[Overview] [RefSeq] [Assembly & SNP] [Alignment]
Assembly Name: 20060611C-005568
Length:
1,046
Sequence:
[FASTA format sequence]
GTGTAGCTGG GCACCCGGGG CTGTGGGGAG GGCATCTTCG GAGAGTGCAG GGGGAACGCC
TGTCAGACCA GCTTTGCGTG AGTCCTTCCA TCAGCCCTCC CAGCCTCTGG GAGAAGTCTC
AGCCTTGCCT GTGTCCCCCA CTCCCTTCTC GTCCCCGCTC TTTGCCTCTG AGCTCAGACA
CCCCCACTGG TGCCAGAACA CCTTTGTGTC CCAGAGAGCG ACTGGATCGG GAGAGGCCTT
GCTCTCTTTT GGCTTCTCCT CCTAGTCCTG GAGGGGCAGA GGGGGACTTA GTCTTTCAGG
AGTGCATCCT GTGTGCTGAG CCCGAGGGGG AAGCCAGGCC CAGAGGCTAA GCCAGCTGCC
AGGGTCACAC ACAGCCATGT GGCTGTACCT GGCGGTCCTC GTGGGCCTGT ACTACCTCCT
GCGCTGGCAG CGGGAGAGGC AGGTGGTGAG CCACCTGAGG GACAAGTATG TCTTCATCAC
GGGCTGTGAC TCGGGCTTCG GGAACCTGCT GGCCAGGCAG CTGGACCTGC GGGGCTTGAG
GGTCCTGGCT GCATGTCTGA CGGAGCAGGG GGCCCAGCAG CTGAGGAAGC AGACGTCAGA
CAGGCTGGAG ACGGTGCTCC TGGACGTGAC CAAGACAGAG AGCGTCGCTG CGGCCAAGGA
GACTCTGGGG CCTGGTGAAC AATGCTGGCA TCTCCGTAAT CTCTGCTCCC AATGAGTGGC
TGACCAAACA GGACTTCGTG AAGATATTGG ATGTGAACCT GTTGGGGATG GTCGACGTGA
CCCTGCAGCT GCTGCCCCTC GTGAGGAAGA CCAGGGGCCG TGTGGTCAAC GTCTCCAGTG
TCATGGGCCG GGTGTCCCTC TTTGGCGGCG GCTACTGCCT GTCCAAGTAC GGTGTTGAGG
CCTTCTCAGA CTCCCTCAGA GGGAGCTCTC CTACTTTGGG GTGAAGGTGG CTATGATTGA
GCCCGGTTTC TTCAAGACCA ATGACTGCCG CTGAGGTGTT TATGGGAAAC TCCCAGCAGC
ATGGCAGCAG GCAAGCCCAA AGGTCA
SNP mapping information
| SNP ID | Rel. | Chr. | Location (cM) |
|---|
| Locus | Definition | Score | E value | FL | ||
|---|---|---|---|---|---|---|
 |
 | RDH16 | retinol dehydrogenase 16 (all-trans) | 148 | 5e-78 | O |
|
| HSD17B6 | hydroxysteroid (17-beta) dehydrogenase 6 | 141 | 8e-34 | O |
|
| SDR-O | orphan short-chain dehydrogenase / reductase | 130 | 1e-30 | O |
|
| RDH5 | retinol dehydrogenase 5 (11-cis/9-cis) | 115 | 8e-26 | O |
|
| DHRS9 | dehydrogenase/reductase (SDR family) member 9 | 113 | 2e-25 | O |
|
| DHRS9 | dehydrogenase/reductase (SDR family) member 9 | 113 | 2e-25 | O |
|
| BDH1 | 3-hydroxybutyrate dehydrogenase, type 1 | 84.7 | 2e-17 | O |
|
| BDH1 | 3-hydroxybutyrate dehydrogenase, type 1 | 84.7 | 2e-17 | O |
|
| BDH1 | 3-hydroxybutyrate dehydrogenase, type 1 | 84.7 | 2e-17 | O |
|
| HSD17B2 | hydroxysteroid (17-beta) dehydrogenase 2 | 66.2 | 1e-21 | O |
| Locus | Definition | Score | E value | FL |
|---|
| Locus | Definition | Score | E value | FL |
|---|
| Locus | Definition | Score | E value | FL |
|---|
| Locus | Definition | Score | E value | FL |
|---|
|
20060611C-005568 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
LVRM1_0056_B08.b : naattgtcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
