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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20070806C-003168

Length: 1,114

Sequence [FASTA format sequence]
TGGCGCGCTG TGCGGCGCAG GGCGGCTGGC ACAAACGGCG GCGCCGGGGC CGGAGGAAAA
AGCTGGCCAT CGTGACAGTT CTCTTCCCAA GCCCCTAGGG ACATCAGAGG ATTTGGGGAC
CAGCGAGCAC CCCCAGGGCA CGAGAAAAGT TTCTGTCACC TGCCCTGCCT CATCCTGCCC
CACGCCAGGC CCAGCTGCCC TGGCCCCCGG CTGCATCAAG TGGAGGAGGA GGAGGTGGAG
GAGGGTGGCA CCATGGGCCT GGGCCGTGCC CTCCATGCCC GGGGGATGAA GACACTGCTG
CCATGGACAG CCCGTGCCAG CCGCAGCCCC TGAGTCAGGC TCTCCCTCAG TTGCCTGGTT
CCGTGTCAGA ACCGTTGGAG CCTAACCGGG CCAGGATGGG GGTGGAGAGT TACCTGCCCT
GTCCCCTGCT GTCCTCCTAC CACTGTCCAG GAGCGCCTGG TGAGGCCTCG GCGGGAAGTG
GGACCCCCAG AGCCACAGCT ACTTCCACCA CAGCCAGCCC CCTGCGGGAG GGCTTCGGTG
GGCAGGATGG CGGCGAGCTG CGGCCGCTGC AGAGTGAGGG TGCTGCGGCA CTGGTCACCA
AGGGGTGCCA GCGGCTGGCA GCCCAGGGCG CCCGGCCTGA GGCCCCCAAA CGGAAATGGG
CAGAGGGTGG TGGGGATGCC CCCGCACCCA GCAAACGGCC CTGGGCCAGG CAGGAGAACC
AGGAGGCTGA AGCCGAGGGG GAGGGCTGCA GCAGTGGCAG TGGTGAGCCC AGTGCTGGGC
TGAGGGAGGA GGTGCTGCCC GCTGCACCGG AGCGCCTGGC CCTGGACTAT ATTGTGCCCT
GCATGCGGTA CTATGGCATC TGCGTCAAGG ACAGTTTCCT GGGGGCGGCA CTAGGTGGCC
GTGTGCTGGC CGAGGTGGAA GCCCTGAAGC GGGGCGGGCG CCTGCGTGAC GGGCAGCTAG
TGAGCCAGCG GGCTATCCCG CCACGCAGCA TCCGTGGGGA CCAGATTGCC TGGGTGGAAA
GCCATGAGCC CGGCTGCCGA AGCATTGGTG CTCTTATGGC CCACGTGGAT GCTGTAATCC
GCCACTGTGC TGGGAGGCTG GGCAGCTACG TCAT


SNP mapping information
SNP IDRel.Chr.Location (cM)


Assembly Overview:      TOP
Change score limit to  


BLAST on RefSeq (Human):      TOP

LocusDefinitionScoreE valueFL
Contig/Assembly ProteinEGLN2egl nine homolog 2 [Homo sapiens]. 369e-102O
Contig/Assembly ProteinEGLN2egl nine homolog 2 [Homo sapiens]. 369e-102O
Contig/Assembly ProteinEGLN1egl nine homolog 1 [Homo sapiens]. 1197e-27O
Contig/Assembly ProteinEGLN3egl nine homolog 3 [Homo sapiens]. 97.42e-20O


BLAST on RefSeq (Mouse):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinEgln2egl nine homolog 2 [Mus musculus]. 3432e-94O
Contig/Assembly ProteinEgln1egl nine homolog 1 [Mus musculus]. 1202e-27O
Contig/Assembly ProteinEgln3egl nine homolog 3 [Mus musculus]. 95.56e-20O


