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[Overview] [RefSeq] [UniGene] [Cluster & SNP] [Alignment]

Assembly Name:  20040204C-000710

Length: 999

Sequence:  [FASTA format sequence]
AGACCTGGCA GGGATTTGGG ACGCTGGACA GGCAGTTTCT TCACGTAGCC AGAGTGCGAA
CGTGGGGTGC AAAACGGGTC CTTTGCGGCG CGGTGGGTTC GGGGCCCTGG CAGCCGTTTT
GCGGAGGTGC CACGCCCTAG GGGCTGGGCC GTGGTGGGCC CGGGGTCTAC TCCGACCACC
TGGACCGCGA AGTGGCCTGG GAACTGGAAG GAAGATGTTC CCCGGGCGCT GTCCGCCGCC
CGCGCTACTG GGCCGAGGTC CCCATCTCAA CGTAGATTCT CTTTTTCCCC TCTTCTGCAG
GCTCGTTTCT GGCATGATGG CGCAAAGGGC CTTCCCGAAT CCTTATGCAG ATTTTAACAA
ATCCCTGGCC GAAGGCTACT TTGATTCTGC TGGGAGGCTC ACTCCTGAGT TCTCACAACG
TGTGAACAAT AAGATTCGAG AGCTGCTTCA GCAAATGGAG AGAGGCCTAA AATCAGCAGA
CCCTCGCGAT GGCACTGCTT ACACTGGATG GGCAGGTATC GCTGTGCTTT ACTTACACCT
CTATGATGTG TTTGGGGACC CTGCCTACCT GCAGATGGCA CATGGCTATG CAAAGCAAAG
TCTGAACTGT TTGACCAAGC GTTCCATCAC CTTCCTGTGT GGTGATGCGG GCCCCCTGGC
AGTGGCTGCT GTGGTGCATG ACAAGATGAA CAATGAGAAG CAGGCAGAAG ACTGTATCAC
CCGGCTAATT CACCTAAATA AGATTGACCC GCATGCTCCA AATGAAATGC TGTATGGACG
AATGGGCTAC ATCTATGCTC TTCTCTTTGT GAATAAGAAC TTTGGAGTAG AAAAGATTCC
TCGAAGCCAT ATTCAGCAGA TTTGTGAAAC AGTCTTAACC TCTGGAGAAA ACCTAGCTAG
AAAAAAAAAC TTCCAGAAAA AACTCCCCTG ATGTATGAAG GGAACAAAAA AATTATGTGG
GGGCTGCTCT GGGCCTGGCA GGAATTTATT ACTACCTGA


Assembly Overview:      TOP


BLAST on RefSeq (Human):      TOP
LocusDefinitionScoreE valueFL
Nucleotide ProteinLANCL1LanC lantibiotic synthetase component C-like 1 (bacterial)392e-112O
Nucleotide ProteinLANCL2LanC lantibiotic synthetase component C-like 2 (bacterial)1751e-46O
Nucleotide Proteinsimilar to LanC lantibiotic synthetase component C-like 2; testis-specific adriamycin sensitivity protein; LanC (bacterial lantibiotic synthetase component C)-like 2; G protein-coupled receptor 69B1751e-46O
Nucleotide ProteinLANCL3FLJ42925 protein52.45e-07O


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Nucleotide ProteinLancl1LanC (bacterial lantibiotic synthetase component C)-like 1365e-104O
Nucleotide ProteinLancl2LanC (bacterial lantibiotic synthetase component C)-like 21864e-50O
Nucleotide ProteinLancl3RIKEN cDNA 6030463G20 gene52.83e-07O


BLAST on UniGene:      TOP
DefinitionScoreE valueFL
UniGene GenBankBP433594 full-length enriched swine cDNA library, adult lung Sus scrofa cDNA clone LNG010014A08 5', mRNA sequence12090.0
UniGene GenBankHomo sapiens LanC lantibiotic synthetase component C-like 1 (bacterial) (LANCL1), mRNA7690.0O
UniGene GenBankMus musculus LanC (bacterial lantibiotic synthetase component C)-like (Lancl1), mRNA547e-154O
UniGene GenBankHomo sapiens LanC lantibiotic synthetase component C-like 2 (bacterial) (LANCL2), mRNA44.10.014
UniGene GenBankHomo sapiens, clone IMAGE:4420333, mRNA40.10.22
UniGene GenBank707341 MARC 6BOV Bos taurus cDNA 5', mRNA sequence40.10.22
UniGene GenBankMus musculus 10 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:B930048L16 product:unknown EST, full insert sequence38.20.86
UniGene GenBankUI-HF-BM0-adt-d-01-0-UI.r1 NIH_MGC_38 Homo sapiens cDNA clone IMAGE:3062809 5', mRNA sequence36.23.4
UniGene GenBankHomo sapiens uncharacterized hypothalamus protein HT011 (HT011), mRNA36.23.4
UniGene GenBankQV2-NN0045-201200-577-b09 NN0045 Homo sapiens cDNA, mRNA sequence36.23.4


