[Overview] [RefSeq] [Assembly & SNP] [Alignment]
Assembly Name: 20060611C-003147
Length:
1,181
Sequence:
[FASTA format sequence]
GTGTTCGTGT AGGGGAGGCT GGAAGCCGCA GGAGCGGGAG ACGGTGGAGG GGATTTTGAG
AAGAAAACTG CGGTAGCGAC CTCACTCGGT GGTACAAGAG GGGAACGCTA GTCCCTCCGA
AAGCCGGGTT ACTGCGAACG CACCAGCTGA GCCCTTAGTA CTGCAACCCC CACCCTCCTT
TGGTTTGTGG AGGAGCCTGA CCACTCTGCC TCTTATGGCC ACAATGCTGA CCGCCCGCCT
CTCCAGACCC CTGTCGCAGC TCCCAAGGAA AACCCTGAAT TTCTCTGAGA GAGAAAATGG
AGCAAGAGGC TCGCTGCTGT TTTACTCTCC CTCCTTTGTC CCTGGCAGCC GTCGGACTTA
TGCTGATTCG GTGAACCCGG TTGGCAGCAA AGCTGTCCTG GTCACAGGCT GTGACTCTGG
ATTTGGGTTC TCACTGGCCA AGCATCTGCA TTCAAAAGGC TTCCTTGTAT TTGCTGGCTG
CTTGATGAAG GACAAAGGGC ATGACGGGGT CAAGGAACTG GACAGCTTGA AGAGTGATCG
ATTAAGAACC GTCCAGCTCA ATGTCTGCAA AAGTGAAGAA GTAGAGAAAG TGGTGGAGAC
CATCCGCTCG AGCTTGCAGG ACCCTGAGAA AGGCTTGTGG GGCCTGGTTA ACAATGCAGG
CATCTCAACG TTCGGGGACG TGGAATTCAC CAGCATGGAG ACCTACAAGG AGGTGGCAGA
AGTGAACCTC TGGGGCACGG TGCGGGTGAC AAAATCTTTT CTCCCTCTCA TCCGGAGGGC
CAAAGGCCGC GTGGTCAACA TCAGCAGCAT AATGGGCGCT TGGCCAATGT GAGCCGCTCC
CCCTACTGCA TCACCAAGTT CGGGGTGGAG GCTTTCTCTG ACTGCCTGCG CTACGAGATG
CACCCTCTAG GAGTGAAGGT CAGCGTGGTG GAGCCCGGCA ACTTCATCGT CGCCACCAGC
CTCTACAGCC CTGAGCGCAT CCGGGCCATC GCCACTAAGA TGTGGGAGCA GGTGCCCGAG
ACGGTGCGTC AAGACTACGG CAGGAAGTAC TTTGATGAGA TGGTCGCCAG GATGGAGAAC
TTCTGCAACA GCGGCTCCAC GGACACGTCT CCCGTCATCA ATGCTGTCAC CCACGCCCTG
ACCTCCACCA CCCCCTACAC TCGCTACCAC CCCATGGACT A
SNP mapping information
| SNP ID | Rel. | Chr. | Location (cM) |
|---|
| Locus | Definition | Score | E value | FL | ||
|---|---|---|---|---|---|---|
 |
 | BDH1 | 3-hydroxybutyrate dehydrogenase, type 1 | 305 | e-142 | O |
|
| BDH1 | 3-hydroxybutyrate dehydrogenase, type 1 | 305 | e-142 | O |
|
| BDH1 | 3-hydroxybutyrate dehydrogenase, type 1 | 305 | e-142 | O |
|
| HSD17B2 | hydroxysteroid (17-beta) dehydrogenase 2 | 117 | 2e-26 | O |
|
| HSD17B6 | hydroxysteroid (17-beta) dehydrogenase 6 | 110 | 2e-24 | O |
|
| DHRS9 | dehydrogenase/reductase (SDR family) member 9 | 108 | 5e-41 | O |
|
| RDH16 | retinol dehydrogenase 16 (all-trans) | 108 | 2e-41 | O |
|
| DHRS9 | dehydrogenase/reductase (SDR family) member 9 | 108 | 5e-41 | O |
|
| HSD11B2 | hydroxysteroid (11-beta) dehydrogenase 2 | 99.8 | 6e-32 | O |
|
| SDR-O | orphan short-chain dehydrogenase / reductase | 97.8 | 2e-20 | O |
| Locus | Definition | Score | E value | FL |
|---|
| Locus | Definition | Score | E value | FL |
|---|
| Locus | Definition | Score | E value | FL |
|---|
| Locus | Definition | Score | E value | FL |
|---|
|
