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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20060611C-008176

Length: 1,543

Sequence:  [FASTA format sequence]
TGATCAAGCG AGAGTGGCCA CAGCACTGGC CACACATGCT AGGTAGAATT GGACACTCTT
TCACGACAAG GGGAAACACA GACAGAATTA GTGATGTTCA TCCTTTTGCG ACTAGCAGAG
GACGTCGTGA CCTTTCAGAC CTTGCCCCCT CAAAGAAGAA GGGATATCCA GCAAACATTA
ACCCAGAACA TGGAAAAAAT CTTCAGTTTT CTACTTAACA CTCTTCAAGA AAATGTAAAC
AAGTACCAAC AAGTGAAAAC AGATAATGCT CAGGAGTCGA AGGCCCAAGC ATACTGTCGA
GTAGCAATTG CAGCACTGAA TACACTAGCA GGCTACACTG ACTGGGTATC CCTGAGCCAC
ATTACTGCTG AAAACTGTAA ACTCCTAGAG ATGCTGTGCC TGCTTCTGAG TGAACAGGAA
CTTCAATTGG GAGCAGCTGA GTGTCTTCTC ATTGCAGTCA GCAGAAAGGG CAAGTTGGAA
GATCGGAAAC CCTTGATGAT CTTGTTTGGA GATGCTGTCA TGCATTATAT GCTCTCCGCT
GCACAGACTG CTGACGGAGG AGGCTTGGTA GAAAAACACT ACGTTTTCCT GAAGAGACTT
TGTCAGGTGT TGTGTGCTCT GGGCAGTCAG CTGTGTGCAT TGCTGGGTCC AGATTCTGAT
GTAGAAACAC CAGCAAACTT TGGAAAATAC CTGGAATCTT TTCTTGCTTT CACAACGCAT
CCAAGTCAGT TTTTACGCTC TTCAACTCAG ATGACTTGGG GAGCCCTCTT CCGGCATGAG
GTCCTATCCC GTGACCCTTT GCTATTAGCA ATAATACCAA AATATCTTCG TGCTTGTATG
ACTAACTTGG TCAAGATGGG TTTTCCTTCT AAAACCGACA ACCCCAGCTG TGAATACTCT
CGATTAGATT TTGATAGCGA TGAGGACTTC AATGCTTTCT TCAACTCCTC TCGGGCTCAA
CAGGGAGAGG TAATGAGGTT AGCATGTCGT TTGGATCCCA AGACTAGCTT CCAGATGGCT
GGGGAGTGGC TGAAGTATCA GCTCTCAGCT GCTATTGACA CTGGGTCCAT GAAGTCTGGA
AGTGGAGAAA GCGGCCTCTG CTCCATCTTC TCACCTTCGT TTGTGCAGTG GGAAGCCATG
ACTTTCTTTG TGGAAGGTGT GGTCAACCGG ATGTTTCGAA CAGTAGATAA GGAAGAAATT
CCTGTCAATG ATGGAATAGA GCTACTGCAG ATGGTCCTGA ACTTTGAGAC CAAGGATCCC
CTCATCCTGT CCTGTGTCCT CACTAATGTC TCAGCACTCT TTTCATTTGT CACCTTCAGA
CCAGAGTTCC TGCCCCAGGT CTTCTCTAAG CTATTTTCAT CTGTCACTTT TGAAATTGTT
GAAGAAAGTA AGGCTCCCAG GACCCGGGCA GTGAGGAATG TGAGGCGACA TGCTTGTTCC
TCCATCATCA AGATGTGTCG TGACTACCCC CAGCTTGTGC TGCCCAATTT TGACATGCTG
TATGACCACG TGAAGCAGCT CCTCTCCNAT GAGCTGCTCC TGA

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

---

Assembly Overview:      TOP

Change score limit to  

---

BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		XPO5	exportin 5	877	0.0

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL

Alignment:      TOP

20060611C-008176 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
THY01_0022_F10.b : ttaacaaaxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
OVRM1_0016_G11.b :                                                             
ADR01_0006_A11.b :                                                             