TES01_0091_G12.b :
LVRM1_0130_B10.b :
20060611C-005568 : .GTGTAGCTGGGCACCCGGGGCTGTGGGGAGGGCATCTTCGGAGAGTGCAGGGGGAACGC
---------+---------+---------+---------+---------+---------+ 59
LVRM1_0056_B08.b : xGTGTAGCTGGGCACCCGGGGCTGTGGGGAGGGCATCTTCGGAGAGTGCAGGGGGAACGC
TES01_0091_G12.b : ntttttacttgcgttggctctggagtgcGGGGNGACGC
LVRM1_0130_B10.b :
20060611C-005568 : CTGTCAGACCAGCTTTGCGTGAGTCCTTCCATCAGCCCTCCCAGCCTCTGGGAGAAGTCT
---------+---------+---------+---------+---------+---------+ 119
LVRM1_0056_B08.b : CTGTCAGACCAGCTTTGCGTGAGTCCTTCCATCAGCCCTCCCAGCCTCTGGGAGAAGTCT
TES01_0091_G12.b : CTGTCAGACCAGCTTTGCGTGAGTCCTTCCATCAGCCCTCCCAGCCTCTGGGAGAAGTCT
LVRM1_0130_B10.b :
20060611C-005568 : CAGCCTTGCCTGTGTCCCCCACTCCCTTCTCGTCCCCGCTCTTTGCCTCTGAGCTCAGAC
---------+---------+---------+---------+---------+---------+ 179
LVRM1_0056_B08.b : CAGCCTTGCCTGTGTCCCCCACTCCCTTCTCGTCCCCGCTCTTTGCCTCTGAGCTCAGAC
TES01_0091_G12.b : CAGCCTTGCCTGTGTCCCCCACTCCCTTCTCGTCCCCGCTCTTTGCCTCTGAGCTCAGAC
LVRM1_0130_B10.b :
20060611C-005568 : ACCCCCACTGGTGCCAGAACACCTTTGTGTCCCAGAGAGCGACTGGATCGGGAGAGGCCT
---------+---------+---------+---------+---------+---------+ 239
LVRM1_0056_B08.b : ACCCCCACTGGTGCCAGAACACCTTTGTGTCCCAGAGAGCGACTGGATCGGGAGAGGCCT
TES01_0091_G12.b : ACCCCCACTGGTGCCAGAACACCTTTGTGTCCCAGAGAGCGACTGGATCGGGAGAGGCCT
LVRM1_0130_B10.b :
20060611C-005568 : TGCTCTCTTTTGGCTTCTCCTCCTAGTCCTGGAGGGGCAGAGGGGGACTTAGTCTTTCAG
---------+---------+---------+---------+---------+---------+ 299
LVRM1_0056_B08.b : TGCTCTCTTTTGGCTTCTCCTCCTAGTCCTGGAGGGGCAGAGGGGGACTTAGTCTTTCAG
TES01_0091_G12.b : TGCTCTCTTTTGGCTTCTCCTCCTAGTCCTGGAGGGGCGGAGGGGGACTTAGTCTTTCAG
LVRM1_0130_B10.b :
20060611C-005568 : GAGTGCATCCTGTGTGCTGAGCCCGAGGGGGAAGCCAGGCCCAGAGGCTAAGCCAGCTGC
---------+---------+---------+---------+---------+---------+ 359
LVRM1_0056_B08.b : GAGTGCATCCTGTGTGCTGAGCCCGAGGGGGAAGCCAGGCCCAGAGGCTAAGCCAGCTGC
TES01_0091_G12.b : GAGTGCATCCTGTGTGCTGAGCTCGAGGGGGAAGCCAGGCCCAGAGGCTAAGCCAGCTGC
LVRM1_0130_B10.b : nagttgtcx
20060611C-005568 : CAGGGTCACACACAGCCATGTGGCTGTACCTGGCGGTCCTCGTGGGCCTGTACTACCTCC
---------+---------+---------+---------+---------+---------+ 419
LVRM1_0056_B08.b : CAGGGTCACACACAGCCATGTGGCTGTACCTGGTGGTCCTCGTGGGCCTGTACTACCTCC
TES01_0091_G12.b : CAGGGTCACACACAGCCATGTGGGTGTACCTGGCGGTCCTCGTGGGCCTGTACTACCTCC
LVRM1_0130_B10.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCTACCTCC
20060611C-005568 : TGCGCTGGCAGCGGGAGAGGCAGGTGGTGAGCCACCTGAGGGACAAGTATGTCTTCATCA
