[Overview] [RefSeq] [UniGene] [Cluster & SNP] [Alignment]
Assembly Name: 20040204C-002392
Length:
994
Sequence:
[FASTA format sequence]
ACATGCGCCA CAAAAGGTTC CGATCCGGAA ACTACCCATC CTCGTTAAGC AACGAGACAG
ACCGCCTGGT ACACTGGTGC CACGGGGCGC CCGGCGTCAT CCACACGCTC ATGCAGGCGT
ACAAGGTGTT TAAGGAGGAG AAGTACCTGA GGGACGCCGT GGAGTGCAGC GACGTGATTT
GGCAGCGGGG CCTGCTGCGC AAGGGCTACG GCATCTGCCA CGGGACTGCG GGCAACGGCT
ACTCCTTCCT CTCCCTTTAC CGCCTCACGC AGGACAAGAA GTACCTCTAC CGAGCTTGCA
AGTTTGCAGA GTGGTGTCTG GAGTACGGAG CACATGGTTG CCGCATTCCC GACAGGCCCT
ACTCTCTCTT CGAAGGCATG GCCGGCGCCA TTCACTTCCT CTCCGACATC CTGGCCCCCG
AGACAGCACG GTTTCCAGCA TTTGAACTCG GCTCTTCAGA GAGGGATCCA AAGGTGCAAA
AAGACTCCTA AGGGACCCGA CGGGACCACA GGCCGCCAGG TTGCCTGGCG CCTGACACAG
AAGCCACCGT GCATCCTGAG GAAGGGAGGA CGGAGGGAGC AGAGCCCCGC AGACCCCCGC
CCCGCCAGCC TGCTGTGCTC CCCTCGCTGG TGTCAGCGTG ACGTCTCCGT GTCCAGTGCT
GCGTAATGTT TGCATGTCCC TCGGTGTTTG CTCTCCGTAG GCGTAGGTTG TTCTCAGCGG
AAGCCCTTCT CTGTCCATGA GCCCGAGCTG GCCGTGCATG AGGGCACACA GCAGCCCCTT
CTCCGTACCC AATAAAGCGG GGTGCTTCTG TATTGGCAGA CAGGACACAG GCAGGTGGTG
TCTCTCTTAT GTACCAGAAA GACTCTCTTT TAAGATGCCA TCCCAGTGTG AGACTTTTCC
CAGCATTTCC TGTGGGACCC TTTTGGGGGA GCTTGAGAGA AAGACTGCTC CAGAAATGAA
AAGAAATAGC GGAGGTAGAG GGGCTTTCGC TGGA
| Locus | Definition | Score | E value | FL | ||
|---|---|---|---|---|---|---|
 |
 | similar to LanC lantibiotic synthetase component C-like 2; testis-specific adriamycin sensitivity protein; LanC (bacterial lantibiotic synthetase component C)-like 2; G protein-coupled receptor 69B | 315 | 2e-86 | ||
|
|
| LANCL2 | LanC lantibiotic synthetase component C-like 2 (bacterial) | 315 | 2e-86 | |
|
|
| LANCL1 | LanC lantibiotic synthetase component C-like 1 (bacterial) | 244 | 7e-65 | |
|
|
| LANCL3 | FLJ42925 protein | 108 | 4e-24 |
| Locus | Definition | Score | E value | FL | ||
|---|---|---|---|---|---|---|
|
|
| Lancl2 | LanC (bacterial lantibiotic synthetase component C)-like 2 | 310 | 6e-85 | |
|
|
| Lancl1 | LanC (bacterial lantibiotic synthetase component C)-like 1 | 238 | 4e-63 | |
|
|
| Lancl3 | RIKEN cDNA 6030463G20 gene | 142 | 2e-34 |
| Definition | Score | E value | FL | ||
|---|---|---|---|---|---|
 |
 | BP144493 full-length enriched swine cDNA library, adult ovary Sus scrofa cDNA clone OVR010037H03 5', mRNA sequence | 1443 | 0.0 | |
|
|
| Homo sapiens LanC lantibiotic synthetase component C-like 2 (bacterial) (LANCL2), mRNA | 472 | e-131 | |
|
|
| Mus musculus RIKEN cDNA 1700003F10 gene (1700003F10Rik), mRNA | 258 | 5e-67 | |
|
|