20060611C-008176 : ............TGATCAAGCGAGAGTGGCCACAGCACTGGCCACACATGCTAGGTAGAA
                   ---------+---------+---------+---------+---------+---------+ 48
THY01_0022_F10.b : xxxxxxxxxxxxTGATCAAGCGAGAGTGGCCACAGCACTGGCCACACATGCTAGGTAGAA
OVRM1_0016_G11.b :                                                    cxxxxxxxx
ADR01_0006_A11.b :                                                             


20060611C-008176 : TTGGACACTCTTTCACGACAAGGGGAAACACAGACAGAATTAGTGATGTTCATCCTTTTG
                   ---------+---------+---------+---------+---------+---------+ 108
THY01_0022_F10.b : TTGGACACTCTTTCACGACAAGGGGAAACACAGACAGAATTAGTGATGTTCATCCTTTTG
OVRM1_0016_G11.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTTTTG
ADR01_0006_A11.b :                                                             


20060611C-008176 : CGACTAGCAGAGGACGTCGTGACCTTTCAGACCTTGCCCCCTCAAAGAAGAAGGGATATC
                   ---------+---------+---------+---------+---------+---------+ 168
THY01_0022_F10.b : CGACTAGCATAGGACGTCGTGACCTTTCATACCTTGCCCCCTCAAAGAAGAAGGGATATC
OVRM1_0016_G11.b : CGACTAGCAGAGGACGTCGTGACCTTTCAGACCTTGCCCCCTCAAAGAAGAAGGGATATC
ADR01_0006_A11.b :                                                             


20060611C-008176 : CAGCAAACATTAACCCAGAACATGGAAAAAATCTTCAGTTTTCTA*CTTAACACTCTTCA
                   ---------+---------+---------+---------+---------+---------+ 227
THY01_0022_F10.b : CTGCAAACATTAACCCATAACATGGAAAAAATCTTCAGTTTTCTAGCTTAACACTCTTCA
OVRM1_0016_G11.b : CAGCAAACATTAACCCAGAACATGGAAAAAATCTTCAGTTTTCTA*CTTAACACTCTTCA
ADR01_0006_A11.b :                                                             


20060611C-008176 : AGAAAATGTAAACAAGTACCAACAAGTGAAAACA*GATAATGCTCAGGAGTCGAAGGCCC
                   ---------+---------+---------+---------+---------+---------+ 286
THY01_0022_F10.b : AGAAAATGTAAACAAGTACCAACAAGTGAAAACATGATAATGCTCAGGAGTCGAAGGCCC
OVRM1_0016_G11.b : AGAAAATGTAAACAAGTACCAACAAGTGAAAACA*GATAATGCTCAGGAGTCGAAGGCCC
ADR01_0006_A11.b :                                                             


20060611C-008176 : AAGCATACTGTCGAGTAGCAATTGCAGCACTGAATACACTAGCAGGCTACACTGACTGGG
                   ---------+---------+---------+---------+---------+---------+ 346
THY01_0022_F10.b : AAGCATACTGTCGAGTATCAATTGCAGCACTGAATACACTAGCAGGCTACACTGACTGGG
OVRM1_0016_G11.b : AAGCATACTGTCGAGTAGCAATTGCAGCACTGAATACACTAGCAGGCTACACTGACTGGG
ADR01_0006_A11.b :                                                             


20060611C-008176 : TATCCCTGAGCCACATTACTGCTGAAAACTGTAAACTCCTAGAGATGCTGTGCCTGCTTC
                   ---------+---------+---------+---------+---------+---------+ 406
THY01_0022_F10.b : GATCCCTGAGCCACATTACTGCTGAAAACTGTAAACTCCTACAGATGCTGTGCCTGCTTC
OVRM1_0016_G11.b : TATCCCTGAGCCACATTACTGCTGAAAACTGTAAACTCCTAGAGATGCTGTGCCTGCTTC
ADR01_0006_A11.b :                                                             


20060611C-008176 : TGAGTGAACAGGAACTTCAATTGGGAGCAGCTGAGTGTCTTCTCATTGCAGTCAGCAGAA
                   ---------+---------+---------+---------+---------+---------+ 466
THY01_0022_F10.b : TGAGTGAACAAGAACTTCAATTGGGAGCAGCTGAGTGTCTTCTCATTGCAGTCAGCAGAA
OVRM1_0016_G11.b : TGAGTGAACAGGAACTTCAATTGGGAGCAGCTGAGTGTCTTCTCATTGCAGTCAGCAGAA
ADR01_0006_A11.b :                                                             


