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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20060611C-007736

Length: 807

Sequence:  [FASTA format sequence]
GATGGTGCCC ATGGTACAGG TTCCCTGACT GTCTGGATTC CGGTTGCAGT TTGTTCAGTT
TTGTTTTTAA AGATACGTGT TTGCAGACGG GCACATGGAG GCTAGAGACA AGCAAGTCCT
TCGCTCCCTT CGCCTGGAGC TGGGTGCAGA GGTGCTGGTA GAGGGGCTGG TTCTCCAGTA
TCTTTACCAG GAAGGGATCT TGACGGAAAA CCACGTTCAA GAAATTAAAG CTCAAGCTAC
AGGCCTTCGG AAAACAATGC TGCTGCTGGA TATCCTACCT TCCAGGGGTC CTAAAGCATT
CGATGTATTC CTAGATTCCC TGCAGGAATT CCCTTGGGTA AGGGAGAAGC TGGAGAAGGC
AAGAGAAGAA GCCATAGTTG AGCTGCCTGC AGATGACGCG ATGGCTGGAA TCCCCCCGCA
CATCCTCAAT AGCTCCCCGT CCGACCGGCA GATCAACCAG CTGGCGCAGA GGCTGGGCCC
CGAGTGGGAG CCCGTGGTGC TGTCTCTGGG CCTGTCCCAG ACCGACATCT ACCGCTGTAA
GGCCAACCAC CCCCACAACG TCCAGTCCCA GGTGGTGGAG GCCTTTGTCC GCTGGAGGCA
GCGCTTCGGA AAGCAGGCCA CCTTCCAGAG CCTTCACAGG AGCCTCCAGG CCATGGAGGT
GGACCCGTCT GTGCTCCAGC ACATGTTGGA ATGATGGTGC ACCCATTAAC GCCCGGGGCC
CCCTGTGGCA TGTGCCAAAT CCTCACTCTC ACCCCGGGCC AGTAAATTTT GGGGGGATTT
TTTTGTTGTT GGTGGTGGTT TTTGGGC

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		CRADD	CASP2 and RIPK1 domain containing adaptor with death domain	328	4e-90	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL

Alignment:      TOP

20060611C-007736 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
OVRM1_0211_B01.b :                                  agttgtcxxxxxxxxxxxxxxxxxxxx
LNG01_0102_H09.b :         nntttagatggacaagacagttgnacxxxxxxxxxxxxxxxxxxxxxxxxxx
OVR01_0070_E06.b :       nnnnggcttggactatgacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
SPL01_0050_H11.b : ntttttttttnnnnggaatggactntgacagtttgtcxxxxxxxxxxxxxxxxxxxxxxx


20060611C-007736 : ................................GATGGTGCCCATGGTACAGGTTCCCTGA
                   ---------+---------+---------+---------+---------+---------+ 28
OVRM1_0211_B01.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGATGGTGCCCATGGTACAGGTTCCCTGA
LNG01_0102_H09.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGATGGTGCCCATGGTACAGGTTCCCTGA
OVR01_0070_E06.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGATGGTGCCCATGGTACAGGTTCCCTGA
SPL01_0050_H11.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGATGGTGCCCATGGTACAGGTTCCCTGA


20060611C-007736 : CTGTCTGGATTCCGGTTGCAGTTTGTTCAGTTTTGTTTTTAAAGATACGTGTTTGCAGAC
                   ---------+---------+---------+---------+---------+---------+ 88
OVRM1_0211_B01.b : CTGTCTGGATTCCGGTTGCAGTTTGTTCAGTTTTGTTTTTAACGATACGTGTTTGCAGAC
LNG01_0102_H09.b : CTGTCTGGATTCCGGTTGCAGTTTGTTCAGTTTTGTTTTTAAAGATACGTGTTTGCAGAC
OVR01_0070_E06.b : CTGTCTGGATTCCGGTTGCAGTTTGTTCAGTTTTGTTTTTAAAGATACGTGTTTGCAGAC
SPL01_0050_H11.b : CTGTCTGGATTCCGGTTGCAGTTTGTTCAGTTTTGTTTTTAAAGATACGTGTTTGCAGAC


20060611C-007736 : GGGCACATGGAGGCTAGAGACAAGCAAGTCCTTCGCTCCCTTCGCCTGGAGCTGGGTGCA
                   ---------+---------+---------+---------+---------+---------+ 148
OVRM1_0211_B01.b : GGGCACATGGAGGCTAGAGACAAGCAAGTCCTTCGCTCCCTTCGCCTGGAGCTGGGTGCA
LNG01_0102_H09.b : GGGCACATGGAGGCTAGAGACAAGCAAGTCCTTCGCTCCCTTCGCCTGGAGCTGGGTGCA
OVR01_0070_E06.b : GGGCACATGGAGGCTAGAGACAAGCAAGTCCTTCGCTCCCTTCGCCTGGAGCTGGGTGCA
SPL01_0050_H11.b : GGGCACATGGAGGCTAGAGACAAGCAAGTCCTTCGCTCCCTTCGCCTGGAGCTGGGTGCA


