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[Overview] [RefSeq] [UniGene] [Cluster & SNP] [Alignment]

Assembly Name:  20050322C-007257

Length: 993

Sequence:  [FASTA format sequence]
CATGCGCCAC AAAAGGTTCC GATCCGGAAA CTACCCATCC TCGTTAAGCA ACGAGACAGA
CCGCCTGGTA CACTGGTGCC ACGGGGCGCC CGGCGTCATC CACACGCTCA TGCAGGCGTA
CAAGGTGTTT AAGGAGGAGA AGTACCTGAG GGACGCCGTG GAGTGCAGCG ACGTGATTTG
GCAGCGGGGC CTGCTGCGCA AGGGCTACGG CATCTGCCAC GGGACTGCGG GCAACGGCTA
CTCCTTCCTC TCCCTTTACC GCCTCACGCA GGACAAGAAG TACCTCTACC GAGCTTGCAA
GTTTGCAGAG TGGTGTCTGG AGTACGGAGC ACATGGTTGC CGCATTCCCG ACAGGCCCTA
CTCTCTCTTC GAAGGCATGG CCGGCGCCAT TCACTTCCTC TCCGACATCC TGGCCCCCGA
GACAGCACGG TTTCCAGCAT TTGAACTCGG CTCTTCAGAG AGGGATCCAA AGGTGCAAAA
AGACTCCTAA GGGACCCGAC GGGACCACAG GCCGCCAGGT TGCCTGGCGC CTGACACAGA
AGCCACCGTG CATCCTGAGG AAGGGAGGAC GGAGGGAGCA GAGCCCCGCA GACCCCCGCC
CCGCCAGCCT GCTGTGCTCC CCTCGCTGGT GTCAGCGTGA CGTCTCCGTG TCCAGTGCTG
CGTAATGTTT GCATGTCCCT CGGTGTTTGC TCTCCGTAGG CGTAGGTTGT TCTCAGCGGA
AGCCCTTCTC TGTCCATGAG CCCGAGCTGG CCGTGCATGA GGGCACACAG CAGCCCCTTC
TCCGTACCCA ATAAAGCGGG GTGCTTCTGT ATTGGCAGAC AGGACACAGG CAGGTGGTGT
CTCTCTTATG TACCAGAAAG ACTCTCTTTT AAGATGCCAT CCCAGTGTGA GACTTTTCCC
AGCATTTCCT GTGGGACCCT TTTGGGGGAG CTTGAGAGAA AGACTGCTCC AGAAATGAAA
AGAAATAGCG GAGGTAGAGG GGCTTTCGCT GGA


Assembly Overview:      TOP


BLAST on RefSeq (Human):      TOP
LocusDefinitionScoreE valueFL
Nucleotide ProteinLANCL2LanC lantibiotic synthetase component C-like 2 (bacterial)3152e-86
Nucleotide ProteinLANCL1LanC lantibiotic synthetase component C-like 1 (bacterial)2447e-65
Nucleotide ProteinLANCL3LanC lantibiotic synthetase component C-like 3 (bacterial)1085e-24


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Nucleotide ProteinLancl2LanC (bacterial lantibiotic synthetase component C)-like 23107e-85
Nucleotide ProteinLancl1LanC (bacterial lantibiotic synthetase component C)-like 12384e-63
Nucleotide ProteinLancl3LanC lantibiotic synthetase component C-like 3 (bacterial)1422e-34


BLAST on UniGene:      TOP
DefinitionScoreE valueFL
UniGene GenBank386896 MARC 2PIG Sus scrofa cDNA 5', mRNA sequence9500.0
UniGene GenBankBovGen_06533 normal cattle brain Bos taurus cDNA clone RZPDp1056M0826Q 5', mRNA sequence502e-140
UniGene GenBankHomo sapiens LanC lantibiotic synthetase component C-like 2 (bacterial) (LANCL2), mRNA472e-131
UniGene GenBank948948 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence1454e-33
UniGene GenBankHomo sapiens phosphofurin acidic cluster sorting protein 1-like, mRNA (cDNA clone IMAGE:4824255)38.20.70
UniGene GenBankHomo sapiens cDNA clone IMAGE:5268504, partial cds38.20.70
UniGene GenBankHomo sapiens mRNA; cDNA DKFZp761H0610 (from clone DKFZp761H0610)38.20.70
UniGene GenBankMus musculus interleukin-18 binding protein c precursor (IL18BP) mRNA, complete cds38.20.70
UniGene GenBankxn15c07.y1 NCI_CGAP_Li5 Homo sapiens cDNA clone IMAGE:2693772 5', mRNA sequence36.22.8
UniGene GenBankHomo sapiens cDNA FLJ32873 fis, clone TESTI2003998, weakly similar to T-CELL RECEPTOR BETA CHAIN ANA 1136.22.8