---------+---------+---------+---------+---------+---------+ 479
LVRM1_0056_B08.b : TGCGCTGGCAGCGGGAGAGGCAGGTGGTGAGCCACCTGAGGGACAAGTATGTCTTCATCA
TES01_0091_G12.b : TGCGCTGGCAGCGGGAGAGGCAGGTGGTGAGCCACCTGAGGGACAAGTATGTCTTCATCA
LVRM1_0130_B10.b : TGCGCTGGCAGCGGGAGAGGCAGGTGGTGAGCCACCTGAGGGACAAGTATGTCTTCATCA
20060611C-005568 : CGGGCTGTGACTCGGGCTTCGGGAACCTGCTGGCCAGGCAGCTGGACCTGCGGGGCTTGA
---------+---------+---------+---------+---------+---------+ 539
LVRM1_0056_B08.b : CGGGCTGTGACTCGGGCTTCGGGAACCTGCTGGCCAGGCAGCTGGACCTGCGGGGCTTGA
TES01_0091_G12.b : CGGGCTGTGACTCGGGCTTCGGGAACCTGCTGGCCAGGCAGCTGGACCTGCGGGGCTTGA
LVRM1_0130_B10.b : CGGGCTGTGACTCGGGCTTCGGGAACCTGCTGGCCAGGCAGCTGGACCTGCGGGGCTTGA
20060611C-005568 : GGGTCCTGGCTGCATGTCTGACGGAGCAGGGGGCCCAGCAGCTGAGGAAGCAGACGTCAG
---------+---------+---------+---------+---------+---------+ 599
LVRM1_0056_B08.b : GGGTCCTGGCTGCATGTCTGACGGAGCAGGGGGCCCAGCAGCTGAGGAAGCAGACGTCAG
TES01_0091_G12.b : GGGTCCTGGCTGCATGTCTGACGGAGCAGGGGGCCCAGCAGCTGAGGAAGCAGACGTCAG
LVRM1_0130_B10.b : GGGTCCTGGCTGCATGTCTGACGGAGCAGGGGGCCCAGCAGCTGAGGAAGCAGACGTCAG
20060611C-005568 : ACAGGCTGGAGACGGTGCTCCTGGACGTGACCAAGACAGAGAGCGTCGCTGCGGCC****
---------+---------+---------+---------+---------+---------+ 655
LVRM1_0056_B08.b : ACAGGCTGGAGACGGTGCTCCTGGACGTGACCAAGACAGAGAGCGTCGCTGCGGCCAAGG
TES01_0091_G12.b : ACAGGCTGGAGACGGTGCTCCTGGACGTGACCAAGACAGAGAGCGTCGCTGCGGCCAANG
LVRM1_0130_B10.b : ACAGGCTGGAGACGGTGCTCCTGGACGTGACCAAGACAGAGAGCGTCGCTGCGGCC****
20060611C-005568 : ********AA**********GGAGA*******CTCTGGGGCCTGGTGAACAATGCTGGCA
---------+---------+---------+---------+---------+---------+ 690
LVRM1_0056_B08.b : AGTGGGTGAGGGAACGTGTGGGGGACAGAGGACTCTGGGGCCTGGTGGACAATGCTGGCA
TES01_0091_G12.b : AGTGGGTGAAGGAGCGTGTGGGGGACAGAGGACTCTGGGGCCTGGTGAACAATGCTGGCA
LVRM1_0130_B10.b : ********AA**********GGAGA*******CTCTGGGGCCTGGTGAACAATGCTGGCA
20060611C-005568 : TCTCCGTAATCTCTG*CTCCCAATGAGTGGCTGACCAAACAGGACTTCGTGAAGATATTG
---------+---------+---------+---------+---------+---------+ 749
LVRM1_0056_B08.b : TTTGCATGC*CCCTGGCTCCCAATGAGT
TES01_0091_G12.b : TTTGCATGC*CCCTGGCTCCCAATGAGTGGCTGAACCAGCAGGACTTCATGGTGATGCTG
LVRM1_0130_B10.b : TCTCCGTAATCTCTG*CTCCCAATGAGTGGCTGACCAAACAGGACTTCGTGAAGATATTG
20060611C-005568 : GATGTGAACCTGTTGGGGATGGTCGACGTGACCCTGCAGCTGCTGCCCCTCGTGAGGAAG
---------+---------+---------+---------+---------+---------+ 809
LVRM1_0056_B08.b :
TES01_0091_G12.b : GATGTGAACCTGTTGGGGATGGTCGACGTGACCCTGCAGCTGCTGCCCCTCGTGAGGAAG
LVRM1_0130_B10.b : GATGTGAACCTGTTGGGGATGGTCGACGTGACCCTGCAGCTGCTGCCCCTCGTGAGGAAG
