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[Overview] [RefSeq] [UniGene] [Cluster & SNP] [Alignment]

Assembly Name:  20030531C-005106

Length: 880

Sequence:  [FASTA format sequence]
CAGACTGGTT TAAATTACCC ACCAGGAAAT ATGTGGCTGT AGGAGTATGC TTAATTCATG
CTCATTGAAA GTGAGCCAGG GCTGTTTTCT CCCCCTCCCT CCTTGCCTCC CGGTTCATAT
AACCCCCGCT GCCTCCAGCC TGCCTTTGCC CACTTGACTT GCTGGCCCTG AGCACGGAGA
GGTGCAGGGA GAATCTGAGA ATGGGCACGT TCTTCTCTGA GACAGGGTGG CTCTGCCTGA
CTGTCACGGC AGTGCTGGGA GCAGTAATTC TTTGCAAACT CAAGAAGAAC CACAGGCAGG
AGGGCAGAAA GATGGTCTGC CTGGCTGGCC TCTGGGGAGG GGCTTGCCTG CTCAGCCTCT
CTCTCTTCTG GGGCTTGATC CTCTTCTCCC TGTCATGTTT TCTCATGTAT GCTTACTTTT
CTGGCCAAGA GTTTTTACCT GTGGATCAAA AGGCGGTGCT GATCACAGGT GGCGATTCTG
GGATTGGCCA TGCTTTGTCC AAGTATCTGG ATAAGCTGGG ATTCACAGTA TTTGCTGGAG
TTCTGGATGA AAAGGGATCA GGAGCAGAGG AACTACGAAG AACCTGCTCC AAGCACCTGT
CTGTGCTCCA GCTGGACATC ACCAACTCGC AGCAGATAAG AGATGCTCAC AGCAAAGTGA
TGGAAAAGGT GCAGAACAGA GGACTGTGGG CTGTGGTCAA CAACGCAGGG ATCCTTGGCT
TCCCAATCGA TGGGGAGCTC ATTCCCATGA CCCAATACAA ACGATGCATG GCCGTGAACT
TCTTCGGGGC CGTGGAAGTC ACCAAGGCAT TTTTGCCTCT TCTTAGGAAA TCCAAGGGCA
GGCTGGTGAA CATCAGCAGC ATGGCAGGAG GGGTTCCAAT

Assembly Overview:      TOP

BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		HSD17B2	hydroxysteroid (17-beta) dehydrogenase 2	283	1e-76	O
		HSD11B2	hydroxysteroid (11-beta) dehydrogenase 2	135	4e-32	O
		BDH1	3-hydroxybutyrate dehydrogenase precursor; (R)-3-hydroxybutyrate dehydrogenase	115	4e-26	O
		HSD17B6	3-hydroxysteroid epimerase; oxidative 3-alpha-hydroxysteroid-dehydrogenase; 3(alpha->beta)-hydroxysteroid epimerase; retinol dehydrogenase; oxidoreductase; NAD+ -dependent 3 alpha-hydroxysteroid dehydrogenase	109	3e-24	O
		RDH16	microsomal NAD+-dependent retinol dehydrogenase 4	105	3e-23	O
		DHRS9	NADP-dependent retinol dehydrogenase/reductase; 3-alpha hydroxysteroid dehydrogenase	103	2e-22	O
		SDR-O	orphan short-chain dehydrogenase / reductase; retinol dehydrogenase similar protein	101	6e-22	O
		RDH5	retinol dehydrogenase 5 (11-cis and 9-cis); retinol dehydrogenase 5 (11-cisand 9-cis)	94.7	7e-20	O
		DHRS10	retinal short-chain dehydrogenase/reductase 3	62	5e-10	O
		HSD11B1	hydroxysteroid (11-beta) dehydrogenase 1	56.6	2e-08	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		Hsd17b2	hydroxysteroid (17-beta) dehydrogenase 2; hydroxysteroid 17-beta dehydrogenase 2; 17 HSD type 2	266	1e-71	O
		Hsd11b2	hydroxysteroid 11-beta dehydrogenase 2; 11(beta)-HSD2	135	4e-32	O
		Bdh1	3-hydroxybutyrate dehydrogenase (heart, mitochondrial); 3-hydroxybutyrate dehydrogenase; D-beta-hydroxybutyrate dehydrogenase	117	1e-26	O
		Rdh7	retinol dehydrogenase 7; cis-Retinol/3alpha-hydroxysterol short-chain dehydrogenase	116	2e-26	O
		Rdh1	retinol dehydrogenase 1 (all trans); retinol dehydrogenase 1 (11-cis)	115	4e-26	O
		Rdh9	cis-retinol/androgen dehydrogenase type 3	112	2e-25	O
		Rdh16	retinol dehydrogenase 6; retinol dehydrogenase type 6	112	2e-25	O
		Rdhs	retinol dehydrogenase similar protein 2	110	7e-25	O
		BC089597	cis-retinol/3alpha hydroxysterol short-chain dehydrogenase-like	109	2e-24	O
		Dhrs9	RIKEN cDNA C730025I08 gene; similar to retinol dehydrogenase homolog [Rattus norvegicus]	108	3e-24	O

