[Overview] [RefSeq] [Assembly & SNP] [Alignment]
Assembly Name: 20060611C-003258
Length:
993
Sequence:
[FASTA format sequence]
CATGCGCCAC AAAAGGTTCC GATCCGGAAA CTACCCATCC TCGTTAAGCA ACGAGACAGA
CCGCCTGGTA CACTGGTGCC ACGGGGCGCC CGGCGTCATC CACACGCTCA TGCAGGCGTA
CAAGGTGTTT AAGGAGGAGA AGTACCTGAG GGACGCCGTG GAGTGCAGCG ACGTGATTTG
GCAGCGGGGC CTGCTGCGCA AGGGCTACGG CATCTGCCAC GGGACTGCGG GCAACGGCTA
CTCCTTCCTC TCCCTTTACC GCCTCACGCA GGACAAGAAG TACCTCTACC GAGCTTGCAA
GTTTGCAGAG TGGTGTCTGG AGTACGGAGC ACATGGTTGC CGCATTCCCG ACAGGCCCTA
CTCTCTCTTC GAAGGCATGG CCGGCGCCAT TCACTTCCTC TCCGACATCC TGGCCCCCGA
GACAGCACGG TTTCCAGCAT TTGAACTCGG CTCTTCAGAG AGGGATCCAA AGGTGCAAAA
AGACTCCTAA GGGACCCGAC GGGACCACAG GCCGCCAGGT TGCCTGGCGC CTGACACAGA
AGCCACCGTG CATCCTGAGG AAGGGAGGAC GGAGGGAGCA GAGCCCCGCA GACCCCCGCC
CCGCCAGCCT GCTGTGCTCC CCTCGCTGGT GTCAGCGTGA CGTCTCCGTG TCCAGTGCTG
CGTAATGTTT GCATGTCCCT CGGTGTTTGC TCTCCGTAGG CGTAGGTTGT TCTCAGCGGA
AGCCCTTCTC TGTCCATGAG CCCGAGCTGG CCGTGCATGA GGGCACACAG CAGCCCCTTC
TCCGTACCCA ATAAAGCGGG GTGCTTCTGT ATTGGCAGAC AGGACACAGG CAGGTGGTGT
CTCTCTTATG TACCAGAAAG ACTCTCTTTT AAGATGCCAT CCCAGTGTGA GACTTTTCCC
AGCATTTCCT GTGGGACCCT TTTGGGGGAG CTTGAGAGAA AGACTGCTCC AGAAATGAAA
AGAAATAGCG GAGGTAGAGG GGCTTTCGCT GGA
SNP mapping information
| SNP ID | Rel. | Chr. | Location (cM) |
|---|
| Locus | Definition | Score | E value | FL | ||
|---|---|---|---|---|---|---|
 |
 | LANCL2 | LanC lantibiotic synthetase component C-like 2 (bacterial) | 315 | 3e-86 | |
|
| LANCL1 | LanC lantibiotic synthetase component C-like 1 (bacterial) | 244 | 8e-65 | |
|
| LANCL3 | LanC lantibiotic synthetase component C-like 3 (bacterial) | 108 | 5e-24 |
| Locus | Definition | Score | E value | FL |
|---|
| Locus | Definition | Score | E value | FL |
|---|
| Locus | Definition | Score | E value | FL |
|---|
| Locus | Definition | Score | E value | FL |
|---|
|
20060611C-003258 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
SPL01_0057_B02.b : nnnnggcatgtgacttnacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
OVR01_0037_H03.b : gaggctcttggtgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
TCH01_0028_D05.b :
20060611C-003258 : .....................CATGCGCCACAAAAGGTTCCGATCCGGAAACTACCCATC
---------+---------+---------+---------+---------+---------+ 39
SPL01_0057_B02.b : xxxxxxxxxxxxxxxxxxxxxCATGCGCCACAAAAGGTTCCGATCCGGAAACTACCCATC
OVR01_0037_H03.b : xxxxxxxxxxxxxxxxxxxxxxctgttcaactggAGGTTCCGATCCGGAAACTACCCATC
TCH01_0028_D05.b :
20060611C-003258 : CTCGTTAAGCAACGAGACAGACCGCCTGGTACACTGGTGCCACGGGGCGCCCGGCGTCAT
---------+---------+---------+---------+---------+---------+ 99
SPL01_0057_B02.b : CTCGTTAAGCAACGAGACAGACCGCCTGGTACACTGGTGCCACGGGGCGCCCGGCGTCAT
OVR01_0037_H03.b : CTCGTTAAGCAACGAGACAGACCGCCTGGTACACTGGTGCCACGGGGCGCCCGGCGTCAT