BLAST on RefSeq (Dog):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC484495PREDICTED: similar to EGL nine (C.elegans) homolog 2 isoform 1 isoform 2 [Canis familiaris]. 365e-101O
Contig/Assembly ProteinLOC484495PREDICTED: similar to EGL nine (C.elegans) homolog 2 isoform 1 isoform 1 [Canis familiaris]. 365e-101O
Contig/Assembly ProteinLOC488971PREDICTED: similar to egl nine homolog 1 [Canis familiaris]. 1172e-26O
Contig/Assembly ProteinLOC480286"PREDICTED: similar to Egl nine homolog 3, mitochondrial precursor (Hypoxia inducible factor prolyl hydroxylase 3) (HIF-prolyl hydroxylase 3) (HIF-PH3) (SM-20) [Canis familiaris]. "98.21e-20O


BLAST on RefSeq (Cattle):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinLOC100336408PREDICTED: egl nine homolog 1-like [Bos taurus]. 1172e-26O
Contig/Assembly ProteinEGLN1PREDICTED: egl nine homolog 1 [Bos taurus]. 1172e-26O
Contig/Assembly ProteinEGLN3egl nine homolog 3 [Bos taurus]. 98.21e-20O


BLAST on RefSeq (Pig):      TOP
LocusDefinitionScoreE valueFL
Contig/Assembly ProteinEGLN2PREDICTED: egl nine homolog 2-like [Sus scrofa]. 395e-110O
Contig/Assembly ProteinEGLN1"PREDICTED: LOW QUALITY PROTEIN: egl nine homolog 1, partial [Sus scrofa]. "1117e-25
Contig/Assembly ProteinLOC100152368PREDICTED: LOW QUALITY PROTEIN: egl nine homolog 3-like [Sus scrofa]. 96.72e-20O


Assembly Members: 4      TOP
LibraryPlateLoc.Read NameAccessionFull Seq.
ADR010028H12ADR01_0028_H12.bDB784009 
SKNB10049H10SKNB1_0049_H10.bDB802867 
TCH010042G04TCH01_0042_G04.bCJ025609 
THY010126D09THY01_0126_D09.bBP163993 AK239732

  