BLAST on UniGene:      TOP

		Definition	Score	E value	FL
		Homo sapiens hydroxysteroid (17-beta) dehydrogenase 2 (HSD17B2), mRNA	327	5e-88	O
		598611 MARC 6BOV Bos taurus cDNA 3', mRNA sequence	226	1e-57
		Mus musculus hydroxysteroid (17-beta) dehydrogenase 2 (Hsd17b2), mRNA	176	1e-42	O
		Mus musculus RIKEN cDNA D830016O14 gene (D830016O14Rik), mRNA	38.2	0.67
		AGENCOURT_11262012 NIH_MGC_135 Mus musculus cDNA clone IMAGE:30136932 5', mRNA sequence	38.2	0.67
		BB124626 RIKEN full-length enriched, adult male urinary bladder Mus musculus cDNA clone 9530098J09 3'.	38.2	0.67
		Homo sapiens, clone IMAGE:5164756, mRNA	38.2	0.67
		Homo sapiens cDNA FLJ31972 fis, clone NT2RP7008142.	38.2	0.67
		Homo sapiens ATP-binding cassette, sub-family D (ALD), member 2 (ABCD2), mRNA	38.2	0.67
		Homo sapiens hypothetical protein MGC11115 (MGC11115), mRNA	38.2	0.67

Alignment:      TOP

20030531C-005106     : ............................................................
                       ---------+---------+---------+---------+---------+---------+ 0
LVRM1_0122_H12.b.ab1 : nagtttgtcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
LVR01_0053_A10.b.ab1 :               gagcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx


20030531C-005106     : ..CAGACTGGTTTAAATTACCCACCAGGAAATATGTGGCTGTAGGAGTATGCTTAATTCA
                       ---------+---------+---------+---------+---------+---------+ 58
LVRM1_0122_H12.b.ab1 : xxCAGACTGGTTTAAATTACCCACCAGGAAATATGTGGCTGTAGGAGTATGCTTAATTCA
LVR01_0053_A10.b.ab1 : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxgAGGAGTATGCTTAATTCA


20030531C-005106     : TGCTCATTGAAAGTGAGCCAGGGCTGTTTTCTCCCCCTCCCTCCTTGCCTCCCGGTTCAT
                       ---------+---------+---------+---------+---------+---------+ 118
LVRM1_0122_H12.b.ab1 : TGCTCATTGAAAGTGAGCCAGGGCTGTTTTCTCCCCCTCCCTCCTTGCCTCCCGGTTCAT
LVR01_0053_A10.b.ab1 : TGCTCATTGAAAGTGAGCCAGGGCTGTTTTCTCCCCCTCCCTCCTTGCCTCCCGGTTCAT