| AGENCOURT_10275836 NIH_MGC_82 Homo sapiens cDNA clone IMAGE:6592840 5', mRNA sequence | 42.1 | 0.054 | |
|
|
| Homo sapiens transmembrane 4 superfamily member tetraspan NET-5 (NET-5), mRNA | 42.1 | 0.054 | |
|
|
| 591841 MARC 6BOV Bos taurus cDNA 5', mRNA sequence | 40.1 | 0.22 | |
|
|
| Homo sapiens KIAA0602 protein, mRNA (cDNA clone IMAGE:4824255), partial cds | 38.2 | 0.85 | |
|
|
| Homo sapiens cDNA clone IMAGE:5268504, partial cds | 38.2 | 0.85 | |
|
|
| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130073D18 product:unknown EST, full insert sequence | 38.2 | 0.85 | |
|
|
| BX362771 Homo sapiens HELA CELLS COT 25-NORMALIZED Homo sapiens cDNA clone CS0DK003YP12 3-PRIME, mRNA sequence | 36.2 | 3.4 |
|
20040204C-002392 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
SPL01_0057_B02.b.ab1 : nnnnggcatgtgacttnacagtttgtcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
OVR01_0037_H03.b.ab1 : gaggctcttggtgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
TCH01_0028_D05.b.ab1 :
20040204C-002392 : ....................ACATGCGCCACAAAAGGTTCCGATCCGGAAACTACCCATC
---------+---------+---------+---------+---------+---------+ 40
SPL01_0057_B02.b.ab1 : xxxxxxxxxxxxxxxxxxxxACATGCGCCACAAAAGGTTCCGATCCGGAAACTACCCATC
OVR01_0037_H03.b.ab1 : xxxxxxxxxxxxxxxxxxxxxxctgttcaactggAGGTTCCGATCCGGAAACTACCCATC
TCH01_0028_D05.b.ab1 :
20040204C-002392 : CTCGTTAAGCAACGAGACAGACCGCCTGGTACACTGGTGCCACGGGGCGCCCGGCGTCAT
---------+---------+---------+---------+---------+---------+ 100
SPL01_0057_B02.b.ab1 : CTCGTTAAGCAACGAGACAGACCGCCTGGTACACTGGTGCCACGGGGCGCCCGGCGTCAT
OVR01_0037_H03.b.ab1 : CTCGTTAAGCAACGAGACAGACCGCCTGGTACACTGGTGCCACGGGGCGCCCGGCGTCAT
TCH01_0028_D05.b.ab1 :
20040204C-002392 : CCACACGCTCATGCAGGCGTACAAGGTGTTTAAGGAGGAGAAGTACCTGAGGGACGCCGT
---------+---------+---------+---------+---------+---------+ 160
SPL01_0057_B02.b.ab1 : CCACACGCTCATGCAGGCGTACAAGGTGTTTAAGGAGGAGAAGTACCTGAGGGACGCCGT
OVR01_0037_H03.b.ab1 : CCACACGCTCATGCAGGCGTACAAGGTGTTTAAGGAGGAGAAGTACCTGAGGGACGCCGT
TCH01_0028_D05.b.ab1 : nntttcagctgtgacatgac
20040204C-002392 : GGAGTGCAGCGACGTGATTTGGCAGCGGGGCCTGCTGCGCAAGGGCTACGGCATCTGCCA
---------+---------+---------+---------+---------+---------+ 220
SPL01_0057_B02.b.ab1 : GGAGTGCAGCGACGTGATTTGGCAGCGGGGCCTGCTGCGCAAGGGCTACGGCATCTGCCA
OVR01_0037_H03.b.ab1 : GGAGTGCAGCGACGTGATTTGGCAGCGGGGCCTGCTGCGCAAGGGCTACGGCATCTGCCA
TCH01_0028_D05.b.ab1 : agtttgtacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxA
20040204C-002392 : CGGGACTGCGGGCAACGGCTACTCCTTCCTCTCCCTTTACCGCCTCACGCAGGACAAGAA
---------+---------+---------+---------+---------+---------+ 280