Assembly Members: 3      TOP
LibraryPlateLoc.Read NameAccession
OVR010037H03OVR01_0037_H03.b.ab1BP144493
SPL010057B02SPL01_0057_B02.b.ab1CJ018115
TCH010028D05TCH01_0028_D05.b.ab1CJ024510

  

Alignment:      TOP

20050322C-007257     : ............................................................
---------+---------+---------+---------+---------+---------+ 0
SPL01_0057_B02.b.ab1 : nnnnggcatgtgacttnacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
OVR01_0037_H03.b.ab1 : gaggctcttggtgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
TCH01_0028_D05.b.ab1 :
20050322C-007257 : .....................CATGCGCCACAAAAGGTTCCGATCCGGAAACTACCCATC
---------+---------+---------+---------+---------+---------+ 39
SPL01_0057_B02.b.ab1 : xxxxxxxxxxxxxxxxxxxxxCATGCGCCACAAAAGGTTCCGATCCGGAAACTACCCATC
OVR01_0037_H03.b.ab1 : xxxxxxxxxxxxxxxxxxxxxxctgttcaactggAGGTTCCGATCCGGAAACTACCCATC
TCH01_0028_D05.b.ab1 :
20050322C-007257 : CTCGTTAAGCAACGAGACAGACCGCCTGGTACACTGGTGCCACGGGGCGCCCGGCGTCAT
---------+---------+---------+---------+---------+---------+ 99
SPL01_0057_B02.b.ab1 : CTCGTTAAGCAACGAGACAGACCGCCTGGTACACTGGTGCCACGGGGCGCCCGGCGTCAT
OVR01_0037_H03.b.ab1 : CTCGTTAAGCAACGAGACAGACCGCCTGGTACACTGGTGCCACGGGGCGCCCGGCGTCAT
TCH01_0028_D05.b.ab1 :
20050322C-007257 : CCACACGCTCATGCAGGCGTACAAGGTGTTTAAGGAGGAGAAGTACCTGAGGGACGCCGT
---------+---------+---------+---------+---------+---------+ 159
SPL01_0057_B02.b.ab1 : CCACACGCTCATGCAGGCGTACAAGGTGTTTAAGGAGGAGAAGTACCTGAGGGACGCCGT
OVR01_0037_H03.b.ab1 : CCACACGCTCATGCAGGCGTACAAGGTGTTTAAGGAGGAGAAGTACCTGAGGGACGCCGT
TCH01_0028_D05.b.ab1 : nntttcagctgtgacatgac
20050322C-007257 : GGAGTGCAGCGACGTGATTTGGCAGCGGGGCCTGCTGCGCAAGGGCTACGGCATCTGCCA
---------+---------+---------+---------+---------+---------+ 219
SPL01_0057_B02.b.ab1 : GGAGTGCAGCGACGTGATTTGGCAGCGGGGCCTGCTGCGCAAGGGCTACGGCATCTGCCA
OVR01_0037_H03.b.ab1 : GGAGTGCAGCGACGTGATTTGGCAGCGGGGCCTGCTGCGCAAGGGCTACGGCATCTGCCA
TCH01_0028_D05.b.ab1 : agtttgtacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxA
20050322C-007257 : CGGGACTGCGGGCAACGGCTACTCCTTCCTCTCCCTTTACCGCCTCACGCAGGACAAGAA
---------+---------+---------+---------+---------+---------+ 279
SPL01_0057_B02.b.ab1 : CGGGACTGCGGGCAACGGCTACTCCTTCCTCTCCCTTTACCGCCTCACGCAGGACAAGAA
OVR01_0037_H03.b.ab1 : CGGGACTGCGGGCAACGGCTACTCCTTCCTCTCCCTTTACCGCCTCACGCAGGACAAGAA
TCH01_0028_D05.b.ab1 : CGGGACTGCGGGCAACGGCTACTCCTTCCTCTCCCTTTACCGCCTCACGCAGGACAAGAA
