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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20060611C-004709

Length: 1,036

Sequence:  [FASTA format sequence]
TAGAAGGCAG TGGCTGCAGG TGGCTGTCGG TTTAAGCAGT TGCGTGCGCT CTCTCTCTCT
CTCTCTCTCT TCTGGGACTC TCGGGAGCTG CGGCTCCGGC GCCAGGTGGC AAGACGCGGG
TCTCGGAGAC GCCAGCCTCC GTGCATCCCA CTGTGGTTCG GGGGTGGTGG TTTTTAAGTA
CGGAAGGGCC CTTGGTTCCA CCGGAGGAAT CTGCCGTGGG TCCCCGAGTT CCTGGAGCTG
TCTTCCGTAT ACCTGAGTCA GACCAGAGCA CAGTCCGAAG GGCGGGCAGG AGGGCTCATC
TGTGTACTGT GTGCAGTAAA ACATTCCAGC CATCTGTCAG GAAAGTGTTC CCACTATGGA
TTTCAAGTCT GTCTCAAAGC AGCAGTCCAG GACCAGGACC TCTTCTAGGG AGATGAGAAG
ACTGAGTCCT ACAAACATTA AATGATTTTC TCAAGCAGCC TCAGTGCATA AGAATTGGGG
TCCAGGCCAC CACTCCGTCA GCCTGCCTCT AGGTGTGAAG GAGCGAGTGC CTGATCAGAA
TGGCTGTGGG ATGGTTTTAC CTGTCGGCCC TGGCGCTGTT CTCCCTGGGC TCCATGTGCA
TCCTCTCCAC CATCTATTGG ATGCGGTACT GGCACAAAGG CTTTGCCTGG GATGGCACCA
TACTCACGTT CAACTGGCAC CCGGTGCTCA TGGTGACTGG CATGGTGGTG CTCTACAGTG
CTGCGTCGCT GGCGTACCGC CTGCCCCAGT CATGGGTAGG GCCCAAGCTG CCCTGGAAGT
TGGGCCACGC AGCCATGCAC CTGATGGCCT TCATCCTGAC TGTGCTGGGG CTGGCGGCCG
TCTTTAACTT TCACAACCAC GAGAAGATCC CCAACCTCTA CTCCCTGCAC AGCTGGCTGG
GCATCACCAC CGTCTTCCTC TTTCGCCTGC AGTGGGTCTT GGGCTTTGTG GTCTTTCTGC
TGCCCTGGGC GTCTGTGCCG CTGCGCAGCC TCTTAAACCC ATCCACGTCT TCTTTGGACC
CTCATTCTCT CTCTGG

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)
SNPF01977	0.91b	2	33.9

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
			cytochrome b, ascorbate dependent 3	249	6e-67	O
			cytochrome b reductase 1	139	5e-33	O
			cytochrome b-561	103	3e-22	O
			cytochrome b-561	103	3e-22	O
			cytochrome b-561	103	3e-22	O
			cytochrome b-561	103	3e-22	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL

Alignment:      TOP

20060611C-004709 : ......................................................TAGAAG
                   ---------+---------+---------+---------+---------+---------+ 6
ITT01_0029_H11.b : nagatgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTAGAAG
MLN01_0058_B11.b :                                                             


20060611C-004709 : GCAGTGGCTGCAGGTGGCTGTCGGTTTAAGCAGTTGCGTGCGCTCTCTCTCTCTCTCTCT
                   ---------+---------+---------+---------+---------+---------+ 66
ITT01_0029_H11.b : GCAGTGGCTGCAGGTGGCTGTCGGTTTAAGCAGTTGCGTGCGctctctctctctctctct
MLN01_0058_B11.b :                                            nggctaggacttgacag


20060611C-004709 : CTCTTCTGGGACTCTCGGGAGCTGCGGCTCCGGCGCCAGGTGGCAAGACGCGGGTCTCGG
                   ---------+---------+---------+---------+---------+---------+ 126
ITT01_0029_H11.b : ctctTCTGGGACTCTCGGGAGCTGCGGCTCCGGCGCCAGGTGGCAAGACGCGGGTCTCGG
MLN01_0058_B11.b : tttgtcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxt


20060611C-004709 : AGACGCCAGCCTCCGTGCATCCCACTGTGGTTCGGGGGTGGTGGTTTTTAAGTACGGAAG
                   ---------+---------+---------+---------+---------+---------+ 186
ITT01_0029_H11.b : AGACGCCAGCCTCCGTGCATCCCACTGTGGTTCGGGGGTGGTGGTTTTTAAGTACGGAAG
MLN01_0058_B11.b : agaaggcagtggctgcaggtggctgtcggtttaagcaGTGGTGGTTTTTAAGTACGGAAG