20060611C-005568 : ACCAGGGGCCGTGTGGTCAACGTCTCCAGTGTCATGGGCCGGGTGTCCCTCTTTGGCGGC
---------+---------+---------+---------+---------+---------+ 869
LVRM1_0056_B08.b :
TES01_0091_G12.b : ACCAAGGGGCGTGTGGTCAACGTCCTCAGTGTCATGGGCCGGGTGTCCCTCTTTTGGCGC
LVRM1_0130_B10.b : ACCAGGGGCCGTGTGGTCAACGTCTCCAGTGTCATGGGCCGGGTGTCCCTCTTTGGCGGC
20060611C-005568 : GGCTACTGCCTGTCCAAGTACGGTGTTGAGGCCTTCTCAGACTCCCTCAG*AGGGAGCTC
---------+---------+---------+---------+---------+---------+ 928
LVRM1_0056_B08.b :
TES01_0091_G12.b : CGCTACTACCTGGTCCAGTACGGGGTTGAAGCCTTCTCCGACTCCCTCAG*AGGGAGCTC
LVRM1_0130_B10.b : GGCTACTGCCTGTCCAAGTACGGTGTTGAGGCCTTCTCAGACTCCCTCAGGAGGGAGCTC
20060611C-005568 : TCCTACTTTGGGGTGAAGGTGGCTATGATTGAGCCCGGTTTCTTCAAGACCA*ATGACTG
---------+---------+---------+---------+---------+---------+ 987
LVRM1_0056_B08.b :
TES01_0091_G12.b : TCCTACTTGGGGGTGAAGGTGGCTGTGATCGACCCTGGCTCCTTCT*GACCATATGACTG
LVRM1_0130_B10.b : TCCTACTTTGGGGTGAAGGTGGCTATGATTGAGCCCGGTTTCTTCAAGACCA*ATgtaac
20060611C-005568 : CCGCTGAGGTGTTTATGGGAAACTCCCAGCAGCATGGCAGCAGGCAAGCCCAAAGGTCA.
---------+---------+---------+---------+---------+---------+ 1046
LVRM1_0056_B08.b :
TES01_0091_G12.b : CCGCTGAGGTGTTTATGGGAAACTCCCAGCAGCATGGCAGCAGGCAAGCCCAAAGGTCAg
LVRM1_0130_B10.b : caaacctgaggcaatttctcagggctacaagacagcatggaatcaagccagcccagagat
20060611C-005568 : ............................................................
---------+---------+---------+---------+---------+---------+ 1046
LVRM1_0056_B08.b :
TES01_0091_G12.b : gattcccttgggagaaccattccggggttaattcctgaagaacttagacctattgaaccc
LVRM1_0130_B10.b : caaggatctctatggggacacattcctggccttatgtgagaaagcagtttgctcaatgga
20060611C-005568 : ............................................................
---------+---------+---------+---------+---------+---------+ 1046
LVRM1_0056_B08.b :
TES01_0091_G12.b : caggggccggggaatcgtctttgtggaccaatggttggggaagccctgaaccctgtcccc
LVRM1_0130_B10.b : gacaagttgcaatcaggatctctccttggtgactgactgcatggagcacgccctgacctc
20060611C-005568 : ............................................................
---------+---------+---------+---------+---------+---------+ 1046
LVRM1_0056_B08.b :
TES01_0091_G12.b : cccgagcggaattattcggggggggggaccagtttttctttcccccaagaagaatgggcc
LVRM1_0130_B10.b : ctgccaaccccgcacgc
20060611C-005568 : ............................................................
---------+---------+---------+---------+---------+---------+ 1046
LVRM1_0056_B08.b :
TES01_0091_G12.b : ccctctt
LVRM1_0130_B10.b :
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