TCH01_0028_D05.b :
20060611C-003258 : CCACACGCTCATGCAGGCGTACAAGGTGTTTAAGGAGGAGAAGTACCTGAGGGACGCCGT
---------+---------+---------+---------+---------+---------+ 159
SPL01_0057_B02.b : CCACACGCTCATGCAGGCGTACAAGGTGTTTAAGGAGGAGAAGTACCTGAGGGACGCCGT
OVR01_0037_H03.b : CCACACGCTCATGCAGGCGTACAAGGTGTTTAAGGAGGAGAAGTACCTGAGGGACGCCGT
TCH01_0028_D05.b : nntttcagctgtgacatgac
20060611C-003258 : GGAGTGCAGCGACGTGATTTGGCAGCGGGGCCTGCTGCGCAAGGGCTACGGCATCTGCCA
---------+---------+---------+---------+---------+---------+ 219
SPL01_0057_B02.b : GGAGTGCAGCGACGTGATTTGGCAGCGGGGCCTGCTGCGCAAGGGCTACGGCATCTGCCA
OVR01_0037_H03.b : GGAGTGCAGCGACGTGATTTGGCAGCGGGGCCTGCTGCGCAAGGGCTACGGCATCTGCCA
TCH01_0028_D05.b : agtttgtacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxA
20060611C-003258 : CGGGACTGCGGGCAACGGCTACTCCTTCCTCTCCCTTTACCGCCTCACGCAGGACAAGAA
---------+---------+---------+---------+---------+---------+ 279
SPL01_0057_B02.b : CGGGACTGCGGGCAACGGCTACTCCTTCCTCTCCCTTTACCGCCTCACGCAGGACAAGAA
OVR01_0037_H03.b : CGGGACTGCGGGCAACGGCTACTCCTTCCTCTCCCTTTACCGCCTCACGCAGGACAAGAA
TCH01_0028_D05.b : CGGGACTGCGGGCAACGGCTACTCCTTCCTCTCCCTTTACCGCCTCACGCAGGACAAGAA
20060611C-003258 : GTACCTCTACCGAGCTTGCAAGTTTGCAGAGTGGTGTCTGGAGTACGGAGCACATGGTTG
---------+---------+---------+---------+---------+---------+ 339
SPL01_0057_B02.b : GTACCTCTACCGAGCTTGCAAGTTTGCAGAGTGGTGTCTGGAGTACGGAGCACATGGTTG
OVR01_0037_H03.b : GTACCTCTACCGAGCTTGCAAGTTTGCAGAGTGGTGTCTGGAGTACGGAGCACATGGTTG
TCH01_0028_D05.b : GTACCTCTACCGAGCTTGCAAGTTTGCAGAGTGGTGTCTGGAGTACGGAGCACATGGTTG
20060611C-003258 : CCGCATTCCCGACAGGCCCTACTCTCTCTTCGAAGGCATGGCCGGCGCCATTCACTTCCT
---------+---------+---------+---------+---------+---------+ 399
SPL01_0057_B02.b : CCGCATTCCCGACAGGCCCTACTCTCTCTTCGAAGGCATGGCCGGCGCCATTCACTTCCT
OVR01_0037_H03.b : CCGCATTCCCGACAGGCCCTACTCTCTCTTCGAAGGCATGGCCGGCGCCATTCACTTCCT
TCH01_0028_D05.b : CCGCATTCCCGACAGGCCCTACTCTCTCTTCGAAGGCATGGCCGGCGCCATTCACTTCCT
20060611C-003258 : CTCCGACATCCTGGCCCCCGAGACAGCACGGTTTCCAGCATTTGAACTCGGCTCTTCAGA
---------+---------+---------+---------+---------+---------+ 459
SPL01_0057_B02.b : CTCCGACATCCTGGCCCCCGAGACAGCACGGTTTCCAGCATTTGAACTCGGCTCTTCAGA
OVR01_0037_H03.b : CTCCGACATCCTGGCCCCCGAGACAGCACGGTTTCCAGCATTTGAACTCGGCTCTTCAGA
TCH01_0028_D05.b : CTCCGACATCCTGGCCCCCGAGACAGCACGGTTTCCAGCATTTGAACTCGGCTCTTCAGA
20060611C-003258 : GAGGGATCCAAAGGTGCAAAAAGACTCCTAAGGGACCCGACGGGACCACAGGCCGCCAGG
---------+---------+---------+---------+---------+---------+ 519
SPL01_0057_B02.b : GAGGGATCCAAAGGTGCAAAAAGACTCCTAAGGGACCCGACGGGACCACAGGCCGCCAGG
OVR01_0037_H03.b : GAGGGATCCAAAGGTGCAAAAAGACTCCTAAGGGACCCGACGGGACCACAGGCCGCCAGG
TCH01_0028_D05.b : GAGGGATCCAAAGGTGCAAAAAGACTCCTAAGGGACCCGACGGGACCACAGGCCGCCAGG