20060611C-003147 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
LVRM1_0109_C11.b : nagtttgtcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
LVR01_0026_B11.b : cttagggtgaatatanngacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
LVRM1_0013_F12.b :
20060611C-003147 : ......................GTGTTCGTGTAGGGGAGGCTGGAAGCCGCAGGAGCGGG
---------+---------+---------+---------+---------+---------+ 38
LVRM1_0109_C11.b : xxxxxxxxxxxxxxxxxxxxxxGTGTTCGTGTAGGGGAGGCTGGAAGCCGCAGGAGCGGG
LVR01_0026_B11.b : xxxxxxxxxxxxxxxxxxxxxxGTGTTCGTGTAGGGGAGGCTGGAAGCCGCAGGAGCGGG
LVRM1_0013_F12.b :
20060611C-003147 : AGACGGTGGAGGGGATTTTGAGAAGAAAACTGCGGTAGCGACCTCACTCGGTGGTACAAG
---------+---------+---------+---------+---------+---------+ 98
LVRM1_0109_C11.b : AGACGGTGGAGGGGATTTTGAGAAGAAAACTGCGGTAGCGACCTCACTCGGTGGTACAAG
LVR01_0026_B11.b : AGACGGTGGAGGGGATTTTGAGAAGAAAACTGCGGTAGCGACCTCACTCGGTGGTACAAG
LVRM1_0013_F12.b :
20060611C-003147 : AGGGGAACGCTAGTCCCTCCGAAAGCCGGGTTACTGCGAACGCACCAGCTGAGCCCTTAG
---------+---------+---------+---------+---------+---------+ 158
LVRM1_0109_C11.b : AGGGGAACGCTAGTCCCTCCGAAAGCCGGGTTACTGCGAACGCACCAGCTGAGCCCTTAG
LVR01_0026_B11.b : AGGGGAACGCTAGTCCCTCCGAAAGCCGGGTTACTGCGAACGCACCAGCTGAGCCCTTAG
LVRM1_0013_F12.b :
20060611C-003147 : TACTGCAACCCCCACCCTCCTTTGGTTTGTGGAGGAGCCTGACCACTCTGCCTCTTATGG
---------+---------+---------+---------+---------+---------+ 218
LVRM1_0109_C11.b : TACTGCAACCCCCACCCTCCTTTGGTTTGTGGAGGAGCCTGACCACTCTGCCTCTTATGG
LVR01_0026_B11.b : TACTGCAACCCCCACCCTCCTTTGGTTTGTGGAGGAGCCTGACCACTCTGCCTCTTATGG
LVRM1_0013_F12.b :
20060611C-003147 : CCACAATGCTGACCGCCCGCCTCTCCAGACCCCTGTCGCAGCTCCCAAGGAAAACCCTGA
---------+---------+---------+---------+---------+---------+ 278
LVRM1_0109_C11.b : CCACAATGCTGACCGCCCGCCTCTCCAGGCCCCTGTCACAGCTCCCAAGGAAAACCCTGA
LVR01_0026_B11.b : CCACAATGCTGACCGCCCGCCTCTCCAGACCCCTGTCGCAGCTCCCAAGGAAAACCCTGA
LVRM1_0013_F12.b :
20060611C-003147 : ATTTCTCTGAGAGAGAAAATGGAGCAAGAGGCTCGCTGCTGTTTTACTCTCCCTCCTTTG
---------+---------+---------+---------+---------+---------+ 338
LVRM1_0109_C11.b : ATTTCTCTGACAGAGAAAATGGAGCAAGAGGCTCGCTGCTGTTTTACTCTCCCTCCTTTG
LVR01_0026_B11.b : ATTTCTCTGAGAGAGAAAATGGAGCAAGAGGCTCGCTGCTGTTTTACTCTCCCTCCTTTG
LVRM1_0013_F12.b :
20060611C-003147 : TCCCTGGCAGCCGTCGGACTTATGCTGATTCGGTGAACCCGGTTGGCAGCAAAGCTGTCC
---------+---------+---------+---------+---------+---------+ 398
LVRM1_0109_C11.b : TCCCTGGCGGCCGTCGGACTTATGCTGATTCAGTGAACCCGGTTGGTAGCAAAGCTGTCC
LVR01_0026_B11.b : TCCCTGGCAGCCGTCGGACTTATGCTGATTCGGTGAACCCGGTTGGCAGCAAAGCTGTCC
LVRM1_0013_F12.b :
