[Overview] [RefSeq] [Assembly & SNP] [Alignment]
Assembly Name: 20060611C-000229
Length:
1,211
Sequence:
[FASTA format sequence]
CTCGACCCCG ACGCCGCTGC CGCCGCAGGC CCCTCCACGC CCACACCCCC TACCCACTGC
CCAGCCATGG AGGCCATCAA GAAGAAGATG CAGATGCTGA AGCTGGACAA GGAGAACGCC
ATCGACCGGG CCGAGCAGGC GGAGTCGGAT AAGAAAGCTG CTGAGGAGAA GTGCAAGCAG
GTGGAGGAGG AGCTGACGCA CCTCCAGAAG AAGCTGAAGG GGACAGAGGA TGAGCTGGAC
AAATACTCCG AGAACCTGAA GGACGCGCAG GAAAAGCTGG AGCTGAGCGA GAAGAAAGCC
TCCGACGCCG AAGGGGATGT AGCAGCTCTC AATCGGCGCA TCCAACTCGT TGAGGAGGAG
TTGGACAGGG CTCAGGAACG ACTGGCCACA GCCCTGCAGA AGCTTGAGGA GGCAGAAAAG
GCTGCAGATG AGAGCGAGAG AGGAATGAAG GTGATAGAAA ACCGGGCCAT GAAAGATGAG
GAGAAGATGG AGATTCAGGA GATGCAGCTC AAAGAGGCCA AGCACATTGC CGAGGAGGCC
GACCGCAAAT ACGAGGAGGT AGCTCGTAAG TTGGTCATCC TGGAGGGCGA GCTGGAGAGG
GCAGAGGAGC GTGCCGAGGT GTCTGAACTA AAATGTGGTG ACCTGGAAGA AGAACTCAAG
AATGTCACCA ACAACCTGAA GTCGCTAGAG GCTGCATCTG AAAAGTATTC TGAAAAGGAG
GATAAATATG AAGAAGAGAT TAAACTTCTG TCTGACAAAC TGAAAGAGGC TGAGACCCGT
GCTGAATTTG CAGAGAGAAC AGTTGCAAAA CTGGAAAAGA CCATCGATGA CCTGGAAGAA
AAACTTGCCC AGGCCAAAGA AGAGAACGTG GGCTTACATC AAACACTGGA TCAGACACTA
AACGAACTAA ACTGTATATA ACCAAAACAG AAAAATCTCG TTCCCTTCAA AACTTCCCAA
GCTACGTTGT TTTTCCCTTT CTCTGTAAGA AGTTTCTTTT GTTATTTGCC CCCTTTGCTT
TTGCTGGAAA TGTCAAGGCA AAATTTATAA ATACCCGTGA ACCCAATATT TTTTTTCAAA
AAAAAAAAAA ACTTTTTTAA ACCCCCTAAG TTTTTTCATT CTTTTTTTCC TTTTCCCTTT
TTTTTTTTTC CTAAGGTGGG CCCCCCCCCC CCCTTTTTTT TTTCTCCCAC CCCTTCTTTT
TTTTTTTTTT T
SNP mapping information
| SNP ID | Rel. | Chr. | Location (cM) |
|---|
| Locus | Definition | Score | E value | FL | ||
|---|---|---|---|---|---|---|
 |
 | TPM1 | tropomyosin 1 (alpha) | 330 | 2e-90 | O |
|
| TPM2 | tropomyosin 2 (beta) | 312 | 4e-85 | O |
|
| TPM1 | tropomyosin 1 (alpha) | 311 | 7e-85 | O |
|
| TPM1 | tropomyosin 1 (alpha) | 306 | 2e-83 | O |
|
| TPM2 | tropomyosin 2 (beta) | 305 | 7e-83 | O |
|
| TPM1 | tropomyosin 1 (alpha) | 287 | 1e-77 | O |
|
| TPM1 | tropomyosin 1 (alpha) | 287 | 1e-77 | O |
|
| TPM1 | tropomyosin 1 (alpha) | 269 | 4e-72 | O |
|
| TPM4 | tropomyosin 4 | 251 | 9e-67 | O |
|
| TPM3 | tropomyosin 3 | 196 | 3e-50 | O |
| Locus | Definition | Score | E value | FL |
|---|
| Locus | Definition | Score | E value | FL |
|---|
| Locus | Definition | Score | E value | FL |
|---|
| Locus | Definition | Score | E value | FL |
|---|
|