Assembly Members: 3      TOP
LibraryPlateLoc.Read NameAccession
OVRM10061G05OVRM1_0061_G05.b.ab1BP152815
OVRM10082H02OVRM1_0082_H02.b.ab1BP153827
UTR010058F08UTR01_0058_F08.b.ab1BP464284

  

Alignment:      TOP

20040204C-000710     : ............................................................
---------+---------+---------+---------+---------+---------+ 0
OVRM1_0082_H02.b.ab1 : acgttgacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
OVRM1_0061_G05.b.ab1 : agttgtcxxxxxxxxxxxxxxxxxx
UTR01_0058_F08.b.ab1 : cctxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
20040204C-000710 : .AGACCTGGCAGGGATTTGGGACGCTGGACAGGCAGTTTCTTCACGTAGCCAGAGTGCGA
---------+---------+---------+---------+---------+---------+ 59
OVRM1_0082_H02.b.ab1 : xAGACCTGGCAGGGATTTGGGACGCTGGACAGGCAGTTTCTTCACGTAGCCAGAGTGCGA
OVRM1_0061_G05.b.ab1 : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGTTTCTTCACGTAGCCCGAGTGCGA
UTR01_0058_F08.b.ab1 : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGCCAGAGTGCGA
20040204C-000710 : ACGTGGGGTGCAAAACGG*GTCCTTTGCGGCGCGGTGGGTTCGGGGCCCTGGCAGCCGTT
---------+---------+---------+---------+---------+---------+ 118
OVRM1_0082_H02.b.ab1 : ACGTGGGGTGCAAAACGGAGTCCTTTGCGGCGCGGTGGGTTCGGGGCCCTGGCAGCCGTT
OVRM1_0061_G05.b.ab1 : ACGTGGGGTGCAAAACGG*GTCCTTTGCGGCGCGGTGGGTTCGGGGCCCTGGCAGCCGTT
UTR01_0058_F08.b.ab1 : ACGTGGGGTGCAAAACGG*GTCCTTTGCGGCGCGGTGGGTTCGGGGCCCTGGCAGCCGTT
20040204C-000710 : TTGCGGAGGTGCCACGCCCTAGGGGCTGGGCCGTGGTGGGCCCGGGGTCTACTCCGACCA
---------+---------+---------+---------+---------+---------+ 178
OVRM1_0082_H02.b.ab1 : TTGCGGAGGTGCCACGCCCTAGGGGCTGGGCCGTGGTGGGCCCGGGGTCTACTCCGACCA
OVRM1_0061_G05.b.ab1 : TTGCGGAGGTGCCACGCCCTAGGGGCTGGGCCGTGGTGGGCCCGGGGTCTACTCCGACCA
UTR01_0058_F08.b.ab1 : TTGCGGAGGTGCCACGCCCTAGGGGCTGGGCCGTGGTGGGCCCGGGGTCTACTCCGACCA
20040204C-000710 : CCTGGACCGCGAAGTGGCCTGGGAACTGGAAGGAAGATGTTCCCCGGGCGCTGTCCGCCG
---------+---------+---------+---------+---------+---------+ 238
OVRM1_0082_H02.b.ab1 : CCTGGACCGCGAAGTGGCCTGGGAACTGGAAGGAAGATGTTCCCCGGGCGCTGTCCGCCG
OVRM1_0061_G05.b.ab1 : CCTGGACCGCGAAGTGGCCTGGGAACTGGAAGGAAGATGTTCCCCGGGCGCTGTCCGCCG
UTR01_0058_F08.b.ab1 : CCTGGACCGCGAAGTGGCCTGGGAACTGGAAGGAAGATGTTCCCCGGGCGCTGTCCGCCG
20040204C-000710 : CCCGCGCTACTGGGCCGAGGTCCCCATCTCAACGTAGATTCTCTTTTTCCCCTCTTCTGC
---------+---------+---------+---------+---------+---------+ 298
OVRM1_0082_H02.b.ab1 : CCCGCGCTACTGGGCCGAGGTCCCCATCTCAACGTAGATTCTCTTTTTCCCCTCTTCTGC
OVRM1_0061_G05.b.ab1 : CCCGCGCTACTGGGCCGAGGTCCCCATCTCAACGTAGATTCTCTTTTTCCCCTCTTCTGC
UTR01_0058_F08.b.ab1 : CCCGCGCTACTGGGCCGAGGTCCCCATCTCAACGTAGATTCTCTTTTTCCCCTCTTCTGC
20040204C-000710 : AGGCTCGTTTCTGGCATGATGGCGCAAAGGGCCTTCCCGAATCCTTATGCAGATTTTAAC