20050322C-007257 : GTACCTCTACCGAGCTTGCAAGTTTGCAGAGTGGTGTCTGGAGTACGGAGCACATGGTTG
---------+---------+---------+---------+---------+---------+ 339
SPL01_0057_B02.b.ab1 : GTACCTCTACCGAGCTTGCAAGTTTGCAGAGTGGTGTCTGGAGTACGGAGCACATGGTTG
OVR01_0037_H03.b.ab1 : GTACCTCTACCGAGCTTGCAAGTTTGCAGAGTGGTGTCTGGAGTACGGAGCACATGGTTG
TCH01_0028_D05.b.ab1 : GTACCTCTACCGAGCTTGCAAGTTTGCAGAGTGGTGTCTGGAGTACGGAGCACATGGTTG
20050322C-007257 : CCGCATTCCCGACAGGCCCTACTCTCTCTTCGAAGGCATGGCCGGCGCCATTCACTTCCT
---------+---------+---------+---------+---------+---------+ 399
SPL01_0057_B02.b.ab1 : CCGCATTCCCGACAGGCCCTACTCTCTCTTCGAAGGCATGGCCGGCGCCATTCACTTCCT
OVR01_0037_H03.b.ab1 : CCGCATTCCCGACAGGCCCTACTCTCTCTTCGAAGGCATGGCCGGCGCCATTCACTTCCT
TCH01_0028_D05.b.ab1 : CCGCATTCCCGACAGGCCCTACTCTCTCTTCGAAGGCATGGCCGGCGCCATTCACTTCCT
20050322C-007257 : CTCCGACATCCTGGCCCCCGAGACAGCACGGTTTCCAGCATTTGAACTCGGCTCTTCAGA
---------+---------+---------+---------+---------+---------+ 459
SPL01_0057_B02.b.ab1 : CTCCGACATCCTGGCCCCCGAGACAGCACGGTTTCCAGCATTTGAACTCGGCTCTTCAGA
OVR01_0037_H03.b.ab1 : CTCCGACATCCTGGCCCCCGAGACAGCACGGTTTCCAGCATTTGAACTCGGCTCTTCAGA
TCH01_0028_D05.b.ab1 : CTCCGACATCCTGGCCCCCGAGACAGCACGGTTTCCAGCATTTGAACTCGGCTCTTCAGA
20050322C-007257 : GAGGGATCCAAAGGTGCAAAAAGACTCCTAAGGGACCCGACGGGACCACAGGCCGCCAGG
---------+---------+---------+---------+---------+---------+ 519
SPL01_0057_B02.b.ab1 : GAGGGATCCAAAGGTGCAAAAAGACTCCTAAGGGACCCGACGGGACCACAGGCCGCCAGG
OVR01_0037_H03.b.ab1 : GAGGGATCCAAAGGTGCAAAAAGACTCCTAAGGGACCCGACGGGACCACAGGCCGCCAGG
TCH01_0028_D05.b.ab1 : GAGGGATCCAAAGGTGCAAAAAGACTCCTAAGGGACCCGACGGGACCACAGGCCGCCAGG
20050322C-007257 : TTGCCTGGCGCCTGACACAGAAGCCACCGTGCATCCTGAGGAAGGGAGGACGGAGGGAGC
---------+---------+---------+---------+---------+---------+ 579
SPL01_0057_B02.b.ab1 : TTGCCTGGCGCCTGACACAGAAGCCACCGTGCATCCTGAGGAAGGGAGGACGGAGGGAGC
OVR01_0037_H03.b.ab1 : TTGCCTGGCGCCTGACACAGAAGCCACCGTGCATCCTGAGGAAGGGAGGACGGAGGGAGC
TCH01_0028_D05.b.ab1 : TTGCCTGGCGCCTGACACAGAAGCCACCGTGCATCCTGAGGAAGGGAGGACGGAGGGAGC
20050322C-007257 : AGAGCCCCGCAGACCCCCGCCCCGCCAGCCTGCTGTG******CTCCCCTCGCTGGTGTC
---------+---------+---------+---------+---------+---------+ 633
SPL01_0057_B02.b.ab1 : AGAGCCCCGCAGACCCCCGCCCCGCCAGCCTGCTGTG******CTCCCCTCGCTGGTGTC
OVR01_0037_H03.b.ab1 : AGAGCCCCGCAGACCCCCGCCCCGCCAGCCTGCTGTGACCGTGCTCCCCTCGCTGGTGTC
TCH01_0028_D05.b.ab1 : AGAGCCCCGCAGACCCCCGCCCCGCCAGCCTGCTGTG******CTCCCCTCGCTGGTGTC