SPL01_0057_B02.b.ab1 : CGGGACTGCGGGCAACGGCTACTCCTTCCTCTCCCTTTACCGCCTCACGCAGGACAAGAA
OVR01_0037_H03.b.ab1 : CGGGACTGCGGGCAACGGCTACTCCTTCCTCTCCCTTTACCGCCTCACGCAGGACAAGAA
TCH01_0028_D05.b.ab1 : CGGGACTGCGGGCAACGGCTACTCCTTCCTCTCCCTTTACCGCCTCACGCAGGACAAGAA
20040204C-002392 : GTACCTCTACCGAGCTTGCAAGTTTGCAGAGTGGTGTCTGGAGTACGGAGCACATGGTTG
---------+---------+---------+---------+---------+---------+ 340
SPL01_0057_B02.b.ab1 : GTACCTCTACCGAGCTTGCAAGTTTGCAGAGTGGTGTCTGGAGTACGGAGCACATGGTTG
OVR01_0037_H03.b.ab1 : GTACCTCTACCGAGCTTGCAAGTTTGCAGAGTGGTGTCTGGAGTACGGAGCACATGGTTG
TCH01_0028_D05.b.ab1 : GTACCTCTACCGAGCTTGCAAGTTTGCAGAGTGGTGTCTGGAGTACGGAGCACATGGTTG
20040204C-002392 : CCGCATTCCCGACAGGCCCTACTCTCTCTTCGAAGGCATGGCCGGCGCCATTCACTTCCT
---------+---------+---------+---------+---------+---------+ 400
SPL01_0057_B02.b.ab1 : CCGCATTCCCGACAGGCCCTACTCTCTCTTCGAAGGCATGGCCGGCGCCATTCACTTCCT
OVR01_0037_H03.b.ab1 : CCGCATTCCCGACAGGCCCTACTCTCTCTTCGAAGGCATGGCCGGCGCCATTCACTTCCT
TCH01_0028_D05.b.ab1 : CCGCATTCCCGACAGGCCCTACTCTCTCTTCGAAGGCATGGCCGGCGCCATTCACTTCCT
20040204C-002392 : CTCCGACATCCTGGCCCCCGAGACAGCACGGTTTCCAGCATTTGAACTCGGCTCTTCAGA
---------+---------+---------+---------+---------+---------+ 460
SPL01_0057_B02.b.ab1 : CTCCGACATCCTGGCCCCCGAGACAGCACGGTTTCCAGCATTTGAACTCGGCTCTTCAGA
OVR01_0037_H03.b.ab1 : CTCCGACATCCTGGCCCCCGAGACAGCACGGTTTCCAGCATTTGAACTCGGCTCTTCAGA
TCH01_0028_D05.b.ab1 : CTCCGACATCCTGGCCCCCGAGACAGCACGGTTTCCAGCATTTGAACTCGGCTCTTCAGA
20040204C-002392 : GAGGGATCCAAAGGTGCAAAAAGACTCCTAAGGGACCCGACGGGACCACAGGCCGCCAGG
---------+---------+---------+---------+---------+---------+ 520
SPL01_0057_B02.b.ab1 : GAGGGATCCAAAGGTGCAAAAAGACTCCTAAGGGACCCGACGGGACCACAGGCCGCCAGG
OVR01_0037_H03.b.ab1 : GAGGGATCCAAAGGTGCAAAAAGACTCCTAAGGGACCCGACGGGACCACAGGCCGCCAGG
TCH01_0028_D05.b.ab1 : GAGGGATCCAAAGGTGCAAAAAGACTCCTAAGGGACCCGACGGGACCACAGGCCGCCAGG
20040204C-002392 : TTGCCTGGCGCCTGACACAGAAGCCACCGTGCATCCTGAGGAAGGGAGGACGGAGGGAGC
---------+---------+---------+---------+---------+---------+ 580
SPL01_0057_B02.b.ab1 : TTGCCTGGCGCCTGACACAGAAGCCACCGTGCATCCTGAGGAAGGGAGGACGGAGGGAGC
OVR01_0037_H03.b.ab1 : TTGCCTGGCGCCTGACACAGAAGCCACCGTGCATCCTGAGGAAGGGAGGACGGAGGGAGC
TCH01_0028_D05.b.ab1 : TTGCCTGGCGCCTGACACAGAAGCCACCGTGCATCCTGAGGAAGGGAGGACGGAGGGAGC
20040204C-002392 : AGAGCCCCGCAGACCCCCGCCCCGCCAGCCTGCTGTG******CTCCCCTCGCTGGTGTC
---------+---------+---------+---------+---------+---------+ 634
SPL01_0057_B02.b.ab1 : AGAGCCCCGCAGACCCCCGCCCCGCCAGCCTGCTGTG******CTCCCCTCGCTGGTGTC
OVR01_0037_H03.b.ab1 : AGAGCCCCGCAGACCCCCGCCCCGCCAGCCTGCTGTGACCGTGCTCCCCTCGCTGGTGTC