20060611C-003258 : TTGCCTGGCGCCTGACACAGAAGCCACCGTGCATCCTGAGGAAGGGAGGACGGAGGGAGC
---------+---------+---------+---------+---------+---------+ 579
SPL01_0057_B02.b : TTGCCTGGCGCCTGACACAGAAGCCACCGTGCATCCTGAGGAAGGGAGGACGGAGGGAGC
OVR01_0037_H03.b : TTGCCTGGCGCCTGACACAGAAGCCACCGTGCATCCTGAGGAAGGGAGGACGGAGGGAGC
TCH01_0028_D05.b : TTGCCTGGCGCCTGACACAGAAGCCACCGTGCATCCTGAGGAAGGGAGGACGGAGGGAGC
20060611C-003258 : AGAGCCCCGCAGACCCCCGCCCCGCCAGCCTGCTGTG******CTCCCCTCGCTGGTGTC
---------+---------+---------+---------+---------+---------+ 633
SPL01_0057_B02.b : AGAGCCCCGCAGACCCCCGCCCCGCCAGCCTGCTGTG******CTCCCCTCGCTGGTGTC
OVR01_0037_H03.b : AGAGCCCCGCAGACCCCCGCCCCGCCAGCCTGCTGTGACCGTGCTCCCCTCGCTGGTGTC
TCH01_0028_D05.b : AGAGCCCCGCAGACCCCCGCCCCGCCAGCCTGCTGTG******CTCCCCTCGCTGGTGTC
20060611C-003258 : AGCGTGACGTCTCCGTGTCCAGTGCTGCGTAATGTTTGCATGTCCCTCGGTGTTTGCTCT
---------+---------+---------+---------+---------+---------+ 693
SPL01_0057_B02.b : AGCGTGACGTCTCCGTGTCCAGTGCTGCGTAATGTTTGCATGTCCCTCGGTGTTTGCTCT
OVR01_0037_H03.b : AGCGTGACGTCTCCGTGTCCAGTGCTGCGTAATGTTTGCATGTCCCTCGGTGTTTGCTCT
TCH01_0028_D05.b : AGCGTGACGTCTCCGTGTCCAGTGCTGCGTAATGTTTGCATGTCCCTCGGTGTTTGCTCT
20060611C-003258 : CCGTAGGCGTAGGTTGTTCTCAGCGGAAGCCCTTCTCTGTCCATGAG*CCCGAGCTGGCC
---------+---------+---------+---------+---------+---------+ 752
SPL01_0057_B02.b : CCGTANGCGTANGTTGTTCTCAGCGGAAGCCCTTCTCTGTCCATGAGCCCCGAGCTGGCC
OVR01_0037_H03.b : CCGTAGGCGTAGGTTGTTCTCAGCGGAAGCCCTTCTCTGTCCATGAG*CCCGAGCTGGCC
TCH01_0028_D05.b : CCGTAGGCGTAGGTTGTTCTCAGCGGAAGCCCTTCTCTGTCCATGAG*CCCGAGCTGGCC
20060611C-003258 : GTGCATGAGGGCACACAGCAGCCCCTTCTCCGTACCCAATAAAGCGGGGTGCTTCTGTAT
---------+---------+---------+---------+---------+---------+ 812
SPL01_0057_B02.b : CTGCATGAAGGCACACAGCAGCCCCTTCTCCGTACCCAATAAAGCGGGGTGCTTCTGTAT
OVR01_0037_H03.b : GTGCATGAGGGCACACAGCAGCCCCTTCTCCGTACCCAATAAAGCGGGGTGCTTCTGTAT
TCH01_0028_D05.b : GTGCATGAGGGCACACAGCAGCCCCTTCTCCGTACCCAATAAAGCGGGGTGCTTCTGTAT
20060611C-003258 : TGGCAGACAGGACACAGGCAGGTGGTGTCTCTCTTATGTACCAGAAAGACTCTCTTTTAA
---------+---------+---------+---------+---------+---------+ 872
SPL01_0057_B02.b : TGGcagacggacaccagcagggggttgtctctccttagttaccagaaagactctcctttt
OVR01_0037_H03.b : TGGAAAACAGGACACAGGCAAGTGGTGTCTCTCTTATGTACCAAAAAAACTCTCTTTTAA
TCH01_0028_D05.b : TGGCAGACAGGACACAGGCAGGTGGTGTCTCTCTTATGTACCAGAAAGACTCTCTTTTAA
20060611C-003258 : GATGCCATCCCAGTGTGAGACTTTTCCCAGCATTTCCT*GTGGGACCCTTTTGGGGGAGC
---------+---------+---------+---------+---------+---------+ 931
SPL01_0057_B02.b : agaatgccatcccaggggggaaacttttccccagcattttctggtgggaacctttttggg
OVR01_0037_H03.b : GATGCCATCCCAGTGTGAAACTTTTCCCA*CATTTCCTTGTGGAACCCTTTTGGGGGgag
TCH01_0028_D05.b : GATGCCATCCCAGTGTGAGACTTTTCCCAGCATTTCCT*GTGGGACCCTTTTGGGGGAGC
20060611C-003258 : TTGAGAGAAAGACTGCTCCAGAAATGAAAAGAAATAGCGGAGGTAGAGGGGCTTTCGCTG
