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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20060611C-008881

Length: 843

Sequence:  [FASTA format sequence]
GCTTTTATGA TTTAACGTTA CTGTGTAAGT ACTTTCCCAC ATTGCTACAC TTGCTTGGTG
GTTCTCATGG AAATTCCATT TTCCATGATC TTGACATTCT GGCTGGTGTT TCTGTCATCG
TCGACTCTGG CTTTCTGTTA CCTGAGTCAG GGTGTCTCTC CGGTCTGAGC TCTCGATCAC
ACTTAGCTTT CCTCTTGCAT GTCCTGTGTC AAGCAGCTTC TTCTTCGTCC ACTCTTGTGA
AACCTTCTGA CCGGAGGCTG CTACAGCCTT GCCACTTCCT TTACGGGGCT CAAGCCCCCT
CACACCCGTC ATGCTCACTA GTACCCGATC ATCCTCTGCC CGGGAGTGCC ACCCCAGTTA
ACTGCCCAGG GATTCCGTCT CCACCAAAGA GCCTCTGCAA ACCCTGCCTC CTGGAAAAAC
CTCTTCCCTA TTGGTAATCC ATGAATGCTA AGATGCATTG TAGATATAAT TTATATTCAC
GGCCATTTAT GCCCTGCCTT ATGTAGGCAG TTCAGCACCA AGGAGAGTGC CTGTTTGCTT
TTGCTTGGGT GCAAGGTCAG TGGAGGATTT ACTGTGTTTA GGGCTCTGTA GTGCTGTTGG
CACGATGTAA TTTTTCCATA ATAGATGAAA AGCCAAACCC TGTATAAACA CACTTTAATA
ATGGTGAAGG CACTGGCAGA GTTGTGTGCC GAGGAAATAT TAAAGTTCAC ACTCCTGTAG
CTTAGACTTA ATTGAAGCCA GTAGTCTTCG TATTTACATT TGGGTTGTTT GTTTGAATGT
CAGACCTGGA GTGCTTCATC AGATGTCTTC CACTCCTCTA CGTATAACTG CTTTAACCAC
CTG

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)
SNPW01254	0.9b	11	39.4
SNPW01254	0.91b	11	39.4

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
			zinc finger protein 703	30.4	1.9

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL

Alignment:      TOP

20060611C-008881 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
SPL01_0053_F09.b : nnnnggcattgtactaagacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
SPL01_0053_F08.b :   nnnttgctaggactatnacxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx


20060611C-008881 : ......................GCTTTTATGATTTAACGTTACTGTGTAAGTACTTTCCC
                   ---------+---------+---------+---------+---------+---------+ 38
SPL01_0053_F09.b : xxxxxxxxxxxxxxxxxxxxxxGCTTTTATGATTTAACGTTACTGTGTAAGTACTTTCCC
SPL01_0053_F08.b : xxxxxxxxxxxxxxxxxxxxxxGCTTTTATGATTTAACGTTACTGTGTAAGTACTTTCCC


20060611C-008881 : ACATTGCTACACTTGCTTGGTGGTTCTCATGGAAATTCCATTTTCCATGATCTTGACATT
                   ---------+---------+---------+---------+---------+---------+ 98
SPL01_0053_F09.b : ACATTGCTACACTTGCTTGGTGGTTCTCATGGAAATTCCATTTTCCATGATCTTGACATT
SPL01_0053_F08.b : ACATTGCTACACTTGCTTGGTGGTTCTCATGGAAATTCCATTTTCCATGATCTTGACATT


20060611C-008881 : CTGGCTGGTGTTTCTGTCATCGTCGACTCTGGCTTTCTGTTACCTGAGTCAGGGTGTCTC
                   ---------+---------+---------+---------+---------+---------+ 158
SPL01_0053_F09.b : CTGGCTGGTGTTTCTGTCATCGTCGACTCTGGCTTTCTGTTACCTGAGTCAGGGTGTCTC
SPL01_0053_F08.b : CTGGCTGGTGTTTCTGTCATCGTCGACTCTGGCTTTCTGTTACCTGAGTCAGGGTGTCTC