TCH01_0028_D05.b.ab1 : AGAGCCCCGCAGACCCCCGCCCCGCCAGCCTGCTGTG******CTCCCCTCGCTGGTGTC
20040204C-002392 : AGCGTGACGTCTCCGTGTCCAGTGCTGCGTAATGTTTGCATGTCCCTCGGTGTTTGCTCT
---------+---------+---------+---------+---------+---------+ 694
SPL01_0057_B02.b.ab1 : AGCGTGACGTCTCCGTGTCCAGTGCTGCGTAATGTTTGCATGTCCCTCGGTGTTTGCTCT
OVR01_0037_H03.b.ab1 : AGCGTGACGTCTCCGTGTCCAGTGCTGCGTAATGTTTGCATGTCCCTCGGTGTTTGCTCT
TCH01_0028_D05.b.ab1 : AGCGTGACGTCTCCGTGTCCAGTGCTGCGTAATGTTTGCATGTCCCTCGGTGTTTGCTCT
20040204C-002392 : CCGTAGGCGTAGGTTGTTCTCAGCGGAAGCCCTTCTCTGTCCATGAG*CCCGAGCTGGCC
---------+---------+---------+---------+---------+---------+ 753
SPL01_0057_B02.b.ab1 : CCGTANGCGTANGTTGTTCTCAGCGGAAGCCCTTCTCTGTCCATGAGCCCCGAGCTGGCC
OVR01_0037_H03.b.ab1 : CCGTAGGCGTAGGTTGTTCTCAGCGGAAGCCCTTCTCTGTCCATGAG*CCCGAGCTGGCC
TCH01_0028_D05.b.ab1 : CCGTAGGCGTAGGTTGTTCTCAGCGGAAGCCCTTCTCTGTCCATGAG*CCCGAGCTGGCC
20040204C-002392 : GTGCATGAGGGCACACAGCAGCCCCTTCTCCGTACCCAATAAAGCGGGGTGCTTCTGTAT
---------+---------+---------+---------+---------+---------+ 813
SPL01_0057_B02.b.ab1 : CTGCATGAAGGCACACAGCAGCCCCTTCTCCGTACCCAATAAAGCGGGGTGCTTCTGTAT
OVR01_0037_H03.b.ab1 : GTGCATGAGGGCACACAGCAGCCCCTTCTCCGTACCCAATAAAGCGGGGTGCTTCTGTAT
TCH01_0028_D05.b.ab1 : GTGCATGAGGGCACACAGCAGCCCCTTCTCCGTACCCAATAAAGCGGGGTGCTTCTGTAT
20040204C-002392 : TGGCAGACAGGACACAGGCAGGTGGTGTCTCTCTTATGTACCAGAAAGACTCTCTTTTAA
---------+---------+---------+---------+---------+---------+ 873
SPL01_0057_B02.b.ab1 : TGGcagacggacaccagcagggggttgtctctccttagttaccagaaagactctcctttt
OVR01_0037_H03.b.ab1 : TGGAAAACAGGACACAGGCAAGTGGTGTCTCTCTTATGTACCAAAAAAACTCTCTTTTAA
TCH01_0028_D05.b.ab1 : TGGCAGACAGGACACAGGCAGGTGGTGTCTCTCTTATGTACCAGAAAGACTCTCTTTTAA
20040204C-002392 : GATGCCATCCCAGTGTGAGACTTTTCCCAGCATTTCCT*GTGGGACCCTTTTGGGGGAGC
---------+---------+---------+---------+---------+---------+ 932
SPL01_0057_B02.b.ab1 : agaatgccatcccaggggggaaacttttccccagcattttctggtgggaacctttttggg
OVR01_0037_H03.b.ab1 : GATGCCATCCCAGTGTGAAACTTTTCCCA*CATTTCCTTGTGGAACCCTTTTGGGGGgag
TCH01_0028_D05.b.ab1 : GATGCCATCCCAGTGTGAGACTTTTCCCAGCATTTCCT*GTGGGACCCTTTTGGGGGAGC
20040204C-002392 : TTGAGAGAAAGACTGCTCCAGAAATGAAAAGAAATAGCGGAGGTAGAGGGGCTTTCGCTG
---------+---------+---------+---------+---------+---------+ 992
SPL01_0057_B02.b.ab1 : ggaaacttgaaaaaaaaaacttgctcccaaaaatgaaaaaaaaattaccgaaaggtaaaa
OVR01_0037_H03.b.ab1 : ctttgaaaaaaaaattgctcccaaaaatggaaaaaaaaaaccggaaggtaaaaggggttt
TCH01_0028_D05.b.ab1 : TTGAGAGAAAGACTGCTCCAGAAATGAAAAGAAATAGCGGAGGTAGAGGGGCTTTCGCTG
20040204C-002392 : GA..........................................................
