[Overview] [RefSeq] [Assembly & SNP] [Alignment]
Assembly Name: 20060611C-006078
Length:
983
Sequence:
[FASTA format sequence]
AGGCAGAAGA AGACAGACAG GCCAACAGGT TCAGACAGCC TGCTCGCCGC TCCACGCCCC
CCACTGCTCT CCTGCCCCAG CGCCGAGATG GATACCCCTG TTAGGGACCT AGACAAGTTC
ATCGAAGACC ACCTCCTGCC AAACACATGT TTCCGAACGC AGGTCAAGGA AGCCATCGAC
ATCGTCTGCG GTTTCCTGAA GGAGAGGTGC TTCCAGGGGA CCGCCGACCC TGTTCGCGTC
TCCAAAGTTG TGAAGGGTGG CTCCTCGGGC AAAGGCACGA CCCTCAGGGG CCGATCAGAT
GCTGACCTCG TCGTCTTCCT CACCAAGCTC ACAAGTTTTG AGGATCAGCT TCAGCTCCGA
GAAGAATTCA TCCAGGAAAT TCGGAGACAG CTGGAAGCCT GTCAAAAAGA ACAAAAGTTT
AAAGTGACGT TTGAGGTCCA GACTCCACGA CAGGAGAACC CCCGTGCCCT CAGCTTCGTG
CTCAGCTCCC CCCAGCTCCA GCAGGAGGTG GAGTTTGATG TCCTGCCCGC CTTTGATGCC
CTGGGTCAGT GGACCCCGGG CTACAAACCC AACCCGGAAA TCTACGTCCA GCTTATCAAA
GAGTGCAAGT CCCTAGGGAA AGAGGGCGAG TTTTCCACCT GCTTCACGGA GCTGCAGCGA
GACTTCCTGA GGAACCGACC AACCAAGCTG AAGAGCCTCA TCCGCCTTGT CAAGCACTGG
TACCAGACGT GTAAGAAGCC TCATGGAAAT AAACTGCCCC CACAGTATGC CCTGGAGCTC
CTGACAGTCT ATGCATGGGA GCAAGGAAGC GGGAAAACAG ATTTTAGCAC AGCTCAGGGA
TTTCAGACTG TTTTGGAATT AGTCCTAAAG CATAAGAAGC TTTGCATCTT CTGGGAAGCA
TATTATAACT TTAAAAACCC TGTCGTTGGA CGATATCTGA CTGAGCAACT CAAGAAACCC
AGGCCTGTGA TTCTGGACCC GGC
SNP mapping information
| SNP ID | Rel. | Chr. | Location (cM) |
|---|
| Locus | Definition | Score | E value | FL | ||
|---|---|---|---|---|---|---|
 |
 | OAS1 | 2',5'-oligoadenylate synthetase 1, 40/46kDa | 436 | e-122 | O |
|
| OAS1 | 2',5'-oligoadenylate synthetase 1, 40/46kDa | 436 | e-122 | O |
|
| OAS1 | 2',5'-oligoadenylate synthetase 1, 40/46kDa | 436 | e-122 | O |
|
| OAS3 | 2'-5'-oligoadenylate synthetase 3, 100kDa | 319 | 3e-87 | |
|
| OAS2 | 2'-5'-oligoadenylate synthetase 2, 69/71kDa | 289 | 3e-78 | |
|
| OAS2 | 2'-5'-oligoadenylate synthetase 2, 69/71kDa | 289 | 3e-78 | |
|
| OASL | 2'-5'-oligoadenylate synthetase-like | 199 | 4e-51 | O |
|
| OASL | 2'-5'-oligoadenylate synthetase-like | 125 | 4e-29 | O |
|
| OAS2 | 2'-5'-oligoadenylate synthetase 2, 69/71kDa | 59.3 | 5e-09 | O |
| Locus | Definition | Score | E value | FL |
|---|
| Locus | Definition | Score | E value | FL |
|---|
| Locus | Definition | Score | E value | FL |
|---|
| Locus | Definition | Score | E value | FL |
|---|
|
20060611C-006078 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
AMP01_0025_C08.b : attttaccgaccctaaxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
THY01_0057_B01.b :
TES01_0075_B06.b :
20060611C-006078 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
AMP01_0025_C08.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
THY01_0057_B01.b : tttttggatgaacxxxxxxxxxxxxxxxxxxxxxxxxx
TES01_0075_B06.b :
20060611C-006078 : ...........................................AGGCAGAAGAAGACAGA
---------+---------+---------+---------+---------+---------+ 17
