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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20060611C-008781

Length: 911

Sequence:  [FASTA format sequence]
GCAGCGTCAT GGCGCGCTTC TTCCGCGCGG GCCCGGGCTT ACCCTTCCGA GAGGTGCTCT
CGCGGGCAGT GTGGGGTCGT GCCGACAATG GCGGCCTCAG CCCGAAGGTC GGAACCGGAG
ACGCAGGGTC CCTTACAAAG CGTGAGCCGT TCCTCTCCAA GAGTGAGTGG CAAAAGAAGC
TGACTCCAGA GCAATTCCAC GTCACGAGAG AAAAAGGGAC AGAACCGCCT TTCAGTGGGA
CCTACCTGAA TAACAAGGAA GCAGGAATGT ATCACTGTGT GTGCTGTGAC AGCCCACTCT
TCAGCTCTGA GAAAAAGTAC TGCTCTGGCA CTGGATGGCC TTCATTTTCT GAGGCTCACG
GCACATCTGG CTCTGATGAG AGTGACACAG GGATCCTGAG ACGTGTGGAC ACCTCGCTGG
GAACAGCTCG CACGGAGGTT GTCTGCAAGC AGTGCGAAGC TCACCTTGGC CATGTGTTTC
CTGATGGACC TGGGCCTACA GGTCAGAGGT TTTGCATCAA CAGTGTGGCA CTCAAGTTCA
AACCAAGGAA ACACTGACCA TCGCCAGGAG TCCCTTTCTC TTCCACCCTC TCATTTCCAA
ACTCGATTTT CATAATTTAT GCAAATGACT AGTTTTATTA ATGACCAAAC TAGGCTAAGC
TTGCTGGCAT ACCTTCTCTA ATTCATTACC TGGAGTCAGC TCCACCCTGG CTCTGGCTCT
GGCTAGAATT TCACGGAATG ACAGAGGGGC AGTCCTTTCC CTTAATCAAC ATCTGTGGGC
TTTGCCAGGA CCAGAGGGCA TGACTCTTTG GGGACATTAG GAGGCTGATG GATAAGCCAA
AGAACTCCTA TAAAACTATG CTGAATTTTC CATTGCAGTC AAGTGGTTCA CAGACATGTA
TAGGTGAGAG G

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)
SNPW01687	0.9b	10	33.4
SNPW01687	0.91b	10	33.4

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
			methionine sulfoxide reductase B2	294	8e-80
			methionine sulfoxide reductase B3	144	8e-35	O
			methionine sulfoxide reductase B3	142	3e-34	O
			selenoprotein X, 1	51.6	9e-07	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL

Alignment:      TOP

20060611C-008781 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
OVR01_0027_F12.b : ggggcxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
TCH01_0043_A11.b :        tttttggctagtgacttnacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx


20060611C-008781 : .............................GCAGCGTCATGGCGCGCTTCTTCCGCGCGGG
                   ---------+---------+---------+---------+---------+---------+ 31
OVR01_0027_F12.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxGCAGCGTCATGGCGCGCTTCTTCCGCGCGGG
TCH01_0043_A11.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxGCAGCGTCATGGCGCGCTTCTTCCGCGCGGG


20060611C-008781 : CCCGGGCTTACCCTTCCGAGAGGTGCTCTCGCGGGCAGTGTGGGGTCGTGCCGACAATGG
                   ---------+---------+---------+---------+---------+---------+ 91
OVR01_0027_F12.b : CCCGGGCTTACCCTTCCGAGAGGTGCTCTCGCGGGCAGTGTGGGGTCGTGCCGACAATGG
TCH01_0043_A11.b : CCCGGGCTTACCCTTCCGAGAGGTGCTCTCGCGGGCAGTGTGGGGTCGTGCCGACAATGG


20060611C-008781 : CGGCCTCAGCCCGAAGGTCGGAACCGGAGACGCAGGGTCCCTTACAAAGCGTGAGCCGTT
                   ---------+---------+---------+---------+---------+---------+ 151
OVR01_0027_F12.b : CGGCCTCAGCCCGAAGGTCGGAACCGGAGACGCAGGGTCCCTTACAAAGCGTGAGCCGTT
TCH01_0043_A11.b : CGGCCTCAGCCCGAAGGTCGGAACCGGAGACGCAGGGTCCCTTACAAAGCGTGAGCCGTT