20060611C-007736 : GAGGTGCTGGTAGAGGGGCTGGTTCTCCAGTATCTTTACCAGGAAGGGATCTTGACGGAA
                   ---------+---------+---------+---------+---------+---------+ 208
OVRM1_0211_B01.b : GAGGTGCTGGTAGAGGGGCTGGTTCTCCAGTATCTTTACCAGGAAGGGATCTTGACGGAA
LNG01_0102_H09.b : GAGGTGCTGGTAGAGGGGCTGGTTCTCCAGTATCTTTACCAGGAAGGGATCTTGACGGAA
OVR01_0070_E06.b : GAGGTGCTGGTAGAGGGGCTGGTTCTCCAGTATCTTTACCAGGAAGGGATCTTGACGGAA
SPL01_0050_H11.b : GAGGTGCTGGTAGAGGGGCTGGTTCTCCAGTATCTTTACCAGGAAGGGATCTTGACGGAA


20060611C-007736 : AACCACGTTCAAGAAATTAAAGCTCAAGCTACAGGCCTTCGGAAAACAATGCTGCTGCTG
                   ---------+---------+---------+---------+---------+---------+ 268
OVRM1_0211_B01.b : AACCACGTTCAAGAAATTAAAGCTCAAGCTACAGGCCTTCGGAAAACAATGCTGCTGCTG
LNG01_0102_H09.b : AACCACGTTCAAGAAATTAAAGCTCAAGCTACAGGCCTTCGGAAAACAATGCTGCTGCTG
OVR01_0070_E06.b : AACCACGTTCAAGAAATTAAAGCTCAAGCTACAGGCCTTCGGAAAACAATGCTGCTGCTG
SPL01_0050_H11.b : AACCACGTTCAAGAAATTAAAGCTCAAGCTACAGGCCTTCGGAAAACAATGCTGCTGCTG


20060611C-007736 : GATATCCTACCTTCCAGGGGTCCTAAAGCATTCGATGTATTCCTAGATTCCCTGCAGGAA
                   ---------+---------+---------+---------+---------+---------+ 328
OVRM1_0211_B01.b : GATATCCTACCTTCCAGGGGTCCTAAAGCATTCGATGTATTCCTAGATTCCCTGCAGGAA
LNG01_0102_H09.b : GATATCCTACCTTCCAGGGGTCCTAAAGCATTCGATGTATTCCTAGATTCCCTGCAGGAA
OVR01_0070_E06.b : GATATCCTACCTTCCAGGGGTCCTAAAGCATTCGATGTATTCCTAGATTCCCTGCAGGAA
SPL01_0050_H11.b : GATATCCTACCTTCCAGGGGTCCTAAAGCATTCGATGTATTCCTAGATTCCCTGCAGGAA


20060611C-007736 : TTCCCTTGGGTAAGGGAGAAGCTGGAGAAGGCAAGAGAAGAAGCCATAGTTGAGCTGCCT
                   ---------+---------+---------+---------+---------+---------+ 388
OVRM1_0211_B01.b : TTCCCTTGGGTAAGGGAGAAGCTGGAGAAGGCAAGAGAAGAAGCCATAGTTGAGCTGCCT
LNG01_0102_H09.b : TTCCCTTGGGTAAGAGAGAAGCTGGAGAAGGCAAGAGAAGAAGCCATAGTTGAGCTGCCT
OVR01_0070_E06.b : TTCCCTTGGGTAAGGGAGAAGCTGGAGAAGGCAAGAGAAGAAGCCATAGTTGAGCTGCCT
SPL01_0050_H11.b : TTCCCTTGGGTAAGGGAGAAGCTGGAGAAGGCAAGAGAAGAAGCCATAGTTGAGCTGCCT


20060611C-007736 : GCAGATGACGCGATGGCTGGAATCCCCCCGCACATCCTCAATAGCTCCCCGTCCGACCGG
                   ---------+---------+---------+---------+---------+---------+ 448
OVRM1_0211_B01.b : GCAGATGACGCGATGGCTGGAATCCCCCCGCACATCCTCAATAGCTCCCCGTCCGACCGG
LNG01_0102_H09.b : GCAGATGACGCGATGGCTGGAATCCCCCCGCACATCCTCAATAGCTCCCCGTCCGACCGG
OVR01_0070_E06.b : GCAGATGACGCGATGGCTGGAATCCCCCCGCACATCCTCAATAGCTCCCCGTCCGACCGG
SPL01_0050_H11.b : GCAGATGACGCGATGGCTGGAATCCCCCCGCACATCCTCAATAGCTCCCCGTCCGACCGG