20060611C-008176 : AGGGCAAGT*TGGAAGATCGGAAACCCTTGATGATCTTGTTTGGAGATGCTGTCATGCAT
                   ---------+---------+---------+---------+---------+---------+ 525
THY01_0022_F10.b : AGGGCAAGTCTGGAAGATCGGAAACCCTTGATGATCTTGGTTGGAGATGCTGTCATGCAT
OVRM1_0016_G11.b : AGGGCAAGT*TGGAAGATCGGAAACCCTTGATGATCTTGTTTGGAGATGCTGTCATGCAT
ADR01_0006_A11.b :                                                             


20060611C-008176 : TATATGCTCTCCGCTGCACAGACTGCTGACGGAGGAGGCTTGGTAGAAAAACACTACGTT
                   ---------+---------+---------+---------+---------+---------+ 585
THY01_0022_F10.b : TATATGCTCTCCGCTGCACAGACTGCTGACGGAGGAGGCTTGGTAGAAAAACACTACGTC
OVRM1_0016_G11.b : TATATGCTCTCCGCTGCACAGACTGCTGACGGAGGAGGCTTGGTAGAAAAACACTACGTT
ADR01_0006_A11.b :                                                             


20060611C-008176 : TTCCTGAAGAGACTTTGTCAGGTGTTGTGTGCTCTGGGCAGTCAGCTGTGTGCATTGCTG
                   ---------+---------+---------+---------+---------+---------+ 645
THY01_0022_F10.b : TTCCTGAAGAGACTTTGACATGTGTTGTGTGCTCTGGGCAGTCAGCTGTGTGCATTGCTG
OVRM1_0016_G11.b : TTCCTGAAGAGACTTTGTCAGGTGTTGTGTGCTCTGGGCAGTCAGCTGTGTGCATTGCTG
ADR01_0006_A11.b :                                                       nnnntt


20060611C-008176 : GGTCCAGATTCTGATGTAGAAACACCAGCAAACTTTGGAAAATACCTGGAATCTTTTCTT
                   ---------+---------+---------+---------+---------+---------+ 705
THY01_0022_F10.b : GGGCCAGATTCTGATGTAGAAACACCAGCAAACTTTGGAAAATACCTGGAATCTTTTCTT
OVRM1_0016_G11.b : GGTCCAGATTCTGATGTAGAAACACCAGCAAACTTTGGAAAATACCTGGAATCTTTTCTT
ADR01_0006_A11.b : actaacaxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxgCTTTTCTT


20060611C-008176 : GCTTTCACAACGCATCCAAGTCAGTTTTTACGCTCTTCAACTCAGATGACTTGGGGAGCC
                   ---------+---------+---------+---------+---------+---------+ 765
THY01_0022_F10.b : GCTTTCACAACGCATCCAAGACAGTTGTTACGCTCTTCAACTCAGATGACTTGGGGAGCC
OVRM1_0016_G11.b : GCTTTCACAACGCATCCAAGTCACGTTTTACGCTCTTTCACTCAGATGACTTGGGGAGCC
ADR01_0006_A11.b : GCTTTCACAACGCATCCAAGTCAGTTTTTACGCTCTTCAACTCAGATGACTTGGGGAGCC


20060611C-008176 : CTCTTCCGGCATGAGGTCCTATCCCGTGACCCTTTGCTATTAGCAATAATACCAAAATAT
                   ---------+---------+---------+---------+---------+---------+ 825
THY01_0022_F10.b : CTCTTCCGGCATGAGGTCCCATCCCGTGACCCTTTTCTATTATCAATAATACCCAAATAT
OVRM1_0016_G11.b : CTCTTCCGGCATGAGGTCCTATCCCGTGACCCTTTGCTATTAGCAATAATACCAGAATAT
ADR01_0006_A11.b : CTCTTCCGGCATGAGGTCCTATCCCGTGACCCTTTGCTATTAGCAATAATACCAAAATAT