20060611C-008881 : TCCGGTCTGAGCTCTCGATCACACTTAGCTTTCCTCTTGCATGTCCTGTGTCAAGCAGCT
                   ---------+---------+---------+---------+---------+---------+ 218
SPL01_0053_F09.b : TCCGGTCTGAGCTCTCGATCACACTTAGCTTTCCTCTTGCATGTCCTGTGTCAAGCAGCT
SPL01_0053_F08.b : TCCGGTCTGAGCTCTCGATCACACTTAGCTTTCCTCTTGCATGTCCTGTGTCAAGCAGCT


20060611C-008881 : TCTTCTTCGTCCACTCTTGTGAAACCTTCTGACCGGAGGCTGCTACAGCCTTGCCACTTC
                   ---------+---------+---------+---------+---------+---------+ 278
SPL01_0053_F09.b : TCTTCTTCGTCCACTCTTGTGAAACCTTCTGACCGGAGGCTGCTACAGCCTTGCCACTTC
SPL01_0053_F08.b : TCTTCTTCGTCCACTCTTGTGAAACCTTCTGACCGGAGGCTGCTACAGCCTTGCCACTTC


20060611C-008881 : CTTTACGGGGCTCAAGCCCCCTCACACCCGTCATGCTCACTAGTACCCGATCATCCTCTG
                   ---------+---------+---------+---------+---------+---------+ 338
SPL01_0053_F09.b : CTTTACGGGGCTCAAGCCCCCTCACACCCGTCATGCTCACTAGTACCCGATCATCCTCTG
SPL01_0053_F08.b : CTTTACGGGGCTCAAGCCCCCTCACACCCGTCATGCTCACTAGTACCCGATCATCCTCTG


20060611C-008881 : CCCGGGAGTGCCACCCCAGTTAACTGCCCAGGGATTCCGTCTCCACCAAAGAGCCTCTGC
                   ---------+---------+---------+---------+---------+---------+ 398
SPL01_0053_F09.b : CCCGGGAGTGCCACCCCAGTTAACTGCCCAGGGATTCCGTCTCCACCAAAGAGCCTCTGC
SPL01_0053_F08.b : CCCGGGAGTGCCACCCCAGTTAACTGCCCAGGGATTCCGTCTCCACCAAAGAGCCTCTGC


20060611C-008881 : AAACCCTGCCTCCTGGAAAAACCTCTTCCCTATTGGTAATCCATGAATGCTAAGATGCAT
                   ---------+---------+---------+---------+---------+---------+ 458
SPL01_0053_F09.b : AAACCCTGCCTCCTGGAAAAACCTCTTCCCTATTGGTAATCCATGAATGCTAAGATGCAT
SPL01_0053_F08.b : AAACCCTGCCTCCTGGAAAAACCTCTTCCCTATTGGTAATCCATGAATGCTAAGATGCAT


20060611C-008881 : TGTAGATATAATTTATATTCACGGCCATTTATGCCCTGCCTTATGTAGGCAGTTCAGCAC
                   ---------+---------+---------+---------+---------+---------+ 518
SPL01_0053_F09.b : TGTAGATATAATTTATATTCACGGCCATTTATGCCCTGCCTTATGTAGGCAGTTCAGCAC
SPL01_0053_F08.b : TGTAGATATAATTTATATTCACGGCCATTTATGCCCTGCCTTATGTAGGCAGTTCAGCAC


20060611C-008881 : CAAGGAGAGTGCCTGTTTGCTTTTGCTTGGGTGCAAGGTCAGTGGAGGATTTACTGTGTT
                   ---------+---------+---------+---------+---------+---------+ 578
SPL01_0053_F09.b : CAAGGAGAGTGCCTGTTTGCTTTTGCTTGGGTGCAAGGTCAGTGGAGGATTTACTGTGTT
SPL01_0053_F08.b : CAAGGAGAGTGCCTGTTTGCTTTTGCTTGGGTGCAAGGTCAGTGGAGGATTTACTGTGTT


