[Overview] [RefSeq] [Assembly & SNP] [Alignment]
Assembly Name: 20060611C-007787
Length:
1,114
Sequence:
[FASTA format sequence]
TGGCGCGCTG TGCGGCGCAG GGCGGCTGGC ACAAACGGCG GCGCCGGGGC CGGAGGAAAA
AGCTGGCCAT CGTGACAGTT CTCTTCCCAA GCCCCTAGGG ACATCAGAGG ATTTGGGGAC
CAGCGAGCAC CCCCAGGGCA CGAGAAAAGT TTCTGTCACC TGCCCTGCCT CATCCTGCCC
CACGCCAGGC CCAGCTGCCC TGGCCCCCGG CTGCATCAAG TGGAGGAGGA GGAGGTGGAG
GAGGGTGGCA CCATGGGCCT GGGCCGTGCC CTCCATGCCC GGGGGATGAA GACACTGCTG
CCATGGACAG CCCGTGCCAG CCGCAGCCCC TGAGTCAGGC TCTCCCTCAG TTGCCTGGTT
CCGTGTCAGA ACCGTTGGAG CCTAACCGGG CCAGGATGGG GGTGGAGAGT TACCTGCCCT
GTCCCCTGCT GTCCTCCTAC CACTGTCCAG GAGCGCCTGG TGAGGCCTCG GCGGGAAGTG
GGACCCCCAG AGCCACAGCT ACTTCCACCA CAGCCAGCCC CCTGCGGGAG GGCTTCGGTG
GGCAGGATGG CGGCGAGCTG CGGCCGCTGC AGAGTGAGGG TGCTGCGGCA CTGGTCACCA
AGGGGTGCCA GCGGCTGGCA GCCCAGGGCG CCCGGCCTGA GGCCCCCAAA CGGAAATGGG
CAGAGGGTGG TGGGGATGCC CCCGCACCCA GCAAACGGCC CTGGGCCAGG CAGGAGAACC
AGGAGGCTGA AGCCGAGGGG GAGGGCTGCA GCAGTGGCAG TGGTGAGCCC AGTGCTGGGC
TGAGGGAGGA GGTGCTGCCC GCTGCACCGG AGCGCCTGGC CCTGGACTAT ATTGTGCCCT
GCATGCGGTA CTATGGCATC TGCGTCAAGG ACAGTTTCCT GGGGGCGGCA CTAGGTGGCC
GTGTGCTGGC CGAGGTGGAA GCCCTGAAGC GGGGCGGGCG CCTGCGTGAC GGGCAGCTAG
TGAGCCAGCG GGCTATCCCG CCACGCAGCA TCCGTGGGGA CCAGATTGCC TGGGTGGAAA
GCCATGAGCC CGGCTGCCGA AGCATTGGTG CTCTTATGGC CCACGTGGAT GCTGTAATCC
GCCACTGTGC TGGGAGGCTG GGCAGCTACG TCAT
SNP mapping information
| SNP ID | Rel. | Chr. | Location (cM) |
|---|
| Locus | Definition | Score | E value | FL | ||
|---|---|---|---|---|---|---|
 |
 | EGLN2 | egl nine homolog 2 (C. elegans) | 377 | e-104 | O |
|
| EGLN1 | egl nine homolog 1 (C. elegans) | 119 | 6e-27 | O |
|
| EGLN3 | egl nine homolog 3 (C. elegans) | 97.4 | 2e-20 | O |
| Locus | Definition | Score | E value | FL |
|---|
| Locus | Definition | Score | E value | FL |
|---|
| Locus | Definition | Score | E value | FL |
|---|
| Locus | Definition | Score | E value | FL |
|---|
|
20060611C-007787 : .....................................................TGGCGCG
---------+---------+---------+---------+---------+---------+ 7
THY01_0126_D09.b : ttgtcaaaacagcggtaxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTGGCGCG
ADR01_0028_H12.b : nggcaacaxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTGGCGCG
SKNB1_0049_H10.b : nntttgannnnnnnncctacgttgctcggatgggc
TCH01_0042_G04.b :
20060611C-007787 : CTGTGCGGCGCAGGGCGGCTGGCACAAACGGCGGCGCCGGGGCCGGAGGAAAAAGCTGGC