20030531C-005106     : ATAACCCCCGCTGCCTCCAGCCTGCCTTTGCCCACTTGACTTGCTGGCCCTGAGCACGGA
                       ---------+---------+---------+---------+---------+---------+ 178
LVRM1_0122_H12.b.ab1 : ATAACCCCCGCTGCCTCCAGCCTGCCTTTGCCCACTTGACTTGCTGGCCCTGAGCACGGA
LVR01_0053_A10.b.ab1 : ATAACCCCCGCTGCCTCCAGCCTGCCTTTGCCCACTTGACTTGCTGGCCCTGAGCACGGA


20030531C-005106     : GAGGTGCAGGGAGAATCTGAGAATGGGCACGTTCTTCTCTGAGACAGGGTGGCTCTGCCT
                       ---------+---------+---------+---------+---------+---------+ 238
LVRM1_0122_H12.b.ab1 : GAGGTGCAGGGAGAATCTGAGAATGGGCACGTTCTTCTCTGAGACAGGGTGGCTCTGCCT
LVR01_0053_A10.b.ab1 : GAGGTGCAGGGAGAATCTGAGAATGGGCACGTTCTTCTCTGAGACAGGGTGGCTCTGCCT


20030531C-005106     : GACTGTCACGGCAGTGCTGGGAGCAGTAATTCTTTGCAAACTCAAGAAGAACCACAGGCA
                       ---------+---------+---------+---------+---------+---------+ 298
LVRM1_0122_H12.b.ab1 : GACTGTCACGGCAGTGCTGGGAGCAGTAATTCTTTGCAAACTCAAGAAGAACCACAGGCA
LVR01_0053_A10.b.ab1 : GACTGTCACGGCAGTGCTGGGAGCAGTAATTCTTTGCAAACTCAAGAAGAACCACAGGCA


20030531C-005106     : GGAGGGCAGAAAGATGGTCTGCCTGGCTGGCCTCTGGGGAGGGGCTTGCCTGCTCAGCCT
                       ---------+---------+---------+---------+---------+---------+ 358
LVRM1_0122_H12.b.ab1 : GGAGGGCAGAAAGATGGTCTGCCTGGCTGGCCTCTGGGGAGGGGCTTGCCTGCTCAGCCT
LVR01_0053_A10.b.ab1 : GGAGGGCAGAAAGATGGTCTGCCTGGCTGGCCTCTGGGGAGGGGCTTGCCTGCTCAGCCT


20030531C-005106     : CTCTCTCTTCTGGGGCTTGATCCTCTTCTCCCTGTCATGTTTTCTCATGTATGCTTACTT
                       ---------+---------+---------+---------+---------+---------+ 418
LVRM1_0122_H12.b.ab1 : CTCTCTCTTCTGGGGCTTGATCCTCTTCTCCCTGTCATGTTTTCTCATGTATGCTTACTT
LVR01_0053_A10.b.ab1 : CTCTCTCTTCTGGGGCTTGATCCTCTTCTCCCTGTCATGTTTTCTCATGTATGCTTACTT


20030531C-005106     : TTCTGGCCAAGAGTTTTTACCTGTGGATCAAAAGGCGGTGCTGATCACAGGTGGCGATTC
                       ---------+---------+---------+---------+---------+---------+ 478
LVRM1_0122_H12.b.ab1 : TTCTGGCCAAGAGTTTTTACCTGTGGATCAAAAGGCGGTGCTGATCACAGGTGGCGATTC
LVR01_0053_A10.b.ab1 : TTCTGGCCAAGAGTTTTTACCTGTGGATCAAAAGGCGGTGCTGATCACAGGTGGCGATTC


20030531C-005106     : TGGGATTGGCCATGCTTTGTCCAAGTATCTGGATAAGCTGGGATTCACAGTATTTGCTGG
                       ---------+---------+---------+---------+---------+---------+ 538
LVRM1_0122_H12.b.ab1 : TGGGATTGGCCATGCTTTGTCCAAGTATCTGGATAAGCTGGGATTCACAGTATTTGCTGG
LVR01_0053_A10.b.ab1 : TGGGATTGGCCATGCTTTGTCCAAGTATCTGGATAAGCTGGGATTCACAGTATTTGCTGG


