[Help]

[Overview] [RefSeq] [UniGene] [Cluster & SNP] [Alignment]

Assembly Name:  20030531C-000174

Length: 973

Sequence:  [FASTA format sequence]
ACGGTGGCCG GCGTCCCCTG CCAGGAGTGG GCTGCCCAGG AGCCCCACAG ACACAGCATC
TTCACTCCAG GGACAAATCC ACGGGCAGGT CTGGAGAAAA ATTACTGCCG TAATCCTGAC
GGTGACGACA ACGGTCCCTG GTGCTACACG ACAAACCCAC AAAAGCTCTT TGACTACTGC
GACGTCCCTC AGTGTGTAAC CTCTTCATTT GATTGCGGGA AGCCCAAGGT GGAGCCAAAG
AAGTGTCCTG CGAGGGTGGT AGGTGGGTGC GTGTCCATCC CACACTCCTG GCCCTGGCAA
ATTAGCCTTC GATACAGGTA CAGAGGGCAC TTCTGCGGAG GCACTTTAAT ATCCCCGGAG
TGGGTGCTGA CTGCTAAGCA CTGCCTGGAA AAGTCCTCAA GTCCTTCATC ATACAAGGTC
ATTTTGGGTG CACACGAAGA GCACCGCCTT GGAGAAGGAG TTCAGGAGAT AGACGTGTCC
AAGCTGTTCA AGGAGCCCTC TGGGGCGGAC ATAGCCTTGC TCAAGCTGAG CAGCCCTGCC
GTCATCACTG ACAAGGTAAT CCCGGCTTGT CTGCCAACCC CGAACTATGT GGTCGCCGAC
CGGACAGCGT GTTACATCAC TGGCTGGGGA GAAACCAAAG GCACGTACGG CGCTGGCTTA
CTCAAGGAAG CCCGGCTGCC CGTGATTGAG AACAAAGTGT GTAATCGCTA CGAGTATCTG
GATGGGAAGG TCAGCTCCAA AGAGCTGTGT GCGGGGCATC TGGCTGGAGG CATCGACAGC
TGCCAGGGTG ACAGCGGAGG GCCTCTGGTG TGCTTTGAGA AGGACAAATA CATTTTACAA
GGAGTCACTT CTTGGGGTCT TGGCTGTGCG CTCCCCAATA AGCCTGGTGT GTATGTCCGT
GTTTCAAGGT TTGTTACTTG GATTGAGGAA ATAATGAGAA AAAATTAATC CGATGGGGAA
ACAGCGGGAA GTC

Assembly Overview:      TOP

BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		PLG	plasminogen	577	e-165
		LPA	lipoprotein, Lp(a); Apolipoprotein Lp(a); antiangiogenic AK38 protein	527	e-150
		MST1	macrophage stimulating 1 (hepatocyte growth factor-like)	243	2e-64
		HGF	hepatocyte growth factor precursor; scatter factor; lung fibroblast-derived mitogen; hepatopoietin A	214	7e-56
		HPN	hepsin (transmembrane protease, serine 1); hepsin	208	5e-54
		TMPRSS3	transmembrane protease, serine 3 isoform 1; serine protease TADG12; Transmembrane protease, serine 3	194	6e-50
		TMPRSS3	transmembrane protease, serine 3 isoform 2; serine protease TADG12; Transmembrane protease, serine 3	194	6e-50
		TMPRSS3	transmembrane protease, serine 3 isoform 2; serine protease TADG12; Transmembrane protease, serine 3	194	6e-50
		TMPRSS13	mosaic serine protease	187	7e-48
		PRSS27	marapsin; channel-activating protease 2	185	4e-47	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		Plg	plasminogen	554	e-158
		Mst1	macrophage stimulating 1 (hepatocyte growth factor-like); hepatocyte growth factor-like	242	2e-64
		Hpn	hepsin	199	2e-51
		Tmprss3	transmembrane protease, serine 3	193	1e-49
		Tmprss8	distal intestinal serine protease	191	5e-49	O
			serine protease EOS; tryptase 6	187	7e-48	O
		Habp2	hypothetical protein MGC28705	184	7e-47
		Ela2a	elastase 2; neutrophil elastase	183	1e-46	O
		Prss27	pancreasin	183	1e-46	O
		F12	coagulation factor XII (Hageman factor); factor XII	179	2e-45