---------+---------+---------+---------+---------+---------+ 67
THY01_0126_D09.b : CTGTGCGGCGCAGGGCGGCTGGCACAAACGGCGGCGCCGGGGCCGGAGGAAAAAGCTGGC
ADR01_0028_H12.b : CTGTGCGGCGCAGGGCGGCTGGCACAAACGGCGGCGCCGGGGCCGGAGGAAAAAGCTGGC
SKNB1_0049_H10.b : gctnGCGGCGCAG*GCGGCTGGCACAAACGGCGGCGCCGGGGCCGGAGGAAAAAGCTGGC
TCH01_0042_G04.b :
20060611C-007787 : CATCGTGACAGTTCTCTTCCCAAGCCCCTAGGGACATCAGAGGATTTGGGGACCAGCGAG
---------+---------+---------+---------+---------+---------+ 127
THY01_0126_D09.b : CATCGTGACAGTTCTCTTCCCAAGCCCCTAGGGACATCAGAGGATTTGGGGACCAGCGAG
ADR01_0028_H12.b : CATCGTGACAGTTCTCTTCCCAAGCCCCTAGGGACATCAGAGGATTTGGGGACCAGCGAG
SKNB1_0049_H10.b : CATCGTGACAGTTCTCTTCCCAAGCCCCTAGGGACATCAGAGGATTTGGGGGCCAGCGAG
TCH01_0042_G04.b :
20060611C-007787 : CACCCCCAGGGCACGAGAAAAGTTTCTGTCACCTGCCCTGCCTCATCCTGCCCCACGCCA
---------+---------+---------+---------+---------+---------+ 187
THY01_0126_D09.b : CACCCCCAGGGCACGAGAAAAGTTTCTGTCACCTGCCCTGCCTCATCCTGCCCCACGCCA
ADR01_0028_H12.b : CACCCCCAGGGCACGAGAAAAGTTTCTGTCACCTGCCCTGCCTCATCCTGCCCCACGCCA
SKNB1_0049_H10.b : CACCCCCAGGGCACGAGAAAAGTTTCTGTCACCTGCCCTGCCTCATCCTGCCCCACGCCA
TCH01_0042_G04.b : nnnaagcttggactatgacxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
20060611C-007787 : GGCCCAGCTGCCCTGGCCCCCGGCTGCATCAAGTGGAGGAGGAGGAGGTGG*AGGAGGGT
---------+---------+---------+---------+---------+---------+ 246
THY01_0126_D09.b : GGCCCAGCTGCCCTGGCCCCCGGCTGCATCAAGTGGAGGAGGAGGAGGTGG*AGGAGGGT
ADR01_0028_H12.b : GGCCCAGCTGCCCTGGCCCCCGGCTGCATCAAGTGGAGGAGGAGGAGGTGG*AGGAGGGT
SKNB1_0049_H10.b : GGCCCAGCTGCCCTGGCCCCCGGCTGCATCAAGTGGAGGAGGAGGAGGTGGNAGGAGGGT
TCH01_0042_G04.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxtggcgcgctgtgcggcgcagggcggct
20060611C-007787 : GGCACCATGGGCCTGGGCCGTGCCCTCCATGCCCGGGGGATGAAGACACTGCTGCCATGG
---------+---------+---------+---------+---------+---------+ 306
THY01_0126_D09.b : GGCACCATGGGCCTGGGCCGTGCCCTCCATGCCCGGGGGATGAAGACACTGCTGCCATGG
ADR01_0028_H12.b : GGCACCATGGGCCTGGGCCGTGCCCTCCATGCCCGGGGGATGAAGACACTGCTGCCATGG
SKNB1_0049_H10.b : GGCACCATGGGCCTGGGCCGTGCCCTCCATGCCCGGGGGATGAAGACACTGCTGCCATGG
TCH01_0042_G04.b : ggcacaaacggcggcgccggggccggaggaaaaagctggccatcgtgacagttctcttcc
20060611C-007787 : ACAGCCCGTGCCAGCCGCAGCCCCTGAGTCAGGCTCTCCCTCAGTTGCCTGGTTCCGTGT
---------+---------+---------+---------+---------+---------+ 366
THY01_0126_D09.b : ACAGCCCGTGCCAGCCGCAGCCCCTGAGTCAGGCTCTCCCTCAGTTGCCTGGTTCCGTGT
ADR01_0028_H12.b : ACAGCCCGTGCCAGCCGCAGCCCCTGAGTCAGGCTCTCCCTCAGTTGCCTGGTTCCGTGT