---------+---------+---------+---------+---------+---------+ 994
SPL01_0057_B02.b.ab1 : gggggctttctccctggaaaggggggccgggggaacact
OVR01_0037_H03.b.ab1 : ttccttggaaggggggtttggggaagcctttggccccccgtttggaaccaaccccctctt
TCH01_0028_D05.b.ab1 : GAggggggctggggagccttggccccagttggaccagcccctctgtgggtcttatgctca
20040204C-002392 : ............................................................
---------+---------+---------+---------+---------+---------+ 994
SPL01_0057_B02.b.ab1 :
OVR01_0037_H03.b.ab1 : tgggggttttttttggttcctcccttttcggggggtttttaggagaaaccccaaaggggg
TCH01_0028_D05.b.ab1 : ccttcgtggttttaggaagcccgaagggggcgcggggcaactctgccgggctcccatcgc
20040204C-002392 : ............................................................
---------+---------+---------+---------+---------+---------+ 994
SPL01_0057_B02.b.ab1 :
OVR01_0037_H03.b.ab1 : gggccccgggtggggaaacttttctttcccccggggtttccccccccctttccccacagg
TCH01_0028_D05.b.ab1 : aggctctttatgtggaattccaaaccttgaaatccagggcagtccgtggcctggggaggg
20040204C-002392 : ............................................................
---------+---------+---------+---------+---------+---------+ 994
SPL01_0057_B02.b.ab1 :
OVR01_0037_H03.b.ab1 : ggctcttttttttttttaggggggtgtaaaaaaaaatttttt
TCH01_0028_D05.b.ab1 : aaccaatggcaccggtgacgggggtttgggggaacctttgtatgtggcacaggcaaacaa
20040204C-002392 : ............................................................
---------+---------+---------+---------+---------+---------+ 994
SPL01_0057_B02.b.ab1 :
OVR01_0037_H03.b.ab1 :
TCH01_0028_D05.b.ab1 : gccatatggcgtgtttgtactaaaagaatggacctccatttatcacatcctaacgtctgt
20040204C-002392 : ............................................................
---------+---------+---------+---------+---------+---------+ 994
SPL01_0057_B02.b.ab1 :
OVR01_0037_H03.b.ab1 :
TCH01_0028_D05.b.ab1 : tccagttcacaaaatacttccgaaggggcataacaaaaaaattccgctttcccggccccc
20040204C-002392 : ............................................................
---------+---------+---------+---------+---------+---------+ 994
SPL01_0057_B02.b.ab1 :
OVR01_0037_H03.b.ab1 :
TCH01_0028_D05.b.ab1 : caattaattttttaaattcgaaaannacnaaaaaaaaaaaaaanggggccctgttcgaac
20040204C-002392 : ............................................................
---------+---------+---------+---------+---------+---------+ 994
SPL01_0057_B02.b.ab1 :
OVR01_0037_H03.b.ab1 :
TCH01_0028_D05.b.ab1 : tgggccggcccctctaaaatcctgggggccactttct
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