Notes

Type

This refers to the breeds that included the SNP.

W: Detected only in western breeds.
M: Detected only in Meishan breed.
B: Detected between western and Meishan breeds.
O: Other (detected in both western and Meishan breeds).

AA

This refers to the effect of the SNP on the coding amino acid.

N: Non-synonymous. The SNP is thought to change the coding amino acid.
S: Synonymous. The SNP is not thought to change the coding amino acid.
-: Cannot be determined. Influence of the SNP cannot be determined 
   because the reading frame cannot be estimated.

FL

This indicates whether he contigs estimated to include the entire CDS region of the corresponding RefSeq sequence. Presumption of a full-length CDS is omitted if the BLAST score is less than 50.