Alignment:      TOP

20070806C-003168 : .....................................................TGGCGCG
---------+---------+---------+---------+---------+---------+ 7
THY01_0126_D09.b : ttgtcaaaacagcggtaxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTGGCGCG
ADR01_0028_H12.b : nggcaacaxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTGGCGCG
SKNB1_0049_H10.b : nntttgannnnnnnncctacgttgctcggatgggc
TCH01_0042_G04.b :
20070806C-003168 : CTGTGCGGCGCAGGGCGGCTGGCACAAACGGCGGCGCCGGGGCCGGAGGAAAAAGCTGGC
---------+---------+---------+---------+---------+---------+ 67
THY01_0126_D09.b : CTGTGCGGCGCAGGGCGGCTGGCACAAACGGCGGCGCCGGGGCCGGAGGAAAAAGCTGGC
ADR01_0028_H12.b : CTGTGCGGCGCAGGGCGGCTGGCACAAACGGCGGCGCCGGGGCCGGAGGAAAAAGCTGGC
SKNB1_0049_H10.b : gctnGCGGCGCAG*GCGGCTGGCACAAACGGCGGCGCCGGGGCCGGAGGAAAAAGCTGGC
TCH01_0042_G04.b :
20070806C-003168 : CATCGTGACAGTTCTCTTCCCAAGCCCCTAGGGACATCAGAGGATTTGGGGACCAGCGAG
---------+---------+---------+---------+---------+---------+ 127
THY01_0126_D09.b : CATCGTGACAGTTCTCTTCCCAAGCCCCTAGGGACATCAGAGGATTTGGGGACCAGCGAG
ADR01_0028_H12.b : CATCGTGACAGTTCTCTTCCCAAGCCCCTAGGGACATCAGAGGATTTGGGGACCAGCGAG
SKNB1_0049_H10.b : CATCGTGACAGTTCTCTTCCCAAGCCCCTAGGGACATCAGAGGATTTGGGGGCCAGCGAG
TCH01_0042_G04.b :
20070806C-003168 : CACCCCCAGGGCACGAGAAAAGTTTCTGTCACCTGCCCTGCCTCATCCTGCCCCACGCCA
---------+---------+---------+---------+---------+---------+ 187
THY01_0126_D09.b : CACCCCCAGGGCACGAGAAAAGTTTCTGTCACCTGCCCTGCCTCATCCTGCCCCACGCCA
ADR01_0028_H12.b : CACCCCCAGGGCACGAGAAAAGTTTCTGTCACCTGCCCTGCCTCATCCTGCCCCACGCCA
SKNB1_0049_H10.b : CACCCCCAGGGCACGAGAAAAGTTTCTGTCACCTGCCCTGCCTCATCCTGCCCCACGCCA
TCH01_0042_G04.b : nnnaagcttggactatgacxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
20070806C-003168 : GGCCCAGCTGCCCTGGCCCCCGGCTGCATCAAGTGGAGGAGGAGGAGGTGG*AGGAGGGT
---------+---------+---------+---------+---------+---------+ 246
THY01_0126_D09.b : GGCCCAGCTGCCCTGGCCCCCGGCTGCATCAAGTGGAGGAGGAGGAGGTGG*AGGAGGGT
ADR01_0028_H12.b : GGCCCAGCTGCCCTGGCCCCCGGCTGCATCAAGTGGAGGAGGAGGAGGTGG*AGGAGGGT
SKNB1_0049_H10.b : GGCCCAGCTGCCCTGGCCCCCGGCTGCATCAAGTGGAGGAGGAGGAGGTGGNAGGAGGGT
TCH01_0042_G04.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxtggcgcgctgtgcggcgcagggcggct
20070806C-003168 : GGCACCATGGGCCTGGGCCGTGCCCTCCATGCCCGGGGGATGAAGACACTGCTGCCATGG
---------+---------+---------+---------+---------+---------+ 306
THY01_0126_D09.b : GGCACCATGGGCCTGGGCCGTGCCCTCCATGCCCGGGGGATGAAGACACTGCTGCCATGG
ADR01_0028_H12.b : GGCACCATGGGCCTGGGCCGTGCCCTCCATGCCCGGGGGATGAAGACACTGCTGCCATGG
SKNB1_0049_H10.b : GGCACCATGGGCCTGGGCCGTGCCCTCCATGCCCGGGGGATGAAGACACTGCTGCCATGG