AMP01_0025_C08.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGGCAGAAGAAGACAGA
THY01_0057_B01.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGAAGAAGACAGA
TES01_0075_B06.b : nttggcgttggctctgggaatctacagcagcccaactcaggcagaagaagacaga
20060611C-006078 : CAGGCCAACAGGTTCAGACAGCCTGCTCGCCGCTCCACGCCCCCCACTGCTCTCCTGCCC
---------+---------+---------+---------+---------+---------+ 77
AMP01_0025_C08.b : CAGGCCAACAGGTTCAGACAGCCTGCTCGCCGCTCCACGCCCCCCACTGCTCTCCTGCCC
THY01_0057_B01.b : CAGGCCAACAGGTTCAGACAGCCTGCTCGCCGCTCCACGCCCCCCACTGCTCTCCTGCCC
TES01_0075_B06.b : caggccaacaggttcagatagcctgctcgccgctccacgccccccactgctctcctgccc
20060611C-006078 : CAGCGCCGAGATGGATACCCCTGTTAGGGACCTAGACAAGTTCATCGAAGACCACCTCCT
---------+---------+---------+---------+---------+---------+ 137
AMP01_0025_C08.b : CAGCGCCGAGATGGATACCCCTGTTAGGGACCTAGACAAGTTCATCGAAGACCACCTCCT
THY01_0057_B01.b : CAGCGCCGAGATGGATACCCCTGTTAGGGACCTAGACAAGTTCATCGAAGACCACCTCCT
TES01_0075_B06.b : cagcgccgagatggATACCCCTGTTAGGGACCTAGACAAGTTCATCGAAGACCACCTCCT
20060611C-006078 : GCCAAACACATGTTTCCGAACGCAGGTCAAGGAAGCCATCGACATCGTCTGCGGTTTCCT
---------+---------+---------+---------+---------+---------+ 197
AMP01_0025_C08.b : GCCAAACACATGTTTCCGAACGCAGGTCAAGGAAGCCATCGACATCGTCTGCGGTTTCCT
THY01_0057_B01.b : GCCAAACACATGTTTCCGAACGCAGGTCAAGGAAGCCATCGACATCGTCTGCGGTTTCCT
TES01_0075_B06.b : GCCAAACACATGTTTCCGAACGCAGGTCAAGGAAGCCATCGACATCGTCTGCGGTTTCCT
20060611C-006078 : GAAGGAGAGGTGCTTCCAGGGGACCGCCGACCCTGTTCGCGTCTCCAAAGTTGTGAAGGG
---------+---------+---------+---------+---------+---------+ 257
AMP01_0025_C08.b : GAAGGAGAGGTGCTTCCAGGGGACCGCCGACCCTGTTCGCGTCTCCAAAGTTGTGAAGGG
THY01_0057_B01.b : GAAGGAGAGGTGCTTCCAGGGGACCGCCGACCCTGTTCGCGTCTCCAAAGTTGTGAAGGG
TES01_0075_B06.b : GAAGGAGAGGTACTTCCAGGGGACCGCCGACCCTGTTCGCGTCTCCAAAGTTGTGAAGGG
20060611C-006078 : TGGCTCCTCGGGCAAAGGCACGACCCTCAGGGGCCGATCAGATGCTGACCTCGTCGTCTT
---------+---------+---------+---------+---------+---------+ 317
AMP01_0025_C08.b : TGGCTCCTCGGGCAAAGGCACGACCCTCAGGGGCCGATCAGATGCTGACCTCGTCGTCTT
THY01_0057_B01.b : TGGCTCCTCGGGCAAGGGCACGACCCTCAGGGGCCGATCAGATGCTGACCTCGTCGTCTT
TES01_0075_B06.b : TGGCTCCTCAGGCAAAGGCACGACCCTCAGGGGCCGATCAGATGCTGACCTCGTCGTCTT
20060611C-006078 : CCTCACCAAGCTCACAAGTTTTGAGGATCAGCTTCAGCTCCGAGAAGAATTCATCCAGGA
---------+---------+---------+---------+---------+---------+ 377
AMP01_0025_C08.b : CCTCACCAAGCTCACAAGTTTTGAGGATCAGCTTCAGCTCCGAGAAGAATTCATCCAGGA
THY01_0057_B01.b : CCTCACCAAGCTCACAAGTTTTGAGGATCAGCTTCAGCTCCGAGAAGAATTCATCCAGGA
TES01_0075_B06.b : CCTCACCAAGCTCACAAGTTTTGAGGATCAGCTTCAGCTCCGAGAAGAATTCATCCAGGA
20060611C-006078 : AATTCGGAGACAGCTGGAAGCCTGTCAAAAAGAACAAAAGTTTAAAGTGACGTTTGAGGT
---------+---------+---------+---------+---------+---------+ 437
AMP01_0025_C08.b : AATTCGGAGACAGCTGGAAGCCTGTCAAAAAGAACAAAAGTTTAAAGTGACGTTTGAGGT