20060611C-000229 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
OVRM1_0200_C05.b : gagttgtcatxxxxxxxxxxxxxxxxxxxxxxx
OVRM1_0094_A06.b : tagttgtcxxxxxxxxxxxxxxxxxxxxxxxxx
UTR01_0062_E04.b : gccttttatgggtgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
SKNB1_0063_C10.b : nngg
20060611C-000229 : ............................CTCGACCCCGACGCCGCTGCCGCCGCAGGCCC
---------+---------+---------+---------+---------+---------+ 32
OVRM1_0200_C05.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxCTCGACCCCGACGCCGCTGCCGCCGCAGGCCC
OVRM1_0094_A06.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxCTCGACACCGACGCCGCTGCCGCCGCAGGCCC
UTR01_0062_E04.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxCTCGACCCCGACGCCGCTGCCGCCGCAGGCCC
SKNB1_0063_C10.b : gggannnnaaannccatgcgttgtgctccctcnaCCCGACGCCGCTGCCGCCGCAGGCCC
20060611C-000229 : CTCCACGCCCACACCCCCTACCCACTGCCCAGCCATGGAGGCCATCAAGAAGAAGATGCA
---------+---------+---------+---------+---------+---------+ 92
OVRM1_0200_C05.b : CTCCACGCCCACACCCCCTACCCACTGCCCAGCCATGGAGGCCATCAAGAAGAAGATGCA
OVRM1_0094_A06.b : CTCCACGCCCACACCCCCTACCCACTGCCCAGCCATGGAGGCCATCAAGAAGAAGATGCA
UTR01_0062_E04.b : CTCCACGCCCACACCCCCTACCCACTGCCCAGCCATGGAGGCCATCAAGAAGAAGATGCA
SKNB1_0063_C10.b : CTCCACGCCCACACCCCCTACCCACTGCCCAGCCATGGAGGCCGTCAAGAAGAAGATGCA
20060611C-000229 : GATGCTGAAGCTGGACAAGGAGAACGCCATCGACCGGGCCGAGCAGGCGGAGTCGGATAA
---------+---------+---------+---------+---------+---------+ 152
OVRM1_0200_C05.b : GATGCTGAAGCTGGACAAGGAGAACGCCATCGACCGGGCCGAGCAGGCGGAGTCGGATAA
OVRM1_0094_A06.b : GATGCTGAAGCTGGACAAGGAGAACGCCATCGACCGGGCCGAGCAGGCGGAGTCGGATAA
UTR01_0062_E04.b : GATGCTGAAGCTGGACAAGGAGAACGCCATCGACCGGGCCGAGCAGGCGGAGTCGGATAA
SKNB1_0063_C10.b : GATGCTGAAGCTGGACAAGGAGAACGCCATCGACCGGGCCGAGCAGGCGGAGTCGGATAA
20060611C-000229 : GAAAGCTGCTGAGGAGAAGTGCAAGCAGGTGGAGGAGGAGCTGACGCACCTCCAGAAGAA
---------+---------+---------+---------+---------+---------+ 212
OVRM1_0200_C05.b : GAAAGCTGCTGAGGAGAAGTGCAAGCAGGTGGAGGAGGAGCTGACGCACCTCCAGAAGAA
OVRM1_0094_A06.b : GAAAGCTGCTGAGGAGAAGTGCAAGCAGGTGGAGGAGGAGCTGACGCACCTCCAGAAGAA
UTR01_0062_E04.b : GAAAGCTGCTGAGGAGAAGTGCAAGCAGGTGGAGGAGGAGCTGACGCACCTCCAGAAGAA
SKNB1_0063_C10.b : GAAAGCTGCTGAGGAGAAGTGCAAGCAGGTGGAGGAGGAGCTGACGCACCTCCAGAAGAA
20060611C-000229 : GCTGAAGGGGACAGAGGATGAGCTGGACAAATACTCCGAGAACCTGAAGGACGCGCAGGA
---------+---------+---------+---------+---------+---------+ 272