---------+---------+---------+---------+---------+---------+ 991
SPL01_0057_B02.b : ggaaacttgaaaaaaaaaacttgctcccaaaaatgaaaaaaaaattaccgaaaggtaaaa
OVR01_0037_H03.b : ctttgaaaaaaaaattgctcccaaaaatggaaaaaaaaaaccggaaggtaaaaggggttt
TCH01_0028_D05.b : TTGAGAGAAAGACTGCTCCAGAAATGAAAAGAAATAGCGGAGGTAGAGGGGCTTTCGCTG
20060611C-003258 : GA..........................................................
---------+---------+---------+---------+---------+---------+ 993
SPL01_0057_B02.b : gggggctttctccctggaaaggggggccgggggaacact
OVR01_0037_H03.b : ttccttggaaggggggtttggggaagcctttggccccccgtttggaaccaaccccctctt
TCH01_0028_D05.b : GAggggggctggggagccttggccccagttggaccagcccctctgtgggtcttatgctca
20060611C-003258 : ............................................................
---------+---------+---------+---------+---------+---------+ 993
SPL01_0057_B02.b :
OVR01_0037_H03.b : tgggggttttttttggttcctcccttttcggggggtttttaggagaaaccccaaaggggg
TCH01_0028_D05.b : ccttcgtggttttaggaagcccgaagggggcgcggggcaactctgccgggctcccatcgc
20060611C-003258 : ............................................................
---------+---------+---------+---------+---------+---------+ 993
SPL01_0057_B02.b :
OVR01_0037_H03.b : gggccccgggtggggaaacttttctttcccccggggtttccccccccctttccccacagg
TCH01_0028_D05.b : aggctctttatgtggaattccaaaccttgaaatccagggcagtccgtggcctggggaggg
20060611C-003258 : ............................................................
---------+---------+---------+---------+---------+---------+ 993
SPL01_0057_B02.b :
OVR01_0037_H03.b : ggctcttttttttttttaggggggtgtaaaaaaaaatttttt
TCH01_0028_D05.b : aaccaatggcaccggtgacgggggtttgggggaacctttgtatgtggcacaggcaaacaa
20060611C-003258 : ............................................................
---------+---------+---------+---------+---------+---------+ 993
SPL01_0057_B02.b :
OVR01_0037_H03.b :
TCH01_0028_D05.b : gccatatggcgtgtttgtactaaaagaatggacctccatttatcacatcctaacgtctgt
20060611C-003258 : ............................................................
---------+---------+---------+---------+---------+---------+ 993
SPL01_0057_B02.b :
OVR01_0037_H03.b :
TCH01_0028_D05.b : tccagttcacaaaatacttccgaaggggcataacaaaaaaattccgctttcccggccccc
20060611C-003258 : ............................................................
---------+---------+---------+---------+---------+---------+ 993
SPL01_0057_B02.b :
OVR01_0037_H03.b :
TCH01_0028_D05.b : caattaattttttaaattcgaaaannacnaaaaaaaaaaaaaanggggccctgttcgaac
20060611C-003258 : ............................................................
---------+---------+---------+---------+---------+---------+ 993
SPL01_0057_B02.b :
OVR01_0037_H03.b :
TCH01_0028_D05.b : tgggccggcccctctaaaatcctgggggccactttct
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