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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20060611C-009034

Length: 839

Sequence:  [FASTA format sequence]
CTCACTGCTC TTCTGCTCCC TGAAACTCAG CTGCCAGGGG AGCCGGGGCT GCCCTACGAA
GCCGTCCCCT CCATACTGGA CCCCTACAGG GAGCCACGTG TGCCCAGCGG GGGCACCGCC
CCAGCTGATG CCCCAGAGGG GCCACCCATC TCAAGAGGGG CTCCGGGTCC TGCCTGGCCT
CCTCATGGCA CATGAGCCAG AGCCTGAGGC TGATGGGTTA CTGGACCTCA GCTTCCTGAC
GGAGGAGGAA CAGGAAGCCA TTGCTGAGGT CCTGAAGCGA GATGCCCACC TACGGCAGCT
GGAGGAGGGA CGGGTCAGAA AGCTCCGGGC ATCACTGGAA GACCCTGGGC AGCTGAAGAT
CCTAACAGGG GACTGGTTCC AGGAAGCACG CTCCCAGAGG CACCACCACA CCCACCTGGG
TTCTGACCTA GTCCGAGCCT CCATCCGCAG AAAGAAGGGC TCCAGGGGAG ACCAGGCTCG
GGGCAGCAAT GGGGAGGCTG AGGCTGCTGG GAAAGAGACC GAAGAGGCGC TGGAGCCCAG
GCTCCCCATA GACAAGGCCC CCCAAGAGAG TCTCAGCGAG GCTGAGGGAC CTGATTTCCC
CTCACCATAT GTCCCCACTA AGGCATCAGA TAATGAAGAG GAGCCCCCGG CCCAGGAAGC
GCCTGGGCCG GCGGACGTTC AGGTCCCAGC CGCGGAGGAG GCGGACCCGG AGCCAAAGCC
GCCGTCGGGG GCGGAGGAGG AGCCGCAACC CAGGCCTGCT CAGACCCAGG AGGCGTCCGA
AATCCTGGGA GAATGGGGAG GAGGCCCCGG GGCCTGACCC CTCACTGGAC CGTATGCTC

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)
SNP000587	0.91b	6	120
SNP000587	0.9b	6	120.7

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
			synaptotagmin-like 1	230	4e-66	O
			synaptotagmin-like 2	90.1	2e-18	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL

Alignment:      TOP

20060611C-009034 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
LVR01_0048_B04.b : gggggtttttttagcattggxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
LVRM1_0039_H04.b :                                   gagttgtcxxxxxxxxxxxxxxxxxx


20060611C-009034 : .................................CTCACTGCTCTTCTGCTCCCTGAAACT
                   ---------+---------+---------+---------+---------+---------+ 27
LVR01_0048_B04.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCTCACTGCTCTTCTGCTCCCTGAAACT
LVRM1_0039_H04.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxtACTGCTCTTCTGCTCCCTGAAACT


20060611C-009034 : CAGCTGCCAGGGGAGCCGGGGCTGCCCTACGAAGCCGTCCCCTCCATACTGGACCCCTAC
                   ---------+---------+---------+---------+---------+---------+ 87
LVR01_0048_B04.b : CAGCTGCCAGGGGAGCCGGGGCTGCCCTACGAAGCCGTCCCCTCCATACTGGACCCCTAC
LVRM1_0039_H04.b : CAGCTGCCAGGGGAGCCGGGGCTGCCCTACGAAGCCGTCCCCTCCATACTGGACCCCTAC


20060611C-009034 : AGGGAGCCACGTGTGCCCAGCGGGGGCACCGCCCCAGCTGATGCCCCAGAGGGGCCACCC
                   ---------+---------+---------+---------+---------+---------+ 147
LVR01_0048_B04.b : AGGGAGCCACGTGTGCCCAGCGGGGGCACCGCCCCAGCTGATGCCCCAGAGGGGCCACCC
LVRM1_0039_H04.b : AGGGAGCCACGTGTGCCCAGCGGGGGCACCGCCCCAGCTGATGCCCCAGAGGGGCCACCC


20060611C-009034 : ATCTCAAGAGGGGCTCCGGGTCCTGCCTGGCCTCCTCATGGCACATGAGCCAGAGCCTGA
                   ---------+---------+---------+---------+---------+---------+ 207
LVR01_0048_B04.b : ATCTCAAGAGGGGCTCCGGGTCCTGCCTGGCCTCCTCATGGCACATGAGCCAGAGCCTGA
LVRM1_0039_H04.b : ATCTCAAGAGGGGCTCCGGGTCCTGCCTGGCCTCCTCATGGCACATGAGCCAGAGCCTGA


20060611C-009034 : GGCTGATGGGTTACTGGACCTCAGCTTCCTGACGGAGGAGGAACAGGAAGCCATTGCTGA
                   ---------+---------+---------+---------+---------+---------+ 267
LVR01_0048_B04.b : GGCTGATGGGTTACTGGACCTCAGCTTCCTGACGGAGGAGGAACAGGAAGCCATTGCTGA
LVRM1_0039_H04.b : GGCTGATGGGTTACTGGACCTCAGCTTCCTGACGGAGGAGGAACAGGAAGCCATTGCTGA


20060611C-009034 : GGTCCTGAAGCGAGATGCCCACCTACGGCAGCTGGAGGAGGGACGGGTCAGAAAGCTCCG
                   ---------+---------+---------+---------+---------+---------+ 327
LVR01_0048_B04.b : GGTCCTGAAGCGAGATGCCCACCTACGGCAGCTGGAGGAGGGACGGGTCAGAAAGCTCCG
LVRM1_0039_H04.b : GGTCCTGAAGCGAGATGCCCACCTACGGCAGCTGGAGGAGGGACGGGTCAGAAAGCTCCG