20060611C-008176 : CTTCGTGCTTGTATGACTAACTTGGTCAAGATGGGTTTTCCTTCTAAAACCGACAACCCC
                   ---------+---------+---------+---------+---------+---------+ 885
THY01_0022_F10.b : CTTCCTGCTTGTATGACTTAACTGGTCAAGATGGGTTTTCCTTTCTAGACCGAC*Aaccc
OVRM1_0016_G11.b : CTTCGTGCTTGTATGACTAACTTGGTCAAGATGGGTTTTCCTT*CTAAACCGAC*ACCCC
ADR01_0006_A11.b : CTTCGTGCTTGTATGACTAACTTGGTCAAGATGGGTTTTCCTTCTAAAACCGACAACCCC


20060611C-008176 : AGCTGTGAATACTCTCGATTAGATTTTGATAGCGATGAGGACTTCAATGCTTTCTTCAAC
                   ---------+---------+---------+---------+---------+---------+ 945
THY01_0022_F10.b : cgcctgtgaatagtctcgattaaatttttgatagccatgaggactttcatggctttcttg
OVRM1_0016_G11.b : AGCTGTG*ATACTCTCGATagat                                    
ADR01_0006_A11.b : AGCTGTGAATACTCTCGATTAGATTTTGATAGCGATGAGGACTTCAATGCTTTCTTCAAC


20060611C-008176 : TCCTCTCGGGCTCAACAGGGAGAGGTAATGAGGTTAGCATGTCGTTTGGATCCCAAGACT
                   ---------+---------+---------+---------+---------+---------+ 1005
THY01_0022_F10.b : aactcctcttcgggcttcaaaagggaaaaggtagtgaaggttaccatgttcgcttgggat
OVRM1_0016_G11.b :                                                             
ADR01_0006_A11.b : TCCTCTCGGGCTCAACAGGGAGAGGTAATGAGGTTAGCATGTCGTTTGGATCCCAAGACT


20060611C-008176 : AGCTTCCAGATGGCTGGGGAGTGGCTGAAGTATCAGCTCTCAGCTGCTATTGACACTGGG
                   ---------+---------+---------+---------+---------+---------+ 1065
THY01_0022_F10.b : tcccaagaactaactttcccaaagggcttggggaggggggtttgaaattttcacctttct
OVRM1_0016_G11.b :                                                             
ADR01_0006_A11.b : AGCTTCCAGATGGCTGGGGAGTGGCTGAAGTATCAGCTCTCAGCTGCTATTGACACTGGG


20060611C-008176 : TCCATGAAGTCTGGAAGTGGAGAAAGCGGCCTCTGCTCCATCTTCTCACCTTCGTTTGTG
                   ---------+---------+---------+---------+---------+---------+ 1125
THY01_0022_F10.b : caccttgctaatttgaacccttgggggcccgtttgaaaatttttgaaaaagggggaaaaa
OVRM1_0016_G11.b :                                                             
ADR01_0006_A11.b : TCCATGAAGTCTGGAAGTGGAGAAAGCGGCCTCTGCTCCATCTTCTCACCTTCGTTTGTG


20060611C-008176 : CAGTGGGAAGCCATGACTTTCTTTGTGGAAGGTGTGGTCAACCGGATGTTTCGAACAGTA
                   ---------+---------+---------+---------+---------+---------+ 1185
THY01_0022_F10.b : aaggggggggcctccttggatccccatttttttcttcccccctttctg           
OVRM1_0016_G11.b :                                                             
ADR01_0006_A11.b : CAGTGGGAAGCCATGACTTTCTTTGTGGAAGGTGTGGTCAACCGGATGTTTCGAACAGTA


20060611C-008176 : GATAAGGAAGAAATTCCTGTCAATGATGGAATAGAGCTACTGCAGATGGTCCTGAACTTT
                   ---------+---------+---------+---------+---------+---------+ 1245
THY01_0022_F10.b :                                                             
OVRM1_0016_G11.b :                                                             
ADR01_0006_A11.b : GATAAGGAAGAAATTCCTGTCAATGATGGAATAGAGCTACTGCAGATGGTCCTGAACTTT