20050322C-007257 : AGCGTGACGTCTCCGTGTCCAGTGCTGCGTAATGTTTGCATGTCCCTCGGTGTTTGCTCT
---------+---------+---------+---------+---------+---------+ 693
SPL01_0057_B02.b.ab1 : AGCGTGACGTCTCCGTGTCCAGTGCTGCGTAATGTTTGCATGTCCCTCGGTGTTTGCTCT
OVR01_0037_H03.b.ab1 : AGCGTGACGTCTCCGTGTCCAGTGCTGCGTAATGTTTGCATGTCCCTCGGTGTTTGCTCT
TCH01_0028_D05.b.ab1 : AGCGTGACGTCTCCGTGTCCAGTGCTGCGTAATGTTTGCATGTCCCTCGGTGTTTGCTCT
20050322C-007257 : CCGTAGGCGTAGGTTGTTCTCAGCGGAAGCCCTTCTCTGTCCATGAG*CCCGAGCTGGCC
---------+---------+---------+---------+---------+---------+ 752
SPL01_0057_B02.b.ab1 : CCGTANGCGTANGTTGTTCTCAGCGGAAGCCCTTCTCTGTCCATGAGCCCCGAGCTGGCC
OVR01_0037_H03.b.ab1 : CCGTAGGCGTAGGTTGTTCTCAGCGGAAGCCCTTCTCTGTCCATGAG*CCCGAGCTGGCC
TCH01_0028_D05.b.ab1 : CCGTAGGCGTAGGTTGTTCTCAGCGGAAGCCCTTCTCTGTCCATGAG*CCCGAGCTGGCC
20050322C-007257 : GTGCATGAGGGCACACAGCAGCCCCTTCTCCGTACCCAATAAAGCGGGGTGCTTCTGTAT
---------+---------+---------+---------+---------+---------+ 812
SPL01_0057_B02.b.ab1 : CTGCATGAAGGCACACAGCAGCCCCTTCTCCGTACCCAATAAAGCGGGGTGCTTCTGTAT
OVR01_0037_H03.b.ab1 : GTGCATGAGGGCACACAGCAGCCCCTTCTCCGTACCCAATAAAGCGGGGTGCTTCTGTAT
TCH01_0028_D05.b.ab1 : GTGCATGAGGGCACACAGCAGCCCCTTCTCCGTACCCAATAAAGCGGGGTGCTTCTGTAT
20050322C-007257 : TGGCAGACAGGACACAGGCAGGTGGTGTCTCTCTTATGTACCAGAAAGACTCTCTTTTAA
---------+---------+---------+---------+---------+---------+ 872
SPL01_0057_B02.b.ab1 : TGGcagacggacaccagcagggggttgtctctccttagttaccagaaagactctcctttt
OVR01_0037_H03.b.ab1 : TGGAAAACAGGACACAGGCAAGTGGTGTCTCTCTTATGTACCAAAAAAACTCTCTTTTAA
TCH01_0028_D05.b.ab1 : TGGCAGACAGGACACAGGCAGGTGGTGTCTCTCTTATGTACCAGAAAGACTCTCTTTTAA
20050322C-007257 : GATGCCATCCCAGTGTGAGACTTTTCCCAGCATTTCCT*GTGGGACCCTTTTGGGGGAGC
---------+---------+---------+---------+---------+---------+ 931
SPL01_0057_B02.b.ab1 : agaatgccatcccaggggggaaacttttccccagcattttctggtgggaacctttttggg
OVR01_0037_H03.b.ab1 : GATGCCATCCCAGTGTGAAACTTTTCCCA*CATTTCCTTGTGGAACCCTTTTGGGGGgag
TCH01_0028_D05.b.ab1 : GATGCCATCCCAGTGTGAGACTTTTCCCAGCATTTCCT*GTGGGACCCTTTTGGGGGAGC
20050322C-007257 : TTGAGAGAAAGACTGCTCCAGAAATGAAAAGAAATAGCGGAGGTAGAGGGGCTTTCGCTG
---------+---------+---------+---------+---------+---------+ 991
SPL01_0057_B02.b.ab1 : ggaaacttgaaaaaaaaaacttgctcccaaaaatgaaaaaaaaattaccgaaaggtaaaa
OVR01_0037_H03.b.ab1 : ctttgaaaaaaaaattgctcccaaaaatggaaaaaaaaaaccggaaggtaaaaggggttt
TCH01_0028_D05.b.ab1 : TTGAGAGAAAGACTGCTCCAGAAATGAAAAGAAATAGCGGAGGTAGAGGGGCTTTCGCTG
20050322C-007257 : GA..........................................................