THY01_0057_B01.b : AATTCGGAGACAGCTGGAAGCCTGTCAAAAAGAACAAAAGTTTAAAGTGACGTTTGAGGT
TES01_0075_B06.b : AATTCGGAGACAGCTGGAAGCCTGTCAAAAAGAACAAAAGTTTAAAGTGACGTTTGAGGT
20060611C-006078 : CCAGACTCCACGACAGGAGAACCCCCGTGCCCTCAGCTTCGTGCTCAGCTCCCCCCAGCT
---------+---------+---------+---------+---------+---------+ 497
AMP01_0025_C08.b : CCAGACTCCACGACAGGAGAACCCCCGTGCCCTCAGCTTCGTGCTCAGCTCCCCCCAGCT
THY01_0057_B01.b : CCAGACTCCACGACAGGAGAACCCCCGTGCCCTCAGCTTCGTGCTCAGCTCCCCCCAGCT
TES01_0075_B06.b : CCAGACTCCACGACAGGAGAACCCCCGTGCCCTCAGCTTCGTGCTCAGCTCCCCCCAGCT
20060611C-006078 : CCAGCAGGAGGTGGAGTTTGATGTCCTGCCCGCCTTTGATGCCCTGGGTCAGTGGACCCC
---------+---------+---------+---------+---------+---------+ 557
AMP01_0025_C08.b : CCAGCAGGAGGTGGAGTTTGATGTCCTGCCCGCCTTTGATGCCCTGGGTCAGTGGACCCC
THY01_0057_B01.b : CCAGCAGGAGGTGGAGTTTGATGTCCTGCCCGCCTTTGATGCCCTGGGTCAGTGGACCCC
TES01_0075_B06.b : CCAGCAGGAGGTGGAGTTTGATGTCCTGCCCGCCTTTGATGCCCTGGGTCAGTGGACCCC
20060611C-006078 : GGGCTACAAACCCAACCCGGAAATCTACGTCCAGCTTATCAAAGAGTGCAAGTCCCTAGG
---------+---------+---------+---------+---------+---------+ 617
AMP01_0025_C08.b : GGGCTACAAACCCAACCCGGAAATCTACGTCCAGCTTATCAAAGAGTGCAAGTCCCTAGG
THY01_0057_B01.b : GGGCTACAAACCCAACCCGGAAATCTACGTCCAGCTTATCAAAGAGTGCAAGTCCCTAGG
TES01_0075_B06.b : GGGCTACAAACCCAACCCGGAAATCTACGTCCAGCTTATCAAAGAGTGCAAGTCCCTAGG
20060611C-006078 : GAAAGAGGGCGAGTTTTCCACCTGCT*TCACGGAGCTGCAGCGAGACTTCCTGAGGAACC
---------+---------+---------+---------+---------+---------+ 676
AMP01_0025_C08.b : GAAAGAGGGCGAGTTTTCCACCTGCT*TCACGGAGCTGCAGCGAGACTTCCCGAGGAACC
THY01_0057_B01.b : GAAAGAGGGCGAGTTTTCCACCTGCT*TCACGGAGCTGCAGCGAGACTTCCTGAGGAACC
TES01_0075_B06.b : GAAAGAGGGCGAGTTTTCCACCTGCTTTCACG*AGCTGCAGCGAGACTTCCTGAGGAACC
20060611C-006078 : GACCAACCAAGCTGAAGAGCCTCATCCGCCTTGTCAAGCACTGGTACCAGACGTGTAAGA
---------+---------+---------+---------+---------+---------+ 736
AMP01_0025_C08.b : GACCCACCAAGCTGAAGAGCCTCATCCGCCTTGTCAAGCACTGGTACCAGACGTGTAAGA
THY01_0057_B01.b : GACCAACCAAGCTGAAGAGCCTCATCCGCCTTGTCAAGCACTGGTACCAGACGTGTAAGA
TES01_0075_B06.b : GACCAACCA*GCTGAAGAGCCTCATCCGCCTTGTCAAGCACTGGTACCAGACGTGTAAGA
20060611C-006078 : AGCCTCATGGAAATAAACTGCCCCCACAGTATGCCCT*GGAGCTCCTGACAGTCTATGCA
---------+---------+---------+---------+---------+---------+ 795
AMP01_0025_C08.b : AGCCTCATGGAAATAAACTGCCCCCACAGTATGCCCT*GNAGCTCCTGACAGTCTATGCA
THY01_0057_B01.b : AGCCTCATGGAAATAAACTGCCCCCACAGTATGCCCT*GGAGCTCCTGACAGTCTATGCA
TES01_0075_B06.b : AGC*TCATGGAAATAAACTGCCCCCACAGTATGCCCTTGGAGCTCCTGAAAGTCTTTGCT
20060611C-006078 : TGGGAGCAAGGAAGCGGGAAAACAGATTTTAGCACAGCTCAGGGATTTCAGACTGTTTTG
---------+---------+---------+---------+---------+---------+ 855
AMP01_0025_C08.b : TGGGAACAAGGAAGCGGGGAAACAGATTTTAGCACAcctcagggatttcaaactgttttt
THY01_0057_B01.b : TGGGAGCAAGGAAGCGGGAAAACAGATTTTAGCACAGCTCAGGGATTTCAGACTGTTTTG