20060611C-008881 : TAGGGCTCTGTAGTGCTGTTGGCACGATGTAATTTTTCCATAATAGATGAAAAGCCAAAC
                   ---------+---------+---------+---------+---------+---------+ 638
SPL01_0053_F09.b : TAGGGCTCTGTAGTGCTGTTGGCACGATGTAATTTTTCCATAATAGATGAAAAGCCAAAC
SPL01_0053_F08.b : TAGGGCTCTGTAGTGCTGTTGGCACGATGTAATTTTTCCATAATAGATGAAAAGCCAAAC


20060611C-008881 : CCTGTATAAACACACTTTAATAATGGTGAAGGCACTGGCAGAGTTGTGTGCCGAGGAAAT
                   ---------+---------+---------+---------+---------+---------+ 698
SPL01_0053_F09.b : CCTGTATAAACACACTTTAATAATGGTGAAGGCACTGGCAGAGTTGTGTGCCGAGGAAAT
SPL01_0053_F08.b : CCTGTATAAACACACTTTAATAATGGTGAAGGCACTGGCAGAGTTGTGTGCCGAGGAAAT


20060611C-008881 : ATTAAAGTTCACACTCCTGTAGCTTAGACTTAATTGAAGCCAGTAGTCTTCGTATTTACA
                   ---------+---------+---------+---------+---------+---------+ 758
SPL01_0053_F09.b : ATTAAAGTTCACACTCCTGTAGCTTAGACTTAATTGAAGCCAGTAGTCTTCGTATTTACA
SPL01_0053_F08.b : ATTAAAGTTCACACTCCTGTAGCTTAGACTTAATTGAAGCCAGTAGTCTTCGTATTTACA


20060611C-008881 : TTTGGGTTGTTTGTTTGAATGTCAGACCTGGAGTGCTTCATCAGATGTCTTCCACTCCTC
                   ---------+---------+---------+---------+---------+---------+ 818
SPL01_0053_F09.b : TTTGGGTTGTTTGTTTGAATGTCAGACCTGGAGTGCTTCATCAGATGTCTTCCACTCCTC
SPL01_0053_F08.b : TTTGGGGTGTTTGTTTGAATGTCAGACCTGGAGTGCTTCATCAGATGTCTTCCACTCCTC


20060611C-008881 : TACGTATAACTGCTTTAACCACCTG...................................
                   ---------+---------+---------+---------+---------+---------+ 843
SPL01_0053_F09.b : TACGTATAACTGCTTaaacacctgccccaggattccctttggtctctatcttggctcccg
SPL01_0053_F08.b : TACGTATAACTGCTTTAACCACCTGcgnccaggattcccctttggtctctatcttgtctc


20060611C-008881 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 843
SPL01_0053_F09.b : gcccagggaccgagtcgcattttcccttgtgtgccctggacatcctgacatggtgcctgg
SPL01_0053_F08.b : cgggcccagggacagaagtcgcatttttcttttgtgtgccttggacttccctgacatggt


20060611C-008881 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 843
SPL01_0053_F09.b : cttcctttgctccaattatctctagggctgagaggcacagattcctcattacctgttgcc
SPL01_0053_F08.b : gcctggccttcccttgctccgcattaactccaaggctgaaaaggaaaaaattcctcatta


20060611C-008881 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 843
SPL01_0053_F09.b : ttcctgacccaaaaaaaaaaaaaaaaaaaaggccccatgtgccc               
SPL01_0053_F08.b : actgtttgcttccctgaccaaaaaaaaaaaaaaaaaaaaaaaggccccactgtgcctcaa


20060611C-008881 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 843
SPL01_0053_F09.b :                                                             
SPL01_0053_F08.b : acctgcaagtc