TCH01_0042_G04.b : ggcacaaacggcggcgccggggccggaggaaaaagctggccatcgtgacagttctcttcc
20070806C-003168 : ACAGCCCGTGCCAGCCGCAGCCCCTGAGTCAGGCTCTCCCTCAGTTGCCTGGTTCCGTGT
---------+---------+---------+---------+---------+---------+ 366
THY01_0126_D09.b : ACAGCCCGTGCCAGCCGCAGCCCCTGAGTCAGGCTCTCCCTCAGTTGCCTGGTTCCGTGT
ADR01_0028_H12.b : ACAGCCCGTGCCAGCCGCAGCCCCTGAGTCAGGCTCTCCCTCAGTTGCCTGGTTCCGTGT
SKNB1_0049_H10.b : ACAGCCCGTGCCAGCCGCAGCCCCTGAGTCAGGCTCTCCCTCAGTTGCCTGGTTCCGTGT
TCH01_0042_G04.b : caagcccctagggacatCAGCCCCTGAGTCAGGCTCTCCCTCAGTTGCCTGGTTCCGTGT
20070806C-003168 : CAGAACCGTTGGAGCCTAACCGGGCCAGGATGGGGGTGGAGAGTTACCTGCCCTGTCCCC
---------+---------+---------+---------+---------+---------+ 426
THY01_0126_D09.b : CAGAACCGTTGGAGCCTAACCGGGCCAGGATGGGGGTGGAGAGTTACCTGCCCTGTCCCC
ADR01_0028_H12.b : CAGAACCGTTGGAGCCTAACCGGGCCAGGATGGGGGTGGAGAGTTACCTGCCCTGTCCCC
SKNB1_0049_H10.b : CAGAACCGTTGGAGCCTAACCGGGCCAGGATGGGGGTGGAGAGTTACCTGCCCTGTCCCC
TCH01_0042_G04.b : CAGAACCGTTGGAGCCTAACCGGGCCAGGATGGGGGTGGAGAGTTACCTGCCCTGTCCCC
20070806C-003168 : TGCTGTCCTCCTACCACTGTCCAGGAGCGCCTGGTGAGGCCTCGGCGGGAAGTGGGACCC
---------+---------+---------+---------+---------+---------+ 486
THY01_0126_D09.b : TGCTGTCCTCCTACCACTGTCCAGGAGCGCCTGGTGAGGCCTCGGCGGGAAGTGGGACCC
ADR01_0028_H12.b : TGCTGTCCTCCTACCACTGTCCAGGAGCGCCTGGTGAGGCCTCGGCGGGAAGTGGGACCC
SKNB1_0049_H10.b : TGCTGTCCTCCTACCACTGTCCAGGAGCGCCTGGTGAGGCCTCGGCGGGAAGTGGGACCC
TCH01_0042_G04.b : TGCTGTCCTCCTACCACTGTCCAGGAGCGCCTGGTGAGGCCTCGGCGGGAAGTGGGACCC
20070806C-003168 : CCAGAGCCACAGCTACTTCCACCACAGCCAGCCCCCTGCGGGAGGGCTTCGGTGGGCAGG
---------+---------+---------+---------+---------+---------+ 546
THY01_0126_D09.b : CCAGAGCCACAGCTACTTCCACCACAGCCACCCCCCTGCGGGAAGGCTTCGGTGGGCAGG
ADR01_0028_H12.b : CCAGAGCCACAGCTACTTCCACCACAGCCAGCCCCCTGCGGGAGGGCTTCGGTGGGCAGG
SKNB1_0049_H10.b : CCAGAGCCACAGCTACTTCCACCACAGCCAGCCCCCTGCGGGAGGGCTTCGGTGGGCAGG
TCH01_0042_G04.b : CCAGAGCCACAGCTACTTCCACCACAGCCAGCCCCCTGCGGGAGGGCTTCGGTGGGCAGG
20070806C-003168 : ATGGCGGCGAGCTGCGGCCGCTGCAGAGTGAGGGTGCTGCGGCACTGGTCACCAAGGGGT
---------+---------+---------+---------+---------+---------+ 606
THY01_0126_D09.b : ATGGGGGGCAGCTGCGGCCCCTGCAaattaggttgctgcggccttgttcaccagggtgcg
ADR01_0028_H12.b : ATGGCGGCGAGCTGCGGCCGCTGCAAAGTGANGGTGCTGCGGCACTGGTCACCAAGGGGT
SKNB1_0049_H10.b : ATGGCGGCGAGCTGCGGCCGCTGCAGAGTGAGGGTGCTGCGGCACTGGTCACCAAGGGGT
TCH01_0042_G04.b : ATGGCGGCGAGCTGCGGCCGCTGCAGAGTGAGGGTGCTGCGGCACTGGTCACCAAGGGGT
20070806C-003168 : GCCAGCGGCTGGCAGCCCAGGGCGCCCGGCCTGAGGCCCCCAAACGGAAATGGGCAGAGG