---------+---------+---------+---------+---------+---------+ 358
OVRM1_0082_H02.b.ab1 : AGGCTCGTTTCTGGCATGATGGCGCAAAGGGCCTTCCCGAATCCTTATGCAGATTTTAAC
OVRM1_0061_G05.b.ab1 : AGGCTCGTTTCTGGCATGATGGCGCANAGGGCCTTCCCGAATCCTTATGCAGATTTTAAC
UTR01_0058_F08.b.ab1 : AGGCTCGTTTCTGGCATGATGGCGCAAAGGGCCTTCCCGAATCCTTATGCAGATTTTAAC
20040204C-000710 : AAATCCCTGGCCGAAGGCTACTTTGATTCTGCTGGGAGGCTCACTCCTGAGTTCTCACAA
---------+---------+---------+---------+---------+---------+ 418
OVRM1_0082_H02.b.ab1 : AAATCCCTGGCCGAAGGCTACTTTGATTCTGCTGGGAGGCTCACTCCTGAGTTCTCACAA
OVRM1_0061_G05.b.ab1 : AAATCCCTGGCCGAAGGCTACTTTGATTCTGCTGGGAGGCTCACTCCTGAGTTCTCACAA
UTR01_0058_F08.b.ab1 : AAATCCCTGGCCGAAGGCTACTTTGATTCTGCTGGGAGGCTCACTCCTGAGTTCTCACAA
20040204C-000710 : CGTGTGAACAATAAGATTCGAGAGCTGCTTCAGCAAATGGAGAGAGGCCTAAAATCAGCA
---------+---------+---------+---------+---------+---------+ 478
OVRM1_0082_H02.b.ab1 : CGTGTGAACAATAAGATTCGAGAGCTGCTTCAGCAAATGGAGAGAGGCCTAAAATCAGCA
OVRM1_0061_G05.b.ab1 : CGTGTGAACAATAAGATTCGAGAGCTGCTTCAGCAAATGGAGAGAGGCCTAAAATCAGCA
UTR01_0058_F08.b.ab1 : CGCGTGAACAATAAGATTCGAGAGCTTCTTCAGCAAATGGAGAGAGGCCTAAAATCAGCA
20040204C-000710 : GACCCTCGCGATGGCACTGCTTACACTGGATGGGCAGGTATCGCTGTGCTTTACTTACAC
---------+---------+---------+---------+---------+---------+ 538
OVRM1_0082_H02.b.ab1 : GACCCTCGCGATGGCACTGCTTACACTGGATGGGCAGGTATCGCTGTGCTTTACTTACAC
OVRM1_0061_G05.b.ab1 : GACCCTCGCGATGGCACTGCTTACACTGGATGGGCAGGTATCGCTGTGCTTTACTTACAC
UTR01_0058_F08.b.ab1 : GACCCTCGCGATGGCACTGCTTACACTGGATGGGCAGGTATCGCTGTGCTTTACTTACAC
20040204C-000710 : CTCTATGATGTGTTTGGGGACCCTGCCTACCTGCAGATGGCACATGGCTATGCAAAGCAA
---------+---------+---------+---------+---------+---------+ 598
OVRM1_0082_H02.b.ab1 : CTCTATGATGTGTTTGGGGACCCTGCCTACCTGCAGATGGCACATGGCTATGCAAAGCAN
OVRM1_0061_G05.b.ab1 : CTCTATGATGTGTTTGGGGACCCTGCCTACCTGCAGATGGCACATGGCTATGCAAAGCAN
UTR01_0058_F08.b.ab1 : CTCTATGATGTGTTTGGGGACCCTGCCTACCTGCAGATGGCACATGGCTATGCAAAGCAA
20040204C-000710 : AGTCTGAACTGTTTGACCAAGCGTTCCATCACCTTCCTGTGTGGTGATGCGGGCCCCCTG
---------+---------+---------+---------+---------+---------+ 658
OVRM1_0082_H02.b.ab1 : AGTCTGAACTGTTTGACCAAGCGTTCCATCACCTTCCTGTGTGGTGATGCGGGCCCCCTG
OVRM1_0061_G05.b.ab1 : AGTCTGAACTGTTTGACCAAGCGTTCCATCACCTTCCTGTGTGGTGATGCGGGCCCCCTG
UTR01_0058_F08.b.ab1 : AGTCTGAACTGTTTGACCAAGCGTTCCATCACCTTCCTGTGTGGTGATGCGGGCCCCCTG
20040204C-000710 : GCAGTGGCTGCTGTGGTGCATGACAAGATGAACAATGAGAAGCAGGCAGAAGACTGTATC
---------+---------+---------+---------+---------+---------+ 718
OVRM1_0082_H02.b.ab1 : GCAGTGGCTGCTGTGGTGCATGACAAGATGAACAATGAGAAGCCAGCAGAAGACTGTATC
OVRM1_0061_G05.b.ab1 : GCAGTGGCTGCTGTGGTGCATGACAAGATGAACAATGAGAAGCAGGCAGAAGACTGTATC