TES01_0075_B06.b : TGGGAACAAGGAACCGGGAAAACcgaatttaccccgctccaggaattccaactgttttgg
20060611C-006078 : GAATTAGTCCTAAAGCATAAGAAGCTTTGCATCTTCTGGGAAGCATATTATAACTTTAAA
---------+---------+---------+---------+---------+---------+ 915
AMP01_0025_C08.b : gaatttattcctaaagcataagaagcttggcatcctctggaagcctattaaaacttaaaa
THY01_0057_B01.b : GAATTAGTCCTAAAGCATAAGAAGCTTTGCATCTTCTGGGAAGCATATTATAACTTTAAA
TES01_0075_B06.b : aatatccctaaaccataaaaagtttttcatcttccgggaaaccttttttaacttttaaaa
20060611C-006078 : AACCCTGTCGTTGGACGATATCTGACTGAGCAACTCAAGAAACCCAGGCCTGTGATTCTG
---------+---------+---------+---------+---------+---------+ 975
AMP01_0025_C08.b : ccccgtccttggacgaaatctactgaaccactcaaaaacccagcctgggatttggaaccg
THY01_0057_B01.b : AACCCTGTCGTTGGACGATATCTGACTGAGCAACTCAAGAAACCCAGGCCTGTGATTCTG
TES01_0075_B06.b : acccctgtccttggaaaattttcgcctgaccacccccaaaaacccgggcccgggaatttg
20060611C-006078 : GACCCGGC....................................................
---------+---------+---------+---------+---------+---------+ 983
AMP01_0025_C08.b : ctgaccctaagcaacttttgtgggggaaacaatacactgcaccccctgtaaaagggccca
THY01_0057_B01.b : GACCCGGCtgaccctacaggcaacgttggtgggtggaaacccatacagctgggcagcagc
TES01_0075_B06.b : ggacccgggtaacccttaagggaattgtgtgggggggaaaaaaaaaaaattgggaaccct
20060611C-006078 : ............................................................
---------+---------+---------+---------+---------+---------+ 983
AMP01_0025_C08.b : atcggcgaatacccgctttttaaagaacaggtcccggggaatcgaagggtccccaagcca
THY01_0057_B01.b : tggtagaaggggcactaatcttggctgaattatccggtgcttttttaaatggaaaccggg
TES01_0075_B06.b : ttggaaaaagggcccacactcgggcgaaaaattcccggcttttttaaaaaggaaagagtc
20060611C-006078 : ............................................................
---------+---------+---------+---------+---------+---------+ 983
AMP01_0025_C08.b : agcccccaat
THY01_0057_B01.b : tccccgggtgggaatcccgga
TES01_0075_B06.b : ccccgggggaacccggaaaggggtcccccgaggaaaaagccccctcccggaggggaaaat
20060611C-006078 : ............................................................
---------+---------+---------+---------+---------+---------+ 983
AMP01_0025_C08.b :
THY01_0057_B01.b :
TES01_0075_B06.b : attttatgggcccaaaaacatcttaaaaagaggatcccgtgaacacccgggaaaaccccc
20060611C-006078 : ............................................................
---------+---------+---------+---------+---------+---------+ 983
AMP01_0025_C08.b :
THY01_0057_B01.b :
TES01_0075_B06.b : ccttcttatgggggggggggcggaaccctctctcctaagggcccattttgtgttacacaa
20060611C-006078 : ............................................................
---------+---------+---------+---------+---------+---------+ 983
AMP01_0025_C08.b :
THY01_0057_B01.b :
TES01_0075_B06.b : acctcacacaaagtggttgtttcccctctgtgtgttatttggn
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