---------+---------+---------+---------+---------+---------+ 993
SPL01_0057_B02.b.ab1 : gggggctttctccctggaaaggggggccgggggaacact
OVR01_0037_H03.b.ab1 : ttccttggaaggggggtttggggaagcctttggccccccgtttggaaccaaccccctctt
TCH01_0028_D05.b.ab1 : GAggggggctggggagccttggccccagttggaccagcccctctgtgggtcttatgctca
20050322C-007257 : ............................................................
---------+---------+---------+---------+---------+---------+ 993
SPL01_0057_B02.b.ab1 :
OVR01_0037_H03.b.ab1 : tgggggttttttttggttcctcccttttcggggggtttttaggagaaaccccaaaggggg
TCH01_0028_D05.b.ab1 : ccttcgtggttttaggaagcccgaagggggcgcggggcaactctgccgggctcccatcgc
20050322C-007257 : ............................................................
---------+---------+---------+---------+---------+---------+ 993
SPL01_0057_B02.b.ab1 :
OVR01_0037_H03.b.ab1 : gggccccgggtggggaaacttttctttcccccggggtttccccccccctttccccacagg
TCH01_0028_D05.b.ab1 : aggctctttatgtggaattccaaaccttgaaatccagggcagtccgtggcctggggaggg
20050322C-007257 : ............................................................
---------+---------+---------+---------+---------+---------+ 993
SPL01_0057_B02.b.ab1 :
OVR01_0037_H03.b.ab1 : ggctcttttttttttttaggggggtgtaaaaaaaaatttttt
TCH01_0028_D05.b.ab1 : aaccaatggcaccggtgacgggggtttgggggaacctttgtatgtggcacaggcaaacaa
20050322C-007257 : ............................................................
---------+---------+---------+---------+---------+---------+ 993
SPL01_0057_B02.b.ab1 :
OVR01_0037_H03.b.ab1 :
TCH01_0028_D05.b.ab1 : gccatatggcgtgtttgtactaaaagaatggacctccatttatcacatcctaacgtctgt
20050322C-007257 : ............................................................
---------+---------+---------+---------+---------+---------+ 993
SPL01_0057_B02.b.ab1 :
OVR01_0037_H03.b.ab1 :
TCH01_0028_D05.b.ab1 : tccagttcacaaaatacttccgaaggggcataacaaaaaaattccgctttcccggccccc
20050322C-007257 : ............................................................
---------+---------+---------+---------+---------+---------+ 993
SPL01_0057_B02.b.ab1 :
OVR01_0037_H03.b.ab1 :
TCH01_0028_D05.b.ab1 : caattaattttttaaattcgaaaannacnaaaaaaaaaaaaaanggggccctgttcgaac
20050322C-007257 : ............................................................
---------+---------+---------+---------+---------+---------+ 993
SPL01_0057_B02.b.ab1 :
OVR01_0037_H03.b.ab1 :
TCH01_0028_D05.b.ab1 : tgggccggcccctctaaaatcctgggggccactttct