20060611C-004709 : GGCCCTTGGTTCCACCGGAGGAATCTGCCGTGGGTCCCCGAGTTCCTGGAGCTGTCTTCC
                   ---------+---------+---------+---------+---------+---------+ 246
ITT01_0029_H11.b : GGCCCTTGGTTCCACCGGAGGAATCTGCCGTGGGTCCCCGAGTTCCTGGAGCTGTCTTCC
MLN01_0058_B11.b : GGCCCTTGGTTCCACCGGAGGAATCTGCCGTGGGTCCCCGAGTTCCTGGAGCTGTCTTCC


20060611C-004709 : GTATACCTGAGTCAGACCAGAGCACAGTCCGAAGGGCGGGCAGGAGGGCTCATCTGTGTA
                   ---------+---------+---------+---------+---------+---------+ 306
ITT01_0029_H11.b : GTATACCTGAGTCAGACCAGAGCACAGTCCGAAGGGCGGGCAGGAGGGCTCATCTGTGTA
MLN01_0058_B11.b : GTATACCTGAGTCAGACCAGAGCACAGTCCGAAGGGCGGGCAGGAGGGCTCATCTGTGTA


20060611C-004709 : CTGTGTGCAGTAAAACATTCCAGCCATCTGTCAGGAAAGTGTTCCCACTATGGATTTCAA
                   ---------+---------+---------+---------+---------+---------+ 366
ITT01_0029_H11.b : CTGTGTGCAGTAAAACATTCCAGCCATCTGTCAGGAAAGTGTTCCCACTATGGATTTCAA
MLN01_0058_B11.b : CTGTGTGCAGTAAAACATTCCAGCCATCTGTCAGGAAAGTGTTCCCACTATGGATTTCAA


20060611C-004709 : GTCTGTCTCAAAGCAGCAGTCCAGGACCAGGACCTCTTCTAGGGAGATGAGAAGACTGAG
                   ---------+---------+---------+---------+---------+---------+ 426
ITT01_0029_H11.b : GTCTGTCTCAAAGCAGCAGTCCAGGACCAGGACCTCTTCTAGGGAGATGAGAAGACTGAG
MLN01_0058_B11.b : GTCTGTCTCAAAGCAGCAGTCCAGGACCAGGACCTCTTCTAGGGAGATGAGAAGACTGAG


20060611C-004709 : TCCTACAAACATTAAATGATTTTCTCAAGCAGCCTCAGTGCATAAGAATTGGGGTCCAGG
                   ---------+---------+---------+---------+---------+---------+ 486
ITT01_0029_H11.b : TCCTACAAACATTAAATGATTTTCTCAAGCAGCCTCAGTGCATAAGAATTGGGGTCCAGG
MLN01_0058_B11.b : TCCTACAAACATTAAATGATTTTCTCAAGCAGCCTCAGTGCATAAGAATTGGGGTCCAGG


20060611C-004709 : CCACCACTCCGTCAGCCTGCCTCTAGGTGTGAAGGAGCGAGTGCCTGATCAGAATGGCTG
                   ---------+---------+---------+---------+---------+---------+ 546
ITT01_0029_H11.b : CCACCACTCCGTCAGCCTGCCTCTAGGTGTGAAGGAGCGAGTGCCTGATCAGAATGGCTG
MLN01_0058_B11.b : CCACCACTCCGTCAGCCTGCCTCTAGGTGTGAAGGAGCGAGTGCCTGATCAGAATGGCTG


20060611C-004709 : TGGGATGGTTTTACCTGTCGGCCCTGGCGCTGTTCTCCCTGGGCTCCATGTGCATCCTCT
                   ---------+---------+---------+---------+---------+---------+ 606
ITT01_0029_H11.b : TGGGATGGTTTTACCTGTCGGCCCTGGCGCTGTTCTCCCTGGGCTCCATGTGCATCCTCT
MLN01_0058_B11.b : TGGGATGGTTTTACCTGTCGGCCCTGGCGCTGTTCTCCCTGGGCTCCATGTGCATCCTCT


20060611C-004709 : CCACCATCTATTGGATGCGGTACTGGCACAAAGGCTTTGCCTGGGATGGCACCATACTCA
                   ---------+---------+---------+---------+---------+---------+ 666
ITT01_0029_H11.b : CCACCATCTATTGGATGCGGTACTGGCACAAAGGCTTTGCCTGGGATGGCACCATACTCA
MLN01_0058_B11.b : CCACCATCTATTGGATGCGGTACTGGCACAAAGGCTTTGCCTGGGATGGCACCATACTCA