BLAST on UniGene:      TOP

		Definition	Score	E value	FL
		MI-P-E3-ags-e-11-1-UM.s1 MI-P-E3 Sus scrofa cDNA clone MI-P-E3-ags-e-11-1-UM 3', mRNA sequence	793	0.0
		Homo sapiens plasminogen (PLG), mRNA	412	e-113
		Bos taurus plasminogen (PLG), mRNA	371	e-101
		MI-P-E3-aak-g-11-1-UM.s1 MI-P-E3 Sus scrofa cDNA clone MI-P-E3-aak-g-11-1-UM 3', mRNA sequence	248	4e-64
		Homo sapiens solute carrier family 22 (extraneuronal monoamine transporter), member 3 (SLC22A3), mRNA	248	4e-64
		Mus musculus plasminogen (Plg), mRNA	202	2e-50
		602272382F1 NIH_MGC_84 Homo sapiens cDNA clone IMAGE:4360293 5', mRNA sequence	194	5e-48
		712631 MARC 6BOV Bos taurus cDNA 5', mRNA sequence	101	6e-20
		734113 MARC 6BOV Bos taurus cDNA 3', mRNA sequence	83.8	1e-14
		BX095666 Soares fetal liver spleen 1NFLS Homo sapiens cDNA clone IMAGp998G08379, mRNA sequence	56	3e-06

Alignment:      TOP

20030531C-000174     : ............................................................
                       ---------+---------+---------+---------+---------+---------+ 0
LVR01_0062_H12.b.ab1 : tttttttcagcatacgtgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
LVR01_0002_C10.b.ab1 :                                                             


20030531C-000174     : ..............................ACGGTGGCCGGCGTCCCCTGCCAGGAGTGG
                       ---------+---------+---------+---------+---------+---------+ 30
LVR01_0062_H12.b.ab1 : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxACGGTGGCCGGCGTCCCCTGCCAGGAGTGG
LVR01_0002_C10.b.ab1 :                                                   xxxxxxxxxx


20030531C-000174     : GCTGCCCAGGAGCCCCACAGACACAGCATCTTCACTCCAGGGACAAATCCACGGGCAGGT
                       ---------+---------+---------+---------+---------+---------+ 90
LVR01_0062_H12.b.ab1 : GCTGCCCAGGAGCCCCACAGACACAGCATCTTCACTCCAGGGACAAATCCACGGGCAGGT
LVR01_0002_C10.b.ab1 : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx


20030531C-000174     : CTGGAGAAAAATTACTGCCGTAATCCTGACGGTGACGACAACGGTCCCTGGTGCTACACG
                       ---------+---------+---------+---------+---------+---------+ 150
LVR01_0062_H12.b.ab1 : CTGGAGAAAAATTACTGCCGTAATCCTGACGGTGACGACAACGGTCCCTGGTGCTACACG
LVR01_0002_C10.b.ab1 : xxxxxxxxxxxxTACTGCCGTAATCCTGACGGTGACGACAACGGTCCCTGGTGCTACACG


20030531C-000174     : ACAAACCCACAAAAGCTCTTTGACTACTGCGACGTCCCTCAGTGTGTAACCTCTTCATTT
                       ---------+---------+---------+---------+---------+---------+ 210
LVR01_0062_H12.b.ab1 : ACAAACCCACAAAAGCTCTTTGACTACTGCGACGTCCCTCAGTGTGTAACCTCTTCATTT
LVR01_0002_C10.b.ab1 : ACAAACCCACAAAAGCTCTTTGACTACTGCGACGTCCCTCAGTGTGTAACCTCTTCATTT


20030531C-000174     : GATTGCGGGAAGCCCAAGGTGGAGCCAAAGAAGTGTCCTGCGAGGGTGGTAGGTGGGTGC
                       ---------+---------+---------+---------+---------+---------+ 270
LVR01_0062_H12.b.ab1 : GATTGCGGGAAGCCCAAGGTGGAGCCAAAGAAGTGTCCTGCGAGGGTGGTAGGTGGGTGC
LVR01_0002_C10.b.ab1 : GATTGCGGGAAGCCCAAGGTGGAGCCAAAGAAGTGTCCTGCGAGGGTGGTAGGTGGGTGC


