NUMA1), mRNA /cds=p(259,6564) /gb=NM_006185 /gi=5453819
/ug=Hs.523873 /len=7217
Length = 7217
Score = 36.2 bits (18), Expect = 0.96
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 104 gctcctcctgctcctggccctggctc 129
|||||||||||| ||| |||||||||
Sbjct: 3253 gctcctcctgctgctgcccctggctc 3228
Database: UniGene(Bt+Hs+Ssc+Mm)
Posted date: Jun 10, 2005 8:02 PM
Number of letters in database: 236,476,188
Number of sequences in database: 166,829
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
length of query: 336
length of database: 236,476,188
effective HSP length: 18
effective length of query: 318
effective length of database: 233,473,266
effective search space: 74244498588
effective search space used: 74244498588
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)