OVRM1_0200_C05.b : GCTGAAGGGGACAGAGGATGAGCTGGACAAATACTCCGAGAACCTGAAGGACGCGCAGGA
OVRM1_0094_A06.b : GCTGAAGGGGACAGAGGATGAGCTGGACAAATACTCCGAGAACCTGAAGGACGCGCAGGA
UTR01_0062_E04.b : GCTGAAGGGGACAGAGGATGAGCTGGACAAATACTCCGAGAACCTGAAGGACGCGCAGGA
SKNB1_0063_C10.b : GCTGAAGGGGACAGAGGATGAGCTGGACAAATACTCCGAGAACCTGAAGGACGCGCAGGA
20060611C-000229 : AAAGCTGGAGCTGAGCGAGAAGAAAGCCTCCGACGCCGAAGGGGATGTAGCAGCTCTCAA
---------+---------+---------+---------+---------+---------+ 332
OVRM1_0200_C05.b : AAAGCTGGAGCTGAGCGAGAAGAAAGCCTCCGACGCCGAAGGGGATGTAGCAGCTCTCAA
OVRM1_0094_A06.b : AAAGCTGGAGTTGAGCGAGAAGAAAGCCTCCGACGCCGAAGGGGATGTAGCAGCTCTCAA
UTR01_0062_E04.b : AAAGCTGGAGCTGAGCGAGAAGAAAGCCTCCGACGCCGAAGGGGATGTAGCAGCTCTCAA
SKNB1_0063_C10.b : AAAGCTGGAGCTGAGCGAGAAGAAAGCCTCCGACGCCGAAGGGGATGTAGCAGCTCTCAA
20060611C-000229 : TCGGCGCATCCAACTCGTTGAGGAGGAGTTGGACAGGGCTCAGGAACGACTGGCCACAGC
---------+---------+---------+---------+---------+---------+ 392
OVRM1_0200_C05.b : TCGGCGCATCCAACTCGTTGAGGAGGAGTTGGACAGGGCTCAGGAACGACTGGCCACAGC
OVRM1_0094_A06.b : TCGGCGCATCCAACTCGTTGAGGAGGAGTTGGACAGGGCTCAGGAACGACTGGCCACAGC
UTR01_0062_E04.b : TCGGCGCATCCAACTCGTTGAGGAGGAGTTGGACAGGGCTCAGGAACGACTGGCCACAGC
SKNB1_0063_C10.b : TCGGCGCATCCAACTCGTTGAGGAGGAGTTGGACAGGGCTCAGGAACGACTGGCCACAGC
20060611C-000229 : CCTGCAGAAGCTTGAGGAGGCAGAAAAGGCTGCAGATGAGAGCGAGAGAGGAATGAAGGT
---------+---------+---------+---------+---------+---------+ 452
OVRM1_0200_C05.b : CCTGCAGAAGCTTGAGGAGGCAGAAAAGGCTGCAGATGAGAGCGAGAGAGGAATGAAGGT
OVRM1_0094_A06.b : CCTGCAGAAGCTTGAGGAGGCAGAAAAGGCTGCAGATGAGAGCGAGAGAGGAATGAAGGT
UTR01_0062_E04.b : CCTGCAGAAGCTTGAGGAGGCAGAAAAGGCTGCAGATGAGAGCGAGAGAGGAATGAAGGT
SKNB1_0063_C10.b : CCTGCAGAAGCTTGAGGAGGCAGAAAAGGCTGCAGATGAGAGCGAGAGAGGAATGAAGGT
20060611C-000229 : GATAGAAAACCGGGCCATGAAAGATGAGGAGAAGATGGAGATTCAGGAGATGCAGCTCAA
---------+---------+---------+---------+---------+---------+ 512
OVRM1_0200_C05.b : GATAGAAAACCGGGCCATGAAAGATGAGGAGAAGATGGAGATTCAGGAGATGCAGCTCAA
OVRM1_0094_A06.b : GATAGAAAACCGGGCCATGAAAGATGAGGAGAAGATGGAGATTCGGGAGATGCAGCTCAA
UTR01_0062_E04.b : GATAGAAAACCGGGCCATGAAAGATGAGGAGAAGATGGAGATTCAGGAGATGCAGCTCAA
SKNB1_0063_C10.b : GATAGAAAACCGGGCCATGAAAGATGAGGAGAAGATGGAGATTCAGGAGATGCAGCTCAA
20060611C-000229 : AGAGGCCAAGCACATTGCCGAGGAGGCCGACCGCAAATACGAGGAGGTAGCTCGTAAGTT
---------+---------+---------+---------+---------+---------+ 572
OVRM1_0200_C05.b : AGAGGCCAAGCACATTGCCGAGGAGGCCGACCGCAAATACGAGGAGGTAGCTCGTAAGTT