20030531C-005106     : AGTTCTGGATGAAAAGGGATCAGGAGCAGAGGAACTACGAAGAACCTGCTCCAAGCACCT
                       ---------+---------+---------+---------+---------+---------+ 598
LVRM1_0122_H12.b.ab1 : AGTTCTGGATGAAAAGGGATCANGAGCAGAGGAACTACGAAGAACCTGCTCCAAGCACCT
LVR01_0053_A10.b.ab1 : AGTTCTGGATGAAAAGGGATCAGGAGCAGAGGAACTACGAAGAACCTGCTCCAAGCACCT


20030531C-005106     : GTCTGTGCTCCAGCTGGACATCACCAACTCGCAGCAGATAAGAGATGCTCACAGCAAAGT
                       ---------+---------+---------+---------+---------+---------+ 658
LVRM1_0122_H12.b.ab1 : GTCTGTGCTCCAGCTGGACATCACCAACTCGCAGCAGATAAGAGATGCTCACAGCAAAGT
LVR01_0053_A10.b.ab1 : GTCTGTGCTCCAGCTGGACATCACCAACTCGCAGCAGATAAGAGATGCTCACAGCAAAGT


20030531C-005106     : GATGGAAAAGGTGCAGAACAGAGGACTGTGGGCTGTGGTCAACAACGCAGGGATCCTTGG
                       ---------+---------+---------+---------+---------+---------+ 718
LVRM1_0122_H12.b.ab1 : GATGGAAAAGGTGCAGAACAAAGGACTGTGGGCTGTGGGTCACAACACAAGGATCCTTGG
LVR01_0053_A10.b.ab1 : GATGGAAAAGGTGCAGAACAGAGGACTGTGGGCTGTGGTCAACAACGCAGGGATCCTTGG


20030531C-005106     : CTTCCCAATCGATGGGGAGCTCATTCCCATGACCCAATACAAACGATGCATGGCCGTGAA
                       ---------+---------+---------+---------+---------+---------+ 778
LVRM1_0122_H12.b.ab1 : CTTCC*AATCGATGGGGAGCTCAT                                   
LVR01_0053_A10.b.ab1 : CTTCCCAATCGATGGGGAGCTCATTCCCATGACCCAATACAAACGATGCATGGCCGTGAA


20030531C-005106     : CTTCTTCGGGGCCGTGGAAGTCACCAAGGCATTTTTGCCTCTTCTTAGGAAATCCAAGGG
                       ---------+---------+---------+---------+---------+---------+ 838
LVRM1_0122_H12.b.ab1 :                                                             
LVR01_0053_A10.b.ab1 : CTTCTTCGGGGCCGTGGAAGTCACCAAGGCATTTTTGCCTCTTCTTAGGAAATCCAAGGG


20030531C-005106     : CAGGCTGGTGAACATCAGCAGCATGGCAGGAGGGGTTCCAAT..................
                       ---------+---------+---------+---------+---------+---------+ 880
LVRM1_0122_H12.b.ab1 :                                                             
LVR01_0053_A10.b.ab1 : CAGGCTGGTGAACATCAGCAGCATGGCAGGAGGGGTTCCAATggaaaagatggcggccta


20030531C-005106     : ............................................................
                       ---------+---------+---------+---------+---------+---------+ 880
LVRM1_0122_H12.b.ab1 :                                                             
LVR01_0053_A10.b.ab1 : cagctcaaccaaggcagctctgaacctgttttcggcagtcatgagaaaagagctatccaa


20030531C-005106     : ............................................................
                       ---------+---------+---------+---------+---------+---------+ 880
LVRM1_0122_H12.b.ab1 :                                                             
LVR01_0053_A10.b.ab1 : atggggaaattaaattctctgtcatccaacctggaaacttccaaaacaaccttcccaggc


20030531C-005106     : ............................................................
                       ---------+---------+---------+---------+---------+---------+ 880
LVRM1_0122_H12.b.ab1 :                                                             
LVR01_0053_A10.b.ab1 : ac