---------+---------+---------+---------+---------+---------+ 666
THY01_0126_D09.b : gccgttggcg
ADR01_0028_H12.b : GCCAGCGGCTGGCAGCCCNAGGCGCCCGGCCTGANGCCCCCCAACGGAAATGGGCAAANG
SKNB1_0049_H10.b : GCCAGCGGCTGGCAGCCCAGGGCGCCCGGCCTGAGGCCCCCAAACGGAA*TGGGCAAGGG
TCH01_0042_G04.b : GCCAGCGGCTGGCAGCCCAGGGCGCCCGGCCTGAGGCCCCCAAACGGAAATGGGCAGAGG
20070806C-003168 : GTGGT*GGGGATGCCCCCGCACCCAGCAAACGGCCCTGGGCCAGGCAGGAGAACCAGGAG
---------+---------+---------+---------+---------+---------+ 725
THY01_0126_D09.b :
ADR01_0028_H12.b : GTGGT*GGGGATGCCCCCGCACCCAGCAAACGGCCCTGGGGCAGGCAGGAAAACCACGAA
SKNB1_0049_H10.b : GTGGTTGGGGATGCCCCCGCACCCAGCAAACGGCCCTGGGCCAGGCAGGAGAACCAGGAG
TCH01_0042_G04.b : GTGGT*GGGGATGCCCCCGCACCCAGCAAACGGCCCTGGGCCAGGCAGGAGAACCAGGAG
20070806C-003168 : GCTGAAGCCGAGGGGGAGGGCTGCAGCAGTGGCAGTGGTGAGCCCAGTGC*TGGGCTGAG
---------+---------+---------+---------+---------+---------+ 784
THY01_0126_D09.b :
ADR01_0028_H12.b : GCTGAAGGCGAGGGGGAGGGCTGCANCATTGGCANTGGTGGAGCCAATGCCTGGGCTGAA
SKNB1_0049_H10.b : GCTGAAGCCGAGGGGGAGGGCTGCAGCAGTGGCAGTGGTGAGCCCAGTGC*TGGGCTGAG
TCH01_0042_G04.b : GCTGAGGCCGAGGGGGAGGGCTGCAGCAGTGGCAGTGGTGAGCCCAGTGC*TGGGCTGAG
20070806C-003168 : GGAGGAGGTGCTGCCCGCTGCACCGGAGCGCCTGGCCCTGGACTATATTGTGCCCTGCAT
---------+---------+---------+---------+---------+---------+ 844
THY01_0126_D09.b :
ADR01_0028_H12.b : GGAAGAAGTGCTGCCCccttgcaccgaacgcccgggccctggaataaattggggcccgca
SKNB1_0049_H10.b : GGAGGAAGTGCTGCCCGCTGCACCGGAGCGCCTGGCCCTGAACTATATTGTGCCCTGCAT
TCH01_0042_G04.b : GGAGGAGGTGCTGCCCGCTGCACCGGAGCGCCTGGCCCTGGACTATATTGTGCCCTGCAT
20070806C-003168 : GCGGTACTATGGCATCTGCGTCAAGGACAGTTTCCTGGGGGCGGCACTAGGTGGCCGTGT
---------+---------+---------+---------+---------+---------+ 904
THY01_0126_D09.b :
ADR01_0028_H12.b : aggcggaacaatggcatctgccttcaaggaaagttttcctggggggcgcacctaaggggg
SKNB1_0049_H10.b : GCGGTACTATGGCATCTGCGTCCAAGACAGTTTCCTGGGGGCGGCACTAAGTGGCCCTGT
TCH01_0042_G04.b : GCGGTACTATGGCATCTGCGTCAAGGACAGTTTCCTGGGGGCGGCACTAGGTGGCCGTGT
20070806C-003168 : GCTGGCCGAGGTGGAAGCCCTGAAGCGGGGCGGGCGCCTGCGTGACGGGCAGCTAGTGAG
---------+---------+---------+---------+---------+---------+ 964
THY01_0126_D09.b :
ADR01_0028_H12.b : ccttgggcttgcccaaatgggaaggcccttaaaacggggggggcgccctgcctgaaaggc
SKNB1_0049_H10.b : GCTGCCCAAGTTGGAAGCCCTGAANCGGGGCCGGCGCCTGCCTGACGGGCACCTAATGAA
TCH01_0042_G04.b : GCTGGCCGAGGTGGAGGCCCTGAAGCGGGGCGGGCGCCTGCGTGACGGGCAGCTAGTGAG
20070806C-003168 : CCAGCGGGCTATCCCGCCACGCAGCATCCGTGGGGACCAGATTGCCTGGGTGGAAAGCCA
---------+---------+---------+---------+---------+---------+ 1024
THY01_0126_D09.b :