20060611C-004709 : CGTTCAACTGGCACCCGGTGCTCATGGTGACTGGCATGGTGGTGCTCTACAGTGCTGCGT
                   ---------+---------+---------+---------+---------+---------+ 726
ITT01_0029_H11.b : CGTTCAACTGGCACCCGGTGCTCATGGTGACTGGCATGGTGGTGCTCTACAGTGCTGCGT
MLN01_0058_B11.b : CGTTCAACTGGCACCCGGTGCTCATGGTGACTGGCATGGTGGTGCTCTACAGTGCTGCGT


20060611C-004709 : CGCTGGCGTACCGCCTGCCCCAGTCATGGGTAGGGCCCAAGCTGCCCTGGAAGTTGGGCC
                   ---------+---------+---------+---------+---------+---------+ 786
ITT01_0029_H11.b : CGCTGGCGTACCGCCTGCCCCAGTCATGGGTAGGGCCCAAGCTGCCCTGGAAGTTGGGCC
MLN01_0058_B11.b : CGCTGGCGTACCGCCTGCCCCAGTCATGGGTAGGGCCCAAGCTGCCCTGGAAGTTGGGCC


20060611C-004709 : ACGCAGCCATGCACCTGATGGCCTTCATCCTGACTGTGCTGGGGCTGGCGGCCGTCTTTA
                   ---------+---------+---------+---------+---------+---------+ 846
ITT01_0029_H11.b : ACGCAGCCATGCACCTGATGGCCTTCATCCTGACTGTGCTGGGGCTGGCGGCCGTCTTTA
MLN01_0058_B11.b : ACGCAGCCATGCACCTGATGGCCTTCATCCTGACTGTGCTGGGGCTGGCGGCCGTCTTTA


20060611C-004709 : ACTTTCACAACCACGAGAAGATCCCCAACCTCTACTCCCTGCACAGCTGGCTGGGCATCA
                   ---------+---------+---------+---------+---------+---------+ 906
ITT01_0029_H11.b : ACTTTCACAACCACGAAGAGATCCCCAACCTCTACTCCCTGCAAAGCTGGCTGGGCATCA
MLN01_0058_B11.b : ACTTTCACAACCACGAGAAGATCCCCAACCTCTACTCCCTGCACAGCTGGCTGGGCATCA


20060611C-004709 : CCACCGTCTTCCTCTTTCGCCTGCAGTGGGTCTTGGGCTTTGTGGTCTTTCTGCTGCCCT
                   ---------+---------+---------+---------+---------+---------+ 966
ITT01_0029_H11.b : CCACCGTCTTtcctcttccctggccgtggttcttggggcttgggggtctttctgctgccc
MLN01_0058_B11.b : CCACCGTCTTCCTCTTTCGCCTGCAGTGGGTCTTGGGCTTTGTGGTCTTTCTGCTGCCCT


20060611C-004709 : GGGCGTCTGTGCCGCTGCGCAGCCTCTTAAACCCATCCACGTCTTCTTTGGACCCTCATT
                   ---------+---------+---------+---------+---------+---------+ 1026
ITT01_0029_H11.b : ctgggcgtttgtgcggctgcccaaacttccttaaacccatccacgtcctttttgggaacc
MLN01_0058_B11.b : GGGCGTCTGTGCCGCTGCGCAGCCTCTTAAACCCATCCACGTCTTCTTTGGACCCTCATT


20060611C-004709 : CTCTCTCTGG..................................................
                   ---------+---------+---------+---------+---------+---------+ 1036
ITT01_0029_H11.b : tccctttctctctctggccatttggttcggtcatttccggcatcatggaaaacctcttct
MLN01_0058_B11.b : CTCTCTCTGGccatgcctctgtcattttcggcatcaatgaaaactcttcctcagtttgaa


20060611C-004709 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1036
ITT01_0029_H11.b : tcagttttaaaagtggcccctctttaatactcaacctggccggggaagcgcctcttcgcc
MLN01_0058_B11.b : aaatgggaccctttcttattccacctgccccgggaggccgtctttccaaacatgccggga


20060611C-004709 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1036
ITT01_0029_H11.b : aaaattgccggaaacctggtgggggttcttgggcctggggggctccaaattctaagggcc
MLN01_0058_B11.b : atccggggggggcctttgggcttctgggggtctatatcttaagggctctctcttgaaaaa


20060611C-004709 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1036
ITT01_0029_H11.b : tccttttggaaacccccaaacacggggctctcagcccaaaacaacacccttt       
MLN01_0058_B11.b : ccccaaacccagggctccaggcccaagaaaaaaccgt