20060611C-007736 : CAGATCAACCAGCTGGCGCAGAGGCTGGGCCCCGAGTGGGAGCCCGTGGTGCTGTCTCTG
                   ---------+---------+---------+---------+---------+---------+ 508
OVRM1_0211_B01.b : CAGATCAACCAGCTGGCGCAGAGGCTGGGCCCCGAGTGGGAGCCCGTGGTGCTGTCTCTG
LNG01_0102_H09.b : CAGATCAACCAGCTGGCGCAGAGGCTGGGCCCCGAGTGGGAGCCCGTGGTGCTGTCTCTG
OVR01_0070_E06.b : CAGATCAACCAGCTGGCGCAGAGGCTGGGCCCCGAGTGGGAGCCCGTGGTGCTGTCTCTG
SPL01_0050_H11.b : CAGATCAACCAGCTGGCGCAGAGGCTGGGCCCCGAGTGGGAGCCCGTGGTGCTGTCTCTG


20060611C-007736 : GGCCTGTCCCAGACCGACATCTACCGCTGTAAGGCCAACCACCCCCACAACGTCCAGTCC
                   ---------+---------+---------+---------+---------+---------+ 568
OVRM1_0211_B01.b : GGCCTGTCCCAGGCCGACATCTACCGCTGTAAGGCCAACCACCCCCACAACGTGCAGTCC
LNG01_0102_H09.b : GGCCTGTCCCAGACCGACATCTACCGCTGTAAGGCCAACCACCCCCACAACGTCCAGTCC
OVR01_0070_E06.b : GGCCTGTCCCAGACCGACATCTACCGCTGTAAGGCCAACCACCCCCACAACGTCCAGTCC
SPL01_0050_H11.b : GGCCTGTCCCAGACCGACATCTACCGCTGTAAGGCCAACCACCCCCACAACGTCCAGTCC


20060611C-007736 : CAGGTGGTGGAGGCCTTTGTCCGCTGGAGGCAGCGCTTCGGAAAGCAGGCCACCTTCCAG
                   ---------+---------+---------+---------+---------+---------+ 628
OVRM1_0211_B01.b : CAGGTGGTGGAGGCCTTTGTCCGCTGGAGGCAGCGCTTCGGAAAGCAGGCCACCTTCCAG
LNG01_0102_H09.b : CAGGTGGTGGAGGCCTTTGTCCGCTGGAGGCAGCGCTTCGGAAAGCAGGCCACCTTCCAG
OVR01_0070_E06.b : CAGGTGGTGGAGGCCTTTGTCCGCTGGAGGCAGCGCTTCGGAAAGCAGGCCACCTTCCAG
SPL01_0050_H11.b : CAGGTGGTGGAGGCCTTTGTCCGCTGGAGGCAGCGCTTCGGAAAACAGGCCACCTTCCAG


20060611C-007736 : AGCCTTCACAGGAGCCTCCAGGCCATGGAGGTGGACCCGTCTGTGCTCCAGCACATGTTG
                   ---------+---------+---------+---------+---------+---------+ 688
OVRM1_0211_B01.b : AGCCTTCACAGGAGCCTCCAGGCCATGGAGGTGGACCCGTCTGTGCTCCAGGACATGTTG
LNG01_0102_H09.b : AGCCTTCACAGGAGCCTCCAGGCCATGGAGGTGGACCCGTCTGTGCTCCANCACATGTTG
OVR01_0070_E06.b : AGCCTTCACAGGAAGCCTCAGGCCATGGAGGTGGACCCGTCTGTGCTCCAGCACATGTTG
SPL01_0050_H11.b : AGCCTTCACAGGAGCCTCCAGGCCATGGAGGTGGACCCGTCTGTGCTCCAGCACATGTTG


20060611C-007736 : GAATGATGGTGCACCCATTAACGCCC*GGGGCCCCCTGTGGCATGTGCCAAATCCTCACT
                   ---------+---------+---------+---------+---------+---------+ 747
OVRM1_0211_B01.b : GAATGATGGTGCACCCATTAACGCCCAGGGGCCCCCTGTGGCATGTGCCAAATCCTCACT
LNG01_0102_H09.b : GAATGATGGTGCACCCATTAACACCC*GGGGCCCCCCGTGGCATGTGCCAGATCCTCACT
OVR01_0070_E06.b : GAATGATGGTGCACCCATTAACACCC*GGGGCCCCCCGTGGCATGTGCCCGATCCTCACT
SPL01_0050_H11.b : TAATGATGGTGCACCCATTTACACCC*GGGGCCCCCCGTGGCATGTGCCAGATCCTCACT