SKNB1_0049_H10.b : ACAGCCCGTGCCAGCCGCAGCCCCTGAGTCAGGCTCTCCCTCAGTTGCCTGGTTCCGTGT
TCH01_0042_G04.b : caagcccctagggacatCAGCCCCTGAGTCAGGCTCTCCCTCAGTTGCCTGGTTCCGTGT
20060611C-007787 : CAGAACCGTTGGAGCCTAACCGGGCCAGGATGGGGGTGGAGAGTTACCTGCCCTGTCCCC
---------+---------+---------+---------+---------+---------+ 426
THY01_0126_D09.b : CAGAACCGTTGGAGCCTAACCGGGCCAGGATGGGGGTGGAGAGTTACCTGCCCTGTCCCC
ADR01_0028_H12.b : CAGAACCGTTGGAGCCTAACCGGGCCAGGATGGGGGTGGAGAGTTACCTGCCCTGTCCCC
SKNB1_0049_H10.b : CAGAACCGTTGGAGCCTAACCGGGCCAGGATGGGGGTGGAGAGTTACCTGCCCTGTCCCC
TCH01_0042_G04.b : CAGAACCGTTGGAGCCTAACCGGGCCAGGATGGGGGTGGAGAGTTACCTGCCCTGTCCCC
20060611C-007787 : TGCTGTCCTCCTACCACTGTCCAGGAGCGCCTGGTGAGGCCTCGGCGGGAAGTGGGACCC
---------+---------+---------+---------+---------+---------+ 486
THY01_0126_D09.b : TGCTGTCCTCCTACCACTGTCCAGGAGCGCCTGGTGAGGCCTCGGCGGGAAGTGGGACCC
ADR01_0028_H12.b : TGCTGTCCTCCTACCACTGTCCAGGAGCGCCTGGTGAGGCCTCGGCGGGAAGTGGGACCC
SKNB1_0049_H10.b : TGCTGTCCTCCTACCACTGTCCAGGAGCGCCTGGTGAGGCCTCGGCGGGAAGTGGGACCC
TCH01_0042_G04.b : TGCTGTCCTCCTACCACTGTCCAGGAGCGCCTGGTGAGGCCTCGGCGGGAAGTGGGACCC
20060611C-007787 : CCAGAGCCACAGCTACTTCCACCACAGCCAGCCCCCTGCGGGAGGGCTTCGGTGGGCAGG
---------+---------+---------+---------+---------+---------+ 546
THY01_0126_D09.b : CCAGAGCCACAGCTACTTCCACCACAGCCACCCCCCTGCGGGAAGGCTTCGGTGGGCAGG
ADR01_0028_H12.b : CCAGAGCCACAGCTACTTCCACCACAGCCAGCCCCCTGCGGGAGGGCTTCGGTGGGCAGG
SKNB1_0049_H10.b : CCAGAGCCACAGCTACTTCCACCACAGCCAGCCCCCTGCGGGAGGGCTTCGGTGGGCAGG
TCH01_0042_G04.b : CCAGAGCCACAGCTACTTCCACCACAGCCAGCCCCCTGCGGGAGGGCTTCGGTGGGCAGG
20060611C-007787 : ATGGCGGCGAGCTGCGGCCGCTGCAGAGTGAGGGTGCTGCGGCACTGGTCACCAAGGGGT
---------+---------+---------+---------+---------+---------+ 606
THY01_0126_D09.b : ATGGGGGGCAGCTGCGGCCCCTGCAaattaggttgctgcggccttgttcaccagggtgcg
ADR01_0028_H12.b : ATGGCGGCGAGCTGCGGCCGCTGCAAAGTGANGGTGCTGCGGCACTGGTCACCAAGGGGT
SKNB1_0049_H10.b : ATGGCGGCGAGCTGCGGCCGCTGCAGAGTGAGGGTGCTGCGGCACTGGTCACCAAGGGGT
TCH01_0042_G04.b : ATGGCGGCGAGCTGCGGCCGCTGCAGAGTGAGGGTGCTGCGGCACTGGTCACCAAGGGGT
20060611C-007787 : GCCAGCGGCTGGCAGCCCAGGGCGCCCGGCCTGAGGCCCCCAAACGGAAATGGGCAGAGG
---------+---------+---------+---------+---------+---------+ 666
THY01_0126_D09.b : gccgttggcg
ADR01_0028_H12.b : GCCAGCGGCTGGCAGCCCNAGGCGCCCGGCCTGANGCCCCCCAACGGAAATGGGCAAANG
SKNB1_0049_H10.b : GCCAGCGGCTGGCAGCCCAGGGCGCCCGGCCTGAGGCCCCCAAACGGAA*TGGGCAAGGG
TCH01_0042_G04.b : GCCAGCGGCTGGCAGCCCAGGGCGCCCGGCCTGAGGCCCCCAAACGGAAATGGGCAGAGG