ADR01_0028_H12.b : aaacttatgggcccacagggggttatccccccccccaaccatcctggggggaacaaaatt
SKNB1_0049_H10.b : CCAGCGGGCTATCCCGCCACGCACCATCCtggggaaccaaatgccctggttgaaaggcct
TCH01_0042_G04.b : CCAGCGGGCTATCCCGCCACGCAGCATCCGTGGGGACCAGATTGCCTGGGTGGAAAGCCA
20070806C-003168 : TGAGCCCGGCTGCCGAAGCATTGGTGCTCTTATGGCCCACGTGGATGCTGTAATCCGCCA
---------+---------+---------+---------+---------+---------+ 1084
THY01_0126_D09.b :
ADR01_0028_H12.b : gtccgggtgggaaaggcattaaccccggtgccccaaaaattgttggctcctttagggccc
SKNB1_0049_H10.b : taaccccgcttccaaaacatttgtcccctaaaggcccacgtgaaagctgaaacccccact
TCH01_0042_G04.b : TGAGCCCGGCTGCCGAAGCATTGGTGCTCTTATGGCCCACGTGGATGCTGTAATCCGCCA
20070806C-003168 : CTGTGCTGGGAGGCTGGGCAGCTACGTCAT..............................
---------+---------+---------+---------+---------+---------+ 1114
THY01_0126_D09.b :
ADR01_0028_H12.b : ccgggggagggtggtaaaccccccacgggggctgggggggcgggggggaatcactttttt
SKNB1_0049_H10.b : tgtcctggaaa
TCH01_0042_G04.b : CTGTGCTGGGAGGCTGGGCAGCTACGTCATccaagggcgcacccaagccatggtggcatg
20070806C-003168 : ............................................................
---------+---------+---------+---------+---------+---------+ 1114
THY01_0126_D09.b :
ADR01_0028_H12.b : ttaaggggggcgacccaagggccgtggggggggtgtttaaccccacacaaggggtggggg
SKNB1_0049_H10.b :
TCH01_0042_G04.b : ttacccagcaacgggctggggtacgtgagacacgttgacatccccacggcgatgggcgct
20070806C-003168 : ............................................................
---------+---------+---------+---------+---------+---------+ 1114
THY01_0126_D09.b :
ADR01_0028_H12.b : ggaaatgtgaaacaattttaaaaatccccctccggcagaaggggccgcgctcccccctcg
SKNB1_0049_H10.b :
TCH01_0042_G04.b : gctcaccgtatctatacctgaatcaaactgggactcagggtcatggcggcctgctgcaaa
20070806C-003168 : ............................................................
---------+---------+---------+---------+---------+---------+ 1114
THY01_0126_D09.b :
ADR01_0028_H12.b : tttctattatttctgaatcaacatagtgggcacacccggggtgtgagggggcgcctcgtc
SKNB1_0049_H10.b :
TCH01_0042_G04.b : attcccaaaggccggctggggtagcaacatcgagccatctttaacggttggtatttcttg
20070806C-003168 : ............................................................
---------+---------+---------+---------+---------+---------+ 1114
THY01_0126_D09.b :
ADR01_0028_H12.b : tcaaaaaaatcctccagagggcgcgctgtg
SKNB1_0049_H10.b :
TCH01_0042_G04.b : ttcgatggcgaaccccagtagggaaacagcctttccccggtatgcctcctgtttggtttt
20070806C-003168 : ............................................................
---------+---------+---------+---------+---------+---------+ 1114
THY01_0126_D09.b :
ADR01_0028_H12.b :
SKNB1_0049_H10.b :
TCH01_0042_G04.b : tgcccct