20060611C-008781 : CCTCTCCAAGAGTGAGTGGCAAAAGAAGCTGACTCCAGAGCAATTCCACGTCACGAGAGA
                   ---------+---------+---------+---------+---------+---------+ 211
OVR01_0027_F12.b : CCTCTCCAAGAGTGAGTGGCAAAAGAAGCTGACTCCAGAGCGATTCCACGTCACGAGAGA
TCH01_0043_A11.b : CCTCTCCAAGAGTGAGTGGCAAAAGAAGCTGACTCCAGAGCAATTCCACGTCACGAGAGA


20060611C-008781 : AAAAGGGACAGAACCGCCTTTCAGTGGGACCTACCTGAATAACAAGGAAGCAGGAATGTA
                   ---------+---------+---------+---------+---------+---------+ 271
OVR01_0027_F12.b : AAAAGGGACAGAACCGCCTTTCAGTGGGACCTACCTGAATAACAAGGAAGCAGGAATGTA
TCH01_0043_A11.b : AAAAGGGACAGAACCGCCTTTCAGTGGGACCTACCTGAATAACAAGGAAGCAGGAATGTA


20060611C-008781 : TCACTGTGTGTGCTGTGACAGCCCACTCTTCAGCTCTGAGAAAAAGTACTGCTCTGGCAC
                   ---------+---------+---------+---------+---------+---------+ 331
OVR01_0027_F12.b : TCACTGTGTGTGCTGTGACAGCCCACTCTTCAGCTCTGAGAAAAAGTACTGCTCTGGCAC
TCH01_0043_A11.b : TCACTGTGTGTGCTGTGACAGCCCACTCTTCAGCTCTGAGAAAAAGTACTGCTCTGGCAC


20060611C-008781 : TGGATGGCCTTCATTTTCTGAGGCTCACGGCACATCTGGCTCTGATGAGAGTGACACAGG
                   ---------+---------+---------+---------+---------+---------+ 391
OVR01_0027_F12.b : TGGATGGCCTTCATTTTCTGAGGCTCACGGCACATCTGGCTCTGATGAGAGTGACACAGG
TCH01_0043_A11.b : TGGATGGCCTTCATTTTCTGAGGCTCACGGCACATCTGGCTCTGATGAGAGTGACACAGG


20060611C-008781 : GATCCTGAGACGTGTGGACACCTCGCTGGGAACAGCTCGCACGGAGGTTGTCTGCAAGCA
                   ---------+---------+---------+---------+---------+---------+ 451
OVR01_0027_F12.b : GATCCTGAGACGTGTGGACACCTCGCTGGGAACAGCTCGCACGGAGGTTGTCTGCAAGCA
TCH01_0043_A11.b : GATCCTGAGACGTGTGGACACCTCGCTGGGAACAGCTCGCACGGAGGTTGTCTGCAAGCA


20060611C-008781 : GTGCGAAGCTCACCTTGGCCATGTGTTTCCTGATGGACCTGGGCCTACAGGTCAGAGGTT
                   ---------+---------+---------+---------+---------+---------+ 511
OVR01_0027_F12.b : GTGCGAAGCTCACCTTGGCCATGTGTTTCCTGATGGACCTGGGCCTACAGGTCAGAGGTT
TCH01_0043_A11.b : GTGCGAAGCTCACCTTGGCCATGTGTTTCCTGATGGACCTGGGCCTACAGGTCAGAGGTT


20060611C-008781 : TTGCATCAACAGTGTGGCACTCAAGTTCAAACCAAGGAAACACTGACCATCGCCAGGAGT
                   ---------+---------+---------+---------+---------+---------+ 571
OVR01_0027_F12.b : TTGCATCAACAGTGTGGCACTCAAGTTCAAACCAAGGAAACACTGACCATCGCCAGGAGT
TCH01_0043_A11.b : TTGCATCAACAGTGTGGCACTCAAGTTCAAACCAAGGAAACACTGACCATCGCCAGGAGT