20060611C-007787 : GTGGT*GGGGATGCCCCCGCACCCAGCAAACGGCCCTGGGCCAGGCAGGAGAACCAGGAG
---------+---------+---------+---------+---------+---------+ 725
THY01_0126_D09.b :
ADR01_0028_H12.b : GTGGT*GGGGATGCCCCCGCACCCAGCAAACGGCCCTGGGGCAGGCAGGAAAACCACGAA
SKNB1_0049_H10.b : GTGGTTGGGGATGCCCCCGCACCCAGCAAACGGCCCTGGGCCAGGCAGGAGAACCAGGAG
TCH01_0042_G04.b : GTGGT*GGGGATGCCCCCGCACCCAGCAAACGGCCCTGGGCCAGGCAGGAGAACCAGGAG
20060611C-007787 : GCTGAAGCCGAGGGGGAGGGCTGCAGCAGTGGCAGTGGTGAGCCCAGTGC*TGGGCTGAG
---------+---------+---------+---------+---------+---------+ 784
THY01_0126_D09.b :
ADR01_0028_H12.b : GCTGAAGGCGAGGGGGAGGGCTGCANCATTGGCANTGGTGGAGCCAATGCCTGGGCTGAA
SKNB1_0049_H10.b : GCTGAAGCCGAGGGGGAGGGCTGCAGCAGTGGCAGTGGTGAGCCCAGTGC*TGGGCTGAG
TCH01_0042_G04.b : GCTGAGGCCGAGGGGGAGGGCTGCAGCAGTGGCAGTGGTGAGCCCAGTGC*TGGGCTGAG
20060611C-007787 : GGAGGAGGTGCTGCCCGCTGCACCGGAGCGCCTGGCCCTGGACTATATTGTGCCCTGCAT
---------+---------+---------+---------+---------+---------+ 844
THY01_0126_D09.b :
ADR01_0028_H12.b : GGAAGAAGTGCTGCCCccttgcaccgaacgcccgggccctggaataaattggggcccgca
SKNB1_0049_H10.b : GGAGGAAGTGCTGCCCGCTGCACCGGAGCGCCTGGCCCTGAACTATATTGTGCCCTGCAT
TCH01_0042_G04.b : GGAGGAGGTGCTGCCCGCTGCACCGGAGCGCCTGGCCCTGGACTATATTGTGCCCTGCAT
20060611C-007787 : GCGGTACTATGGCATCTGCGTCAAGGACAGTTTCCTGGGGGCGGCACTAGGTGGCCGTGT
---------+---------+---------+---------+---------+---------+ 904
THY01_0126_D09.b :
ADR01_0028_H12.b : aggcggaacaatggcatctgccttcaaggaaagttttcctggggggcgcacctaaggggg
SKNB1_0049_H10.b : GCGGTACTATGGCATCTGCGTCCAAGACAGTTTCCTGGGGGCGGCACTAAGTGGCCCTGT
TCH01_0042_G04.b : GCGGTACTATGGCATCTGCGTCAAGGACAGTTTCCTGGGGGCGGCACTAGGTGGCCGTGT
20060611C-007787 : GCTGGCCGAGGTGGAAGCCCTGAAGCGGGGCGGGCGCCTGCGTGACGGGCAGCTAGTGAG
---------+---------+---------+---------+---------+---------+ 964
THY01_0126_D09.b :
ADR01_0028_H12.b : ccttgggcttgcccaaatgggaaggcccttaaaacggggggggcgccctgcctgaaaggc
SKNB1_0049_H10.b : GCTGCCCAAGTTGGAAGCCCTGAANCGGGGCCGGCGCCTGCCTGACGGGCACCTAATGAA
TCH01_0042_G04.b : GCTGGCCGAGGTGGAGGCCCTGAAGCGGGGCGGGCGCCTGCGTGACGGGCAGCTAGTGAG
20060611C-007787 : CCAGCGGGCTATCCCGCCACGCAGCATCCGTGGGGACCAGATTGCCTGGGTGGAAAGCCA
---------+---------+---------+---------+---------+---------+ 1024
THY01_0126_D09.b :
ADR01_0028_H12.b : aaacttatgggcccacagggggttatccccccccccaaccatcctggggggaacaaaatt
SKNB1_0049_H10.b : CCAGCGGGCTATCCCGCCACGCACCATCCtggggaaccaaatgccctggttgaaaggcct
TCH01_0042_G04.b : CCAGCGGGCTATCCCGCCACGCAGCATCCGTGGGGACCAGATTGCCTGGGTGGAAAGCCA