20060611C-009034 : GGCATCACTGGAAGACCCTGGGCAGCTGAAGATCCTAACAGGGGACTGGTTCCAGGAAGC
                   ---------+---------+---------+---------+---------+---------+ 387
LVR01_0048_B04.b : GGCATCACTGGAAGACCCTGGGCAGCTGAAGATCCTAACAGGGGACTGGTTCCAGGAAGC
LVRM1_0039_H04.b : GGCATCACTGGAAGACCCTGGGCAGCTGAAGATCCTAACAGGGGACTGGTTCCAGGAAGC


20060611C-009034 : ACGCTCCCAGAGGCACCACCACACCCACCTGGGTTCTGACCTAGTCCGAGCCTCCATCCG
                   ---------+---------+---------+---------+---------+---------+ 447
LVR01_0048_B04.b : ACGCTCCCAGAGGCACCACCACACCCACCTGGGTTCTGACCTAGTCCGAGCCTCCATCCG
LVRM1_0039_H04.b : ACGCTCCCAGAGGCACCACCACACCCACCTGGGTTCTGACCTAGTCCGAGCCTCCATCCG


20060611C-009034 : CAGAAAGAAGGGCTCCAGGGGAGACCAGGCTCGGGGCAGCAATGGGGAGGCTGAGGCTGC
                   ---------+---------+---------+---------+---------+---------+ 507
LVR01_0048_B04.b : CAGAAAGAAGGGCTCCAGGGGAGACCAGGCTCGGGGCAGCAATGGGGAGGCTGAGGCTGC
LVRM1_0039_H04.b : CAGAAAGAAGGGCTCCAGGGGAGACCAGGCTCGGGGCAGCAATGGGGAGGCTGAGGCTGC


20060611C-009034 : TGGGAAAGAGACCGAAGAGGCGCTGGAGCCCAGGCTCCCCATAGACAAGGCCCCCCAAGA
                   ---------+---------+---------+---------+---------+---------+ 567
LVR01_0048_B04.b : TGGGAAAGAGACCGAAGAGGCGCTGGAGCCCAGGCTCCCCATAGACAAGGCCCCCCAAGA
LVRM1_0039_H04.b : TGGGAAAGAGACCGAAGAGGCGCTGGAGCCCAGGCTCCCCATAGACAAGGCCCCCCAAGA


20060611C-009034 : GAGTCTCAGCGAGGCTGAGGGACCTGATTTCCCCTCACCATATGTCCCCACTAAGGCATC
                   ---------+---------+---------+---------+---------+---------+ 627
LVR01_0048_B04.b : GAGTCTCAGCGAGGCTGAGGGACCTGATTTCCCCTCACCATATGTCCCCACTAAGGCATC
LVRM1_0039_H04.b : GAGTCTCAGCGAGGCTGAGGGACCTGATTTCCCCTCACCATATGTCCCCACTAAGGCATC


20060611C-009034 : AGATAATGAAGAGGAGCCCCCGGCCCAGGAAGCGCCTGGGCCGGCGGACGTTCAGGTCCC
                   ---------+---------+---------+---------+---------+---------+ 687
LVR01_0048_B04.b : AGATAATGAAGAGGAGCCCCCGGCCCAGGAAGCGCCTGGGCCGGCGGACGTTCAGGTCCC
LVRM1_0039_H04.b : AGATAATGAAGAGGAGCCCCCGGCCCAGGTAGCGCCTGGGCCGGCGGACGTTCAAGTCCC


20060611C-009034 : AGCCGCGGAGGAGGCGGACCCGGAGCCAAAGCCGCCGTCGGGGGCGGAGGAGGAGCCGCA
                   ---------+---------+---------+---------+---------+---------+ 747
LVR01_0048_B04.b : AGCCGCGGAGGAGGCGGACCCGGAGCCAAAGCCGCCGTCGGGGGCGGAGGAGGAGCCGCA
LVRM1_0039_H04.b : AGCCGCGGAGGAGGCGGACCCGGAGCC*AAGCCGCCGTCGGGGGCGGAG          


20060611C-009034 : ACCCAGGCCTGCTCAGACCCAGGAGGCGTCCGAAATCCTGGGAGAATGGGGAGGAGGCCC
                   ---------+---------+---------+---------+---------+---------+ 807
LVR01_0048_B04.b : ACCCAGGCCTGCTCAGACCCAGGAGGCGTCCGAAATCCTGGGAGAATGGGGAGGAGGCCC
LVRM1_0039_H04.b :                                                             


20060611C-009034 : CGGGGCCTGACCCCTCACTGGACCGTATGCTC............................
                   ---------+---------+---------+---------+---------+---------+ 839
LVR01_0048_B04.b : CGGGGCCTGACCCCTCACTGGACCGTATGCTCagcaccagctccctcatggtccagcctc
LVRM1_0039_H04.b :                                                             


20060611C-009034 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 839
LVR01_0048_B04.b : aactcctccacgcttgagcggcagccagatgagccctgtcgggggaagcggaaggcggcg
LVRM1_0039_H04.b :                                                             


20060611C-009034 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 839
LVR01_0048_B04.b : gcagtgcaggtgcgccgcctcccttgcacttcgccgctgccctacgagccctggcgcccg
LVRM1_0039_H04.b :                                                             


20060611C-009034 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 839
LVR01_0048_B04.b : ccgaaccttcccggtgcccctgaatcccattgcccaggggcctggcccgccccccccccc
LVRM1_0039_H04.b :                                                             


20060611C-009034 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 839
LVR01_0048_B04.b : cccccccccgccttcaaaaccc                                     
LVRM1_0039_H04.b :