OVRM1_0094_A06.b : AGAGGCCAAGCACATTGCCGAGGAGGCCGACCGCAAATACGAGGAGGTAGCTCGTAAGTT
UTR01_0062_E04.b : AGAGGCCAAGCACATTGCCGAGGAGGCCGACCGCAAATACGAGGAGGTAGCTCGTAAGTT
SKNB1_0063_C10.b : AGAGGCCAAGCACATTGCCGAGGAGGCCGACCGCAAATACGAGGAGGTAGCTCGTAAGTT
20060611C-000229 : GGTCATCCTGGAGGGCGAGCTGGAGAGGGCAGAGGAGCGTGCCGAGGTGTCTGAACTAAA
---------+---------+---------+---------+---------+---------+ 632
OVRM1_0200_C05.b : GGTCATCCTGGAGGGCGAGCTGGAGAGGGCAGAGGAGCGTGCCGAGGTGTCTGAACTAAA
OVRM1_0094_A06.b : GGTCATCCTGGAGGGCGAGCTGGAGAGGGCAGAGGAGCGTGCCGAGGTGTCTGAACTAAA
UTR01_0062_E04.b : GGTCATCCTGGAGGGCGAGCTGGAGAGGGCAGAGGAGCGTGCCGAGGTGTCTGAACTAAA
SKNB1_0063_C10.b : GGTCATCCTGGAGGGCGAGCTGGAGAGGGCAGAGGAGCGTGCCGAGGTGTCTGAACTAAA
20060611C-000229 : ATGTGGTGACCTGGAAGAAGAACTCAAGAATGTCACCAACAACCTGAAGTCGCTAGAGGC
---------+---------+---------+---------+---------+---------+ 692
OVRM1_0200_C05.b : ATGTGGTGACCTGGAAGAAGAACTCAAGAATGTCACCAACAACCTGAAGTCGCTAGAGGC
OVRM1_0094_A06.b : ATGTGGTGACCTGGAAGAAGAACTCTAGAATGTCACCAACAACCTGAAGTCGCTAGAGGC
UTR01_0062_E04.b : ATGTGGTGACCTGGAAGAAGAACTCAAGAATGTCACCAACAACCTGAAGTCGCTAGAGGC
SKNB1_0063_C10.b : ATGTGGTGACCTGGAAGAAGAACTCAAGAATGTCACCAACAACCTGAAGTCGCTAGAGGC
20060611C-000229 : TG*CATCTGAAAAGTATTCTGAAAAGGAGGATAAATATGAAGAAGAGATTAAACTTCTGT
---------+---------+---------+---------+---------+---------+ 751
OVRM1_0200_C05.b : TGNCATCT*GAAAGTATTCTGAAAAGGAGGATAAATATGAn
OVRM1_0094_A06.b : TG*CATCTCGAAAGTATTCTGAAAAGGAGGATAAATACGAAGAAGAGATTCAACTTCTGT
UTR01_0062_E04.b : TG*CATCTGAAAAGTATTCTGAAAAGGAGGATAAATATGAAGAAGAGATTAAACTTCTGT
SKNB1_0063_C10.b : TG*CATCTGAAAAGTATTCTGAAAAGGAGGATAAATATGAAGAAGAGATTAAACTTCTGT
20060611C-000229 : CTGACAAACTGAAAGAGGCTGAGACCCGTGCTGAATTTGCAGAGAGAACAGTTGCAAAAC
---------+---------+---------+---------+---------+---------+ 811
OVRM1_0200_C05.b :
OVRM1_0094_A06.b : CTGACAAACTGAAAGAGGCT
UTR01_0062_E04.b : CTGACAAACTGAAAGAGGCTGAGACCCGTGCTGAATTTGCAGAGAGAACAGTTGCAAAAC
SKNB1_0063_C10.b : CTGACAAACTGAAAGAGGCTGAGACCCGTGCTGAATTTGCAGAGAGAACAGTTGCAAAAC
20060611C-000229 : TGGAAAAGACCATCGATGACCTGGAAGAAAAACTTGCCCAGGCCAAAGAAGAGAACGTGG
---------+---------+---------+---------+---------+---------+ 871
OVRM1_0200_C05.b :
OVRM1_0094_A06.b :
UTR01_0062_E04.b : TGGAAAAGACCATCGATGACCTGGAAGAAAAACTTGTCCAGGCCAAAGAAAAGAACGTGG
SKNB1_0063_C10.b : TGGAAAAGACCATCGATGACCTGNAAGAAAAACTTGCCCAGGCCAAAGAAGAGAACGTGG