20060611C-007787 : TGAGCCCGGCTGCCGAAGCATTGGTGCTCTTATGGCCCACGTGGATGCTGTAATCCGCCA
---------+---------+---------+---------+---------+---------+ 1084
THY01_0126_D09.b :
ADR01_0028_H12.b : gtccgggtgggaaaggcattaaccccggtgccccaaaaattgttggctcctttagggccc
SKNB1_0049_H10.b : taaccccgcttccaaaacatttgtcccctaaaggcccacgtgaaagctgaaacccccact
TCH01_0042_G04.b : TGAGCCCGGCTGCCGAAGCATTGGTGCTCTTATGGCCCACGTGGATGCTGTAATCCGCCA
20060611C-007787 : CTGTGCTGGGAGGCTGGGCAGCTACGTCAT..............................
---------+---------+---------+---------+---------+---------+ 1114
THY01_0126_D09.b :
ADR01_0028_H12.b : ccgggggagggtggtaaaccccccacgggggctgggggggcgggggggaatcactttttt
SKNB1_0049_H10.b : tgtcctggaaa
TCH01_0042_G04.b : CTGTGCTGGGAGGCTGGGCAGCTACGTCATccaagggcgcacccaagccatggtggcatg
20060611C-007787 : ............................................................
---------+---------+---------+---------+---------+---------+ 1114
THY01_0126_D09.b :
ADR01_0028_H12.b : ttaaggggggcgacccaagggccgtggggggggtgtttaaccccacacaaggggtggggg
SKNB1_0049_H10.b :
TCH01_0042_G04.b : ttacccagcaacgggctggggtacgtgagacacgttgacatccccacggcgatgggcgct
20060611C-007787 : ............................................................
---------+---------+---------+---------+---------+---------+ 1114
THY01_0126_D09.b :
ADR01_0028_H12.b : ggaaatgtgaaacaattttaaaaatccccctccggcagaaggggccgcgctcccccctcg
SKNB1_0049_H10.b :
TCH01_0042_G04.b : gctcaccgtatctatacctgaatcaaactgggactcagggtcatggcggcctgctgcaaa
20060611C-007787 : ............................................................
---------+---------+---------+---------+---------+---------+ 1114
THY01_0126_D09.b :
ADR01_0028_H12.b : tttctattatttctgaatcaacatagtgggcacacccggggtgtgagggggcgcctcgtc
SKNB1_0049_H10.b :
TCH01_0042_G04.b : attcccaaaggccggctggggtagcaacatcgagccatctttaacggttggtatttcttg
20060611C-007787 : ............................................................
---------+---------+---------+---------+---------+---------+ 1114
THY01_0126_D09.b :
ADR01_0028_H12.b : tcaaaaaaatcctccagagggcgcgctgtg
SKNB1_0049_H10.b :
TCH01_0042_G04.b : ttcgatggcgaaccccagtagggaaacagcctttccccggtatgcctcctgtttggtttt
20060611C-007787 : ............................................................
---------+---------+---------+---------+---------+---------+ 1114
THY01_0126_D09.b :
ADR01_0028_H12.b :
SKNB1_0049_H10.b :
TCH01_0042_G04.b : tgcccct
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