20060611C-003147 : TGGTCACAGGCTGTGACTCTGGATTTGGGTTCTCACTGGCCAAGCATCTGCATTCAAAAG
---------+---------+---------+---------+---------+---------+ 458
LVRM1_0109_C11.b : TGGTCACAGGCTGTGACTCTGGATTTGGGTTCTCACTGGCCAAGCATCTGCATTCAAAAG
LVR01_0026_B11.b : TGGTCACAGGCTGTGACTCTGGATTTGGGTTCTCACTGGCCAAGCATCTGCATTCAAAAG
LVRM1_0013_F12.b : agttgtcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
20060611C-003147 : GCTTCCTTGTATTTGCTGGCTGCTTGATGAAGGACAAAGGGCATGACGGGGTCAAGGAAC
---------+---------+---------+---------+---------+---------+ 518
LVRM1_0109_C11.b : GCTTCCTTGTATTTGCTGGCTGCTTGATGAAAGACAAAGGGCATGACGGGGTCAAGGAAC
LVR01_0026_B11.b : GCTTCCTTGTATTTGCTGGCTGCTTGATGAAGGACAAAGGGCATGACGGGGTCAAGGAAC
LVRM1_0013_F12.b : xxxxCCTTGTATTTGCTGGCTGCTTGATGAAGGACAAAGGGCATGACGGGGTCAAGGAAC
20060611C-003147 : TGGACAGCTTGAAGAGTGATCGATTAAGAACCGTCCAGCTCAATGTCTGCAAAAGTGAAG
---------+---------+---------+---------+---------+---------+ 578
LVRM1_0109_C11.b : TGGACAGCTTGTAGAGTGATCGATTAAGAACCGTCCAGCTCAATGTCTGCTAAAGTGAAG
LVR01_0026_B11.b : TGGACAGCTTGAAGAGTGATCGATTAAGAACCGTCCAGCTCAATGTCTGCAAAAGTGAAG
LVRM1_0013_F12.b : TGGACAGCTTGAAGAGTGATCGATTAAGAACCGTCCAGCTCAATGTCTGCAAAAGTGAAG
20060611C-003147 : AAGTAGAGAAAGTGGTGGAGACCATCCGCTCGAGCTTGCAGGACCCTGAGAAAGGCTTGT
---------+---------+---------+---------+---------+---------+ 638
LVRM1_0109_C11.b : AAGTACAGAAAGTGGTGGAGACCATCCGCCCGAGCTTGCAGGACCCTGAGAAAGGCTCGT
LVR01_0026_B11.b : AAGTAGAGAAAGTGGTGGAGACCATCCGCTCGAGCTTGCAGGACCCTGAGAAAGGCTTGT
LVRM1_0013_F12.b : AAGTAGAGAAAGTGGTGGAGACCATCCGCTCGAGCTTGCAGGACCCTGAGAAAGGCTTGT
20060611C-003147 : GGGGCCTGGTTAACAATGCAGGCATCTCAACGTTCGGGGACGTGGAATTCACCAGCATGG
---------+---------+---------+---------+---------+---------+ 698
LVRM1_0109_C11.b : GGGGCCTGGTTAACATTGCATGCATCTCAACGTTCGGGGACGTGGCATTCACCCGCATGG
LVR01_0026_B11.b : GGGGCCTGGTTAACAATGCAGGCATCTCAACGTTCGGGGACGTGGAATTCACCAGCATGG
LVRM1_0013_F12.b : GGGGCCTGGTTAACAATGCAGGCATCTCAACGTTCGGGGACGTGGAATTCACCAGCATGG
20060611C-003147 : AGACC*TACAAGGAGGTGGCAGAAGTGAACCTCTGGGGCACGGTGCGGGTGACAAAATCT
---------+---------+---------+---------+---------+---------+ 757
LVRM1_0109_C11.b : AGATC*TACAAA*ATGTGGCAGAAGTGAAACTCTGGGGCACGGTGCAGGTGACAAAATCt
LVR01_0026_B11.b : AGACC*TACAAGGAGGTGGCAGAAGTGAACCTCTGGGGCACGGTGCGGGTGACAAAATCC
LVRM1_0013_F12.b : AGACCATACAAGGAGGTGGCAGAAGTGAACCTCTGGGGCACGGTGCGGGTGACAAAATCT
20060611C-003147 : TTTCTCCCTCTCATCCGGAGGGCCAAAGGCCGCGTGGTCAACATCAGCAGCATAATGGGC
---------+---------+---------+---------+---------+---------+ 817
LVRM1_0109_C11.b : tt
LVR01_0026_B11.b : TTTCTCCCTCTCATCCGGAGGGCCAAAGatttccaagaaacaacaacctcaaaatgtcca