20060611C-000229 : GCTTACATCAAACACTGGATCAGACACTAAACGAACTAAACTGTATATAACCAAAACAGA
---------+---------+---------+---------+---------+---------+ 931
OVRM1_0200_C05.b :
OVRM1_0094_A06.b :
UTR01_0062_E04.b : GCTTTACTCAAACACTGGATCCGACACTAAACGACCTAAACTGTATATAACCAAACCAAA
SKNB1_0063_C10.b : GCTTACATCAGACACTGGATCAGACACTAAACGAACTAAACTGTATATAACCCAAACAGA
20060611C-000229 : AAAATCTCGTTCCCTTCAAAACTTCCCAAGCTACGTTGTTTTTCCCTTTCTCT*GTAAGA
---------+---------+---------+---------+---------+---------+ 990
OVRM1_0200_C05.b :
OVRM1_0094_A06.b :
UTR01_0062_E04.b : AAAATCTCGTTCCCTCCAAAACTTCCCAAGCTACGTTGTTTTTCCCCTTCTCTTGTAAGA
SKNB1_0063_C10.b : AGAGTCTCGTTCCCATCAGAACT*CCCGAGCTACGT*GTTTTTCTCTTTCTCT*GTAAGA
20060611C-000229 : AG**TTTCTTTTGTTATTTGCCCCCTTTGCTTTTGCTGGAAAT**GTCAAGGCAAAATTT
---------+---------+---------+---------+---------+---------+ 1046
OVRM1_0200_C05.b :
OVRM1_0094_A06.b :
UTR01_0062_E04.b : AAGTTTTCTTTTGTTTTTTGCCCCCTTTGCTTTTGCCTGAAAAAGGGCAAGGCAAAATTT
SKNB1_0063_C10.b : AG**TTTCTTTTGTTATTG**CCTCTTTGCTTT*GCTGGAAAT**GTCAAGCCAA***TT
20060611C-000229 : ATAAATACCCGTGAACCCAATATTTTTTTTCAAAAAAAAAAAAAACTTTTTTAAACC***
---------+---------+---------+---------+---------+---------+ 1103
OVRM1_0200_C05.b :
OVRM1_0094_A06.b :
UTR01_0062_E04.b : ATAAATACCCGTGAACCCAATATTTTTTTTGTTATCAAAAAAAAACTTTTTTAAACC***
SKNB1_0063_C10.b : ATGAATA**CGTGA*CCCAATATTTTGGATCAAAAAAGCTTGGAGCACAGTTAAACCTAT
20060611C-000229 : *CCCTAAGTTTTTTCATTCTTTTTTTCCTTTTCCCTTTTTTTTTTTTCCTAAGGTGGGCC
---------+---------+---------+---------+---------+---------+ 1162
OVRM1_0200_C05.b :
OVRM1_0094_A06.b :
UTR01_0062_E04.b : *CCCCAAGTTTAAAAATTCTTTTTTTCCTTTTCCCTTTTTTTTTTTTCCAAGGGTGGGCC
SKNB1_0063_C10.b : TCCTTCCCTTTTTTCAGTGGGCACAGCTTTTTCCGCTCTATTTTTATCCTAAattgcttt
20060611C-000229 : CCCCCCCCCCCTTTTTTTTTTCTCCCACCCCTTCTTTTTTTTTTTTTTT...........
---------+---------+---------+---------+---------+---------+ 1211
OVRM1_0200_C05.b :
OVRM1_0094_A06.b :
UTR01_0062_E04.b : CCCCCCCCCCCTTTTTTTTTTCTCCCACCCCTTCTTTTTTTTTTTTTTT
SKNB1_0063_C10.b : attcccaaagagggcgggtaattctattagcatcctcctaaaaacgagggcttttgttcc
20060611C-000229 : ............................................................
---------+---------+---------+---------+---------+---------+ 1211
OVRM1_0200_C05.b :
OVRM1_0094_A06.b :
UTR01_0062_E04.b :
SKNB1_0063_C10.b : cgggaaaataacacccccccttttaa
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