UTR01_0058_F08.b.ab1 : GCAGTGGCTGCTGTGGTGCATGACAAGATGAACAATGAGAAGCAGGCAGAAGACTGTATC
20040204C-000710 : ACCCGGCTAATTCACCTAAATAAGATTGACCCGCATGCTCCAAATGAAATGCTGTATGGA
---------+---------+---------+---------+---------+---------+ 778
OVRM1_0082_H02.b.ab1 : ACC
OVRM1_0061_G05.b.ab1 : ACCCGGCTAATTCACCTNAATNAGATTGACCCGCATGCTCCAAATGAAATGCTGTATGGA
UTR01_0058_F08.b.ab1 : ACCCGGCTAATTCACCTAAATAAGATTGACCCGCATGCTCCAAATGAAATGCTGTATGGA
20040204C-000710 : CGAATGGGCTACATCTATGCTCTTCTCTTTGTGAATAAGAACTTTGGAGTAGAAAAGATT
---------+---------+---------+---------+---------+---------+ 838
OVRM1_0082_H02.b.ab1 :
OVRM1_0061_G05.b.ab1 : CGAATGGGCTACATCTATGCTCT
UTR01_0058_F08.b.ab1 : CGAATGGGCTACATCTATGCTCTTCTCTTTGTGAATAAGAACTTTGGAGTAGAAAAGATT
20040204C-000710 : CCTCGAAGCCATATTCAGCAGATTTGTGAAACAGTCTTAACCTCTGGAGAAAACCTAGCT
---------+---------+---------+---------+---------+---------+ 898
OVRM1_0082_H02.b.ab1 :
OVRM1_0061_G05.b.ab1 :
UTR01_0058_F08.b.ab1 : CCTCGAAGCCATATTCAGCAGATTTGTGAAACAGTCTTAACCTCTGGAGAAAACCTAGCT
20040204C-000710 : AGAAAAAAAAACTTCCAGAAAAAACTCCCCTGATGTATGAAGGGAACAAAAAAATTATGT
---------+---------+---------+---------+---------+---------+ 958
OVRM1_0082_H02.b.ab1 :
OVRM1_0061_G05.b.ab1 :
UTR01_0058_F08.b.ab1 : AGAAAAAAAAACTTCCAGAAAAAACTCCCCTGATGTATGAAGGGAACAAAAAAATTATGT
20040204C-000710 : GGGGGCTGCTCTGGGCCTGGCAGGAATTTATTACTACCTGA...................
---------+---------+---------+---------+---------+---------+ 999
OVRM1_0082_H02.b.ab1 :
OVRM1_0061_G05.b.ab1 :
UTR01_0058_F08.b.ab1 : GGGGGCTGCTCTGGGCCTGGCAGGAATTTATTACTACCTGAatgcaccccaccctccagt
20040204C-000710 : ............................................................
---------+---------+---------+---------+---------+---------+ 999
OVRM1_0082_H02.b.ab1 :
OVRM1_0061_G05.b.ab1 :
UTR01_0058_F08.b.ab1 : tgacccttgcaaaagtacaaaatttgggtaaacccaattggtaaattatgtctgcccacc
20040204C-000710 : ............................................................
---------+---------+---------+---------+---------+---------+ 999
OVRM1_0082_H02.b.ab1 :
OVRM1_0061_G05.b.ab1 :
UTR01_0058_F08.b.ab1 : tgaaaattccctttcgggcaatttccccttccttgtgggggaaaaaaactccaaaatttt
20040204C-000710 : ............................................................
---------+---------+---------+---------+---------+---------+ 999
OVRM1_0082_H02.b.ab1 :
OVRM1_0061_G05.b.ab1 :
UTR01_0058_F08.b.ab1 : gcctattcccatttgggggcccccgggtttccccctgggggggaaaaatcctaaattgcc
20040204C-000710 : ............................................................
---------+---------+---------+---------+---------+---------+ 999
OVRM1_0082_H02.b.ab1 :
OVRM1_0061_G05.b.ab1 :
UTR01_0058_F08.b.ab1 : tcctttttccggggcccact