LVRM1_0013_F12.b : TTTCTCCCTCTCATCCGGAGGGCCAAAGGCCGCGTGGTCAACATCAGCAGCATAATGGGC
20060611C-003147 : GCTTGGCCAATGTGAGCCGCTCCCCCTACTGCATCACCAAGTTCGGGGTGGAGGCTTTCT
---------+---------+---------+---------+---------+---------+ 877
LVRM1_0109_C11.b :
LVR01_0026_B11.b : agtcatcaaggaccccatctggacgggaaagcttggtactgctcgctgttttactaccaa
LVRM1_0013_F12.b : GCTTGGCCAATGTGAGCCGCTCCCCCTACTGCATCACCAAGTTCGGGGTGGAGGCTTTCT
20060611C-003147 : CTGACTGCCTGCGCTACGAGATGCACCCTCTAGGAGTGAAGGTCAGCGTGGTGGAGCCCG
---------+---------+---------+---------+---------+---------+ 937
LVRM1_0109_C11.b :
LVR01_0026_B11.b : gttcccttgtcacctgggcaagtcccttctccattttccacctcactctcctcatttaaa
LVRM1_0013_F12.b : CTGACTGCCTGCGCTACGAGATGCACCCTCTAGGAGTGAAGGTCAGCGTGGTGGAGCCCG
20060611C-003147 : GCAACTTCATCGTCGCCACCAGCCTCTACAGCCCTGAGCGCATCCGGGCCATCGCCACTA
---------+---------+---------+---------+---------+---------+ 997
LVRM1_0109_C11.b :
LVR01_0026_B11.b : aatagcagtaatgacaacaatcataaccattcctaacacgctgtgacccaggcagaacat
LVRM1_0013_F12.b : GCAACTTCATCGTCGCCACCAGCCTCTACAGCCCTGAGCGCATCCGGGCCATCGCCACTA
20060611C-003147 : AGATGTGGGAGCAGGTGCCCGAGACGGTGCGTCAAGACTACGGCAGGAAGTACTTTGATG
---------+---------+---------+---------+---------+---------+ 1057
LVRM1_0109_C11.b :
LVR01_0026_B11.b : gctctaaaaccaactgcctgcctaatttctaccaccccttttaagggaaacagcagttat
LVRM1_0013_F12.b : AGATGTGGGAGCAGGTGCCCGAGACGGTGCGTCAAGACTACGGCAGGAAGTACTTTGATG
20060611C-003147 : AGATGGTCGCCAGGATGGAGAACTTCTGCAACAGCGGCTCCACGGACACGTCTCCCGTCA
---------+---------+---------+---------+---------+---------+ 1117
LVRM1_0109_C11.b :
LVR01_0026_B11.b : tttttatttcccggaaaaacccccaaaacaaccccagggtttttttcatttttgcccccc
LVRM1_0013_F12.b : AGATGGTCGCCAGGATGGAGAACTTCTGCAACAGCGGCTCCACGGACACGTCTCCCGTCA
20060611C-003147 : TCAATGCTGTCACCCACGCCCTGACCTCCACCACCCCCTACACTCGCTACCACCCCATGG
---------+---------+---------+---------+---------+---------+ 1177
LVRM1_0109_C11.b :
LVR01_0026_B11.b : aaggtttccccccccccaaccaaaaaagttctaaaaaaatgggaaagaaaaaaaactttt
LVRM1_0013_F12.b : TCAATGCTGTCACCCACGCCCTGACCTCCACCACCCCCTACACTCGCTACCACCCCATGG
20060611C-003147 : ACTA........................................................
---------+---------+---------+---------+---------+---------+ 1181
LVRM1_0109_C11.b :
LVR01_0026_B11.b : ttttaaaaaaaaaaaacaaaaaccccc
LVRM1_0013_F12.b : ACTActactggtgggtgcgaatgcaaatcatgacccagttgcctgggaccatctccgaca
20060611C-003147 : ............................................................
---------+---------+---------+---------+---------+---------+ 1181
LVRM1_0109_C11.b :
LVR01_0026_B11.b :
LVRM1_0013_F12.b : aga
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