20030531C-000174     : GTGTCCATCCCACACTCCTGGCCCTGGCAAATTAGCCTTCGATACAGGTACAGAGGGCAC
                       ---------+---------+---------+---------+---------+---------+ 330
LVR01_0062_H12.b.ab1 : GTGTCCATCCCACACTCCTGGCCCTGGCAAATTAGCCTTCGATACAGGTACAGAGGGCAC
LVR01_0002_C10.b.ab1 : GTGTCCATCCCACACTCCTGGCCCTGGCAAATTAGCCTTCGATACAGGTACAGAGGGCAC


20030531C-000174     : TTCTGCGGAGGCACTTTAATATCCCCGGAGTGGGTGCTGACTGCTAAGCACTGCCTGGAA
                       ---------+---------+---------+---------+---------+---------+ 390
LVR01_0062_H12.b.ab1 : TTCTGCGGAGGCACTTTAATATCCCCGGAGTGGGTGCTGACTGCTAAGCACTGCCTGGAA
LVR01_0002_C10.b.ab1 : TTCTGCGGAGGCACTTTAATATCCCCGGAGTGGGTGCTGACTGCTAAGCACTGCCTGGAA


20030531C-000174     : AAGTCCTCAAGTCCTTCATCATACAAGGTCATTTTGGGTGCACACGAAGAGCACCGCCTT
                       ---------+---------+---------+---------+---------+---------+ 450
LVR01_0062_H12.b.ab1 : AAGTCCTCAAGTCCTTCATCATACAAGGTCATTTTGGGTGCACACGAAGAGCACCGCCTT
LVR01_0002_C10.b.ab1 : AAGTCCTCAAGTCCTTCATCATACAAGGTCATTTTGGGTGCACACGAAGAGCACCGCCTT


20030531C-000174     : GGAGAAGGAGTTCAGGAGATAGACGTGTCCAAGCTGTTCAAGGAGCCCTCTGGGGCGGAC
                       ---------+---------+---------+---------+---------+---------+ 510
LVR01_0062_H12.b.ab1 : GGAGAAGGAGTTCAGGAGATAGACGTGTCCAAGCTGTTCAAGGAGCCCTCTGGGGCGGAC
LVR01_0002_C10.b.ab1 : GGAGAAGGAGTTCAGGAGATAGACGTGTCCAAGCTGTTCAAGGAGCCCTCTGGGGCGGAC


20030531C-000174     : ATAGCCTTGCTCAAGCTGAGCAGCCCTGCCGTCATCACTGACAAGGTAATCCCGGCTTGT
                       ---------+---------+---------+---------+---------+---------+ 570
LVR01_0062_H12.b.ab1 : ATAGCCTTGCTCAAGCTGAGCAGCCCTGCCGTCATCACTGACAAGGTAATCCCGGCTTGT
LVR01_0002_C10.b.ab1 : ATAGCCTTGCTCAAGCTGAGCAGCCCTGCCGTCATCACTGACAAGGTAATCCCGGCTTGT


20030531C-000174     : CTGCCAACCCCGAACTATGTGGTCGCCGACCGGACAGCGTGTTACATCACTGGCTGGGGA
                       ---------+---------+---------+---------+---------+---------+ 630
LVR01_0062_H12.b.ab1 : CTGCCAACCCCGAACTATGTGGTCGCCGACCGGACAGCGTGTTACATCACTGGCTGGGGA
LVR01_0002_C10.b.ab1 : CTGCCAACCCCGAACTATGTGGTCGCCGACCGGACAGCGTGTTACATCACTGGCTGGGGA


20030531C-000174     : GAAACCAAAGGCACGTACGGCGCTGGCTTACTCAAGGAAGCCCGGCTGCCCGTGATTGAG
                       ---------+---------+---------+---------+---------+---------+ 690
LVR01_0062_H12.b.ab1 : GAAACCAAAGGCACGTACGGCGCTGGCTTACTCAAGGAAGCCCGGCTGCTCGTGATTGAG
LVR01_0002_C10.b.ab1 : GAAACCAAAGGCACGTACGGCGCTGGCTTACTCAAGGAAGCCCGGCTGCCCGTGATTGAG


20030531C-000174     : AACAAAGTGTGTAATCGCTACGAGTATCTGGATGGGAAGGTCAGCTCCAAAGAGCTGTGT
                       ---------+---------+---------+---------+---------+---------+ 750
LVR01_0062_H12.b.ab1 : AACAAAGTGTGTAATCGCTACGAGTATCTGGATGGGAAGGTCAGCTCCAAAGAGCTGTGT
LVR01_0002_C10.b.ab1 : AACAAAGTGTGTAATCGCTACGAGTATCTGGATGGGAAGGTCAGCTCCAAAGAGCTGTGT