20060611C-008176 : GAGACCAAGGATCCCCTCATCCTGTCCTGTGTCCTCACTAATGTCTCAGCACTCTTTTCA
                   ---------+---------+---------+---------+---------+---------+ 1305
THY01_0022_F10.b :                                                             
OVRM1_0016_G11.b :                                                             
ADR01_0006_A11.b : GAGACCAAGGATCCCCTCATCCTGTCCTGTGTCCTCACTAATGTCTCAGCACTCTTTTCA


20060611C-008176 : TTTGTCACCTTCAGACCAGAGTTCCTGCCCCAGGTCTTCTCTAAGCTATTTTCATCTGTC
                   ---------+---------+---------+---------+---------+---------+ 1365
THY01_0022_F10.b :                                                             
OVRM1_0016_G11.b :                                                             
ADR01_0006_A11.b : TTTGTCACCTTCAGACCAGAGTTCCTGCCCCAGGTCTTCTCTAAGCTATTTTCATCTGTC


20060611C-008176 : ACTTTTGAAATTGTTGAAGAAAGTAAGGCTCCCAGGACCCGGGCAGTGAGGAATGTGAGG
                   ---------+---------+---------+---------+---------+---------+ 1425
THY01_0022_F10.b :                                                             
OVRM1_0016_G11.b :                                                             
ADR01_0006_A11.b : ACTTTTGAAATTGTTGAAGAAAGTAAGGCTCCCAGGACCCGGGCAGTGAGGAATGTGAGG


20060611C-008176 : CGACATGCTTGTTCCTCCATCATCAAGATGTGTCGTGACTACCCCCAGCTTGTGCTGCCC
                   ---------+---------+---------+---------+---------+---------+ 1485
THY01_0022_F10.b :                                                             
OVRM1_0016_G11.b :                                                             
ADR01_0006_A11.b : CGACATGCTTGTTCCTCCATCATCAAGATGTGTCGTGACTACCCCCAGCTTGTGCTGCCC


20060611C-008176 : AATTTTGACATGCTGTATGACCACGTGAAGCAGCTCCTCTCCNATGAGCTGCTCCTGA..
                   ---------+---------+---------+---------+---------+---------+ 1543
THY01_0022_F10.b :                                                             
OVRM1_0016_G11.b :                                                             
ADR01_0006_A11.b : AATTTTGACATGCTGTATGACCACGTGAAGCAGCTCCTCTCCNATGAGCTGCTCCTGAcg


20060611C-008176 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1543
THY01_0022_F10.b :                                                             
OVRM1_0016_G11.b :                                                             
ADR01_0006_A11.b : cagatggagaagtgtgccctcatggaagccctggttctcatcaacaaccatttcaagact


20060611C-008176 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1543
THY01_0022_F10.b :                                                             
OVRM1_0016_G11.b :                                                             
ADR01_0006_A11.b : atgagcgtcaaaaagtggtcatagaagagctgatggcacccgtggcagcatctggctttc


20060611C-008176 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1543
THY01_0022_F10.b :                                                             
OVRM1_0016_G11.b :                                                             
ADR01_0006_A11.b : tgagagatgcacagagcactgtccgatgctgatgctttcttgcctttgtgggtgcagatc


20060611C-008176 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1543
THY01_0022_F10.b :                                                             
OVRM1_0016_G11.b :                                                             
ADR01_0006_A11.b : agaaagctatgaccggtccaggaggatcctgtgccttaaccaacacgaataacctttggg


20060611C-008176 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1543
THY01_0022_F10.b :                                                             
OVRM1_0016_G11.b :                                                             
ADR01_0006_A11.b : gtatacattttgggttttgaaacaacttccggcccccgatttaaaagccaaactggggaa


20060611C-008176 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1543
THY01_0022_F10.b :                                                             
OVRM1_0016_G11.b :                                                             
ADR01_0006_A11.b : tttggttgttaaccccctgaaatcaacttcaaaccctgcaaaaagggtttaaaattgaaa


20060611C-008176 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1543
THY01_0022_F10.b :                                                             
OVRM1_0016_G11.b :                                                             
ADR01_0006_A11.b : ttgtttcccttaaaacacattttttttcccaaagttccaaaagaaacttcccggttgttt


20060611C-008176 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1543
THY01_0022_F10.b :                                                             
OVRM1_0016_G11.b :                                                             
ADR01_0006_A11.b : atgggcaaaatcatttgatcccccccggaaagaacctctaaaaat