20060611C-007736 : CTCACCCCGGGCCAGTAAATTTTGGGGGGATTTTTTTGTTGTTGGTGGTGGTTTTTGGGC
                   ---------+---------+---------+---------+---------+---------+ 807
OVRM1_0211_B01.b : CTCACCC                                                    
LNG01_0102_H09.b : CTCACCCggggcagggaaatttgggggaatttttttgtgttggtgttgnttttgtggcct
OVR01_0070_E06.b : CTCACCCCGGGCCAGTAAATTT*GGGGGAATTTTTTTGTTGGTGGTGGTGGTTTTTGGGC
SPL01_0050_H11.b : CTCACCCGGGGGCAGTAAATTTTGGGGGGATTTTTTTGTTGTTGATGGTTGTTTTTGGGn


20060611C-007736 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 807
OVRM1_0211_B01.b :                                                             
LNG01_0102_H09.b : tttatgggtttttgaaatgnngaaatttggtatttccggatnaattttcatttaaaggan
OVR01_0070_E06.b : cttttagtgatccttccataaaaggaaaaaatgcgaatttcccttggacattttcctgaa
SPL01_0050_H11.b : ctttttatgaatccttccataaaaggaaataaggccatttcccatttaaaatttccttaa


20060611C-007736 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 807
OVRM1_0211_B01.b :                                                             
LNG01_0102_H09.b : gatgaaaaactatatttcccacatantgcatnaaaaaaacattgagntcccatgttcagg
OVR01_0070_E06.b : aaggaggattacctgaatagtttcccccccctgcctgcttgacaaattccatggggccca
SPL01_0050_H11.b : aaataaggaaaaactaaaagattttccatatttcctaaatttaaaattcattaaatcaca


20060611C-007736 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 807
OVRM1_0211_B01.b :                                                             
LNG01_0102_H09.b : gatggncttttttgaacctcccagtttaaagcggtgtagccaacaaagaacaaatccgtt
OVR01_0070_E06.b : atgcctcaagaaggccattatttgaaactcggcgggttttaattgggggggtggcccttc
SPL01_0050_H11.b : ttgctacaaaaatagcattaatttataaacaaacttattttaatt              


20060611C-007736 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 807
OVRM1_0211_B01.b :                                                             
LNG01_0102_H09.b : taaagtatccatataaaaaaagcaaaaactgttgtaanataaatatattctgcgtttata
OVR01_0070_E06.b : aaaaaaccgaatccatcccaatggcccccaaaaaaaaaaaaaaaaaaaaggccccatggg
SPL01_0050_H11.b :                                                             


20060611C-007736 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 807
OVRM1_0211_B01.b :                                                             
LNG01_0102_H09.b : tgaacttgaaaaaaacnttacatattcttaacttttacaaagagancataactaaanatt
OVR01_0070_E06.b : ccttaaactggcggtcccggccccctctaaaaaacccctgcaggggcccagccttacccc
SPL01_0050_H11.b :                                                             


20060611C-007736 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 807
OVRM1_0211_B01.b :                                                             
LNG01_0102_H09.b : cacacaaacgggannnataataaaaggatgctgaagaannccttaaatatgatagaaata
OVR01_0070_E06.b : aaaccgacttttttgtacaaagggggcccctaagtgggagcctaataataacccagccat
SPL01_0050_H11.b :                                                             


20060611C-007736 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 807
OVRM1_0211_B01.b :                                                             
LNG01_0102_H09.b : aaaagttaacaaaaatttaaaattgcaatagataacactcaaagtatatatatgacaaaa
OVR01_0070_E06.b : gtgc                                                       
SPL01_0050_H11.b :                                                             


20060611C-007736 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 807
OVRM1_0211_B01.b :                                                             
LNG01_0102_H09.b : agtacagaggcaaagtaaatttcgannaanaatcaatagaaaagacacgaatnaattnnn
OVR01_0070_E06.b :                                                             
SPL01_0050_H11.b :                                                             


20060611C-007736 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 807
OVRM1_0211_B01.b :                                                             
LNG01_0102_H09.b : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
OVR01_0070_E06.b :                                                             
SPL01_0050_H11.b :                                                             


20060611C-007736 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 807
OVRM1_0211_B01.b :                                                             
LNG01_0102_H09.b : nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
OVR01_0070_E06.b :                                                             
SPL01_0050_H11.b :                                                             


20060611C-007736 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 807
OVRM1_0211_B01.b :                                                             
LNG01_0102_H09.b : nnnnnnnnnnnnnnnnnnnnnnn                                    
OVR01_0070_E06.b :                                                             
SPL01_0050_H11.b :