20030531C-000174     : GCGGGGCATCTGGCTGGAGGCATCGACAGCTGCCAGGGTGACAGCGGAGGGCCTCTGGTG
                       ---------+---------+---------+---------+---------+---------+ 810
LVR01_0062_H12.b.ab1 : GCGGGGCATCTGGCTGGAGGCATCGACAGCTGCCAGGGTGACAGCGGAGGGCCTCTGGTG
LVR01_0002_C10.b.ab1 : GCGGGGCATCTGGCTGGAGGCATCGACAGCTGCCAGGGTGACAGCGGAGGGCCTCTGGTG


20030531C-000174     : TGCTTTGAGAAGGACAAATACATTTTACAAGGAGTCACTTCTTGGGGTCTTGGCTGTGCG
                       ---------+---------+---------+---------+---------+---------+ 870
LVR01_0062_H12.b.ab1 : TGCTTTGAGAAGGACAAATACATTTTACAAGGAGTCACTTCTTGGGGTCTTGGCTGTGCG
LVR01_0002_C10.b.ab1 : TGCTTTGAGAANGACAAATACATTTTACAAGGAGTCACTTCTTGGGGTCTTGGCTGTGCG


20030531C-000174     : CTCCCCAATAAGCCTGGTGTGTATGTCCGTGTTTCAAGGTTTGTTACTTGGATTGAGGAA
                       ---------+---------+---------+---------+---------+---------+ 930
LVR01_0062_H12.b.ab1 : CTCCCCAATAGCCCTGGTGTGTGTGTCCGTGTTTCAAGGTTTGTTACTTGGATTTGAGGA
LVR01_0002_C10.b.ab1 : CTCCCCAATAAGCCTGGTGTGTATGTCCGTGTTTCAAGGTTTGTTACTTGGATTGAGGAA


20030531C-000174     : ATAATGAGAAAAAATTAATCCGATGGGGAAACAGCGGGAAGTC.................
                       ---------+---------+---------+---------+---------+---------+ 973
LVR01_0062_H12.b.ab1 : ATAATGA*AAAAAATTAATCCGATGGGGAAA*AGCGGGAAGTCtcaagggatctggaaac
LVR01_0002_C10.b.ab1 : ATAATGAGAAGAAATTAATCCGAATGGGAAACAGCGGGAAGTCtcaagggatctggaagc


20030531C-000174     : ............................................................
                       ---------+---------+---------+---------+---------+---------+ 973
LVR01_0062_H12.b.ab1 : tggaaccttgcccagg                                           
LVR01_0002_C10.b.ab1 : tggatccttgcgcanggaaattcagctcaaaaataattggacactaatctaaatgaagca


20030531C-000174     : ............................................................
                       ---------+---------+---------+---------+---------+---------+ 973
LVR01_0062_H12.b.ab1 :                                                             
LVR01_0002_C10.b.ab1 : ctggtctttagctaccatctactggcacattttttgggtgggggtatttgttggggaata


20030531C-000174     : ............................................................
                       ---------+---------+---------+---------+---------+---------+ 973
LVR01_0062_H12.b.ab1 :                                                             
LVR01_0002_C10.b.ab1 : atttttttccgggcccatggaattggctggaattcccttaaaaataagggcaatggcacc


20030531C-000174     : ............................................................
                       ---------+---------+---------+---------+---------+---------+ 973
LVR01_0062_H12.b.ab1 :                                                             
LVR01_0002_C10.b.ab1 : caattgccccctttggttaaaaaaaaaaaactggtacttttctttttaaaggtttttttg


20030531C-000174     : ............................................................
                       ---------+---------+---------+---------+---------+---------+ 973
LVR01_0062_H12.b.ab1 :                                                             
LVR01_0002_C10.b.ab1 : aatttttttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggggccccaccatgggtgggg


20030531C-000174     : ............................................................
                       ---------+---------+---------+---------+---------+---------+ 973
LVR01_0062_H12.b.ab1 :                                                             
LVR01_0002_C10.b.ab1 : gccccctccaaaaacccccttgggcggggggggt