20060611C-008781 : CCCTTTCTCTTCCACCCTCTCATTTCCAAACTCGATTTTCATAATTTATGCAAATGACTA
                   ---------+---------+---------+---------+---------+---------+ 631
OVR01_0027_F12.b : CCCTTTCTCTTCCACCCTCTCATTTCCAAACTCGATTTTCATAATTTATGCAAATGACTA
TCH01_0043_A11.b : CCCTTTCTCTTCCACCCTCTCATTTCCAAACTCGATTTTCATAATTTATGCAAATGACTA


20060611C-008781 : GTTTTATTAATGACCAAACTAGGCTAAGCTTGCTGGCATACCTTCTCTAATTCATTACCT
                   ---------+---------+---------+---------+---------+---------+ 691
OVR01_0027_F12.b : GTTTTATTAATGACCAAACTAGGCTAAGCTTGCTGGCATACCTTCTCTAATTCATTACCT
TCH01_0043_A11.b : GTTTTATTAATGACCAAACTAGGCTAAGCTTGCTGGCATACCTTCTCTAATTCATTACCT


20060611C-008781 : GGAGTCAGCTCCACCCTGGCTCTGGCTCTGGCTAGAATTTCACGGAATGACAGAGGGGCA
                   ---------+---------+---------+---------+---------+---------+ 751
OVR01_0027_F12.b : GGAGTCAGCTCCACCCTGGCTCTGGCTCTGACTAGAATTTCACGGAATGACAGAGGGGCA
TCH01_0043_A11.b : GGAGTCAGCTCCACCCTGGCTCTGGCTCTGGCTAGAATTTCACGGAATGACAGAGGGGCA


20060611C-008781 : GTCCTTTCCCTTAA*TCAACATCTGTGGGC*TTTGCC*AGGACCAGAGGGCATGACTC*T
                   ---------+---------+---------+---------+---------+---------+ 807
OVR01_0027_F12.b : GTCCTTTCCCTTAAATCAACATCTGTGGGCTTTTGCCCAGGACCAGAGGGCATGACTCTT
TCH01_0043_A11.b : GTCCTTTCCCTTAA*TCAACATCTGTGGGC*TTTGCC*AGGACCAGAGGGCATGACTC*T


20060611C-008781 : TTGGGGACATTAGGAGGCTGATGGATAAGCCAAAGAACTCCTATAAAACTATGCTGAATT
                   ---------+---------+---------+---------+---------+---------+ 867
OVR01_0027_F12.b : TTGGGGACATTANGAGGCTGATGGATAAGCCAAAGAACTCCTATAAAACTATGCTGAATT
TCH01_0043_A11.b : TTGGGGACATTAGGAGGCTGATGGATAAGCCAAAGAACTCCTATAAAACTATGCTGAATT


20060611C-008781 : TTCCATTGCAGTCAAGTGGTTCACAGACATGTATAGGTGAGAGG................
                   ---------+---------+---------+---------+---------+---------+ 911
OVR01_0027_F12.b : TTCCATTGCAgtcaagtgtttcacaaacttgtataggtgagaaggtcaaacgaaaagagg
TCH01_0043_A11.b : TTCCATTGCAGTCAAGTGGTTCACAGACATGTATAGGTGAGAGGgtcaacgagaagaggg


20060611C-008781 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 911
OVR01_0027_F12.b : aatgaaaatacgggatgaagattatccacagtcccagtggtgaaaaaggcaattaaggag
TCH01_0043_A11.b : atgaaaatacgggatgaggatgatccaccgtcccagtgtggaaaagcaataaggaggcag


20060611C-008781 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 911
OVR01_0027_F12.b : ggagggtttggggaccaaacttgcgttttgggggagggcccattgtggggggatcccccg
TCH01_0043_A11.b : gtttgtggaccacctgcttttgggaaggccatggtggggatcccggggaagcaggaaatt


20060611C-008781 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 911
OVR01_0027_F12.b : gggaaatgccggggaaaattttttttccccaaaaac                       
TCH01_0043_A11.b : tttccaaaacctttaacggtcttaaaattcaattccacctctctaccgcaactattttaa


20060611C-008781 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 911
OVR01_0027_F12.b :                                                             
TCH01_0043_A11.b : ggggcgttgtaaaccttaggaaaagaaaacaagggctcaaaagttacctttaaaggtcaa


20060611C-008781 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 911
OVR01_0027_F12.b :                                                             
TCH01_0043_A11.b : taaa