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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20070806C-005343

Length: 839

Sequence:  [FASTA format sequence]
CTCACTGCTC TTCTGCTCCC TGAAACTCAG CTGCCAGGGG AGCCGGGGCT GCCCTACGAA
GCCGTCCCCT CCATACTGGA CCCCTACAGG GAGCCACGTG TGCCCAGCGG GGGCACCGCC
CCAGCTGATG CCCCAGAGGG GCCACCCATC TCAAGAGGGG CTCCGGGTCC TGCCTGGCCT
CCTCATGGCA CATGAGCCAG AGCCTGAGGC TGATGGGTTA CTGGACCTCA GCTTCCTGAC
GGAGGAGGAA CAGGAAGCCA TTGCTGAGGT CCTGAAGCGA GATGCCCACC TACGGCAGCT
GGAGGAGGGA CGGGTCAGAA AGCTCCGGGC ATCACTGGAA GACCCTGGGC AGCTGAAGAT
CCTAACAGGG GACTGGTTCC AGGAAGCACG CTCCCAGAGG CACCACCACA CCCACCTGGG
TTCTGACCTA GTCCGAGCCT CCATCCGCAG AAAGAAGGGC TCCAGGGGAG ACCAGGCTCG
GGGCAGCAAT GGGGAGGCTG AGGCTGCTGG GAAAGAGACC GAAGAGGCGC TGGAGCCCAG
GCTCCCCATA GACAAGGCCC CCCAAGAGAG TCTCAGCGAG GCTGAGGGAC CTGATTTCCC
CTCACCATAT GTCCCCACTA AGGCATCAGA TAATGAAGAG GAGCCCCCGG CCCAGGAAGC
GCCTGGGCCG GCGGACGTTC AGGTCCCAGC CGCGGAGGAG GCGGACCCGG AGCCAAAGCC
GCCGTCGGGG GCGGAGGAGG AGCCGCAACC CAGGCCTGCT CAGACCCAGG AGGCGTCCGA
AATCCTGGGA GAATGGGGAG GAGGCCCCGG GGCCTGACCC CTCACTGGAC CGTATGCTC

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		SYTL1	synaptotagmin-like protein 1 isoform 1 [Homo sapiens].	257	3e-74	O
		SYTL1	synaptotagmin-like protein 1 isoform 2 [Homo sapiens].	229	7e-66	O
		SYTL2	synaptotagmin-like protein 2 isoform a [Homo sapiens].	90.1	2e-18	O
		SYTL2	synaptotagmin-like protein 2 isoform i [Homo sapiens].	90.1	2e-18	O
		SYTL2	synaptotagmin-like protein 2 isoform g [Homo sapiens].	90.1	2e-18	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		LOC100505202	PREDICTED: synaptotagmin-like protein 1-like isoform 1 [Mus musculus].	228	3e-60	O
		LOC100505202	PREDICTED: synaptotagmin-like protein 1-like isoform 3 [Mus musculus].	228	3e-60	O
		Sytl1	synaptotagmin-like protein 1 [Mus musculus].	228	3e-60	O
		LOC100505202	PREDICTED: synaptotagmin-like protein 1-like isoform 2 [Mus musculus].	205	4e-53	O
		Sytl2	synaptotagmin-like protein 2 isoform 3 [Mus musculus].	91.3	8e-19	O
		Sytl2	synaptotagmin-like protein 2 isoform 2 [Mus musculus].	91.3	8e-19	O
		Exph5	exophilin-5 [Mus musculus].	50.4	2e-06	O

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		LOC487346	PREDICTED: similar to synaptotagmin-like 1 [Canis familiaris].	271	3e-76	O
		LOC485154	PREDICTED: similar to synaptotagmin-like 2 isoform a isoform 5 [Canis familiaris].	91.3	1e-18	O
		LOC485154	PREDICTED: similar to synaptotagmin-like 2 isoform a isoform 1 [Canis familiaris].	91.3	1e-18	O
		LOC485154	PREDICTED: similar to synaptotagmin-like 2 isoform a isoform 3 [Canis familiaris].	91.3	1e-18	O

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		SYTL1	PREDICTED: synaptotagmin-like 1 [Bos taurus].	237	5e-66	O
		SYTL1	PREDICTED: synaptotagmin-like 1 [Bos taurus].	226	3e-59	O
		SYTL2	synaptotagmin-like protein 2 [Bos taurus].	89.4	4e-18	O

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		SYTL1	PREDICTED: synaptotagmin-like protein 1-like isoform 1 [Sus scrofa].	347	e-101	O
		SYTL1	PREDICTED: synaptotagmin-like protein 1-like isoform 2 [Sus scrofa].	311	2e-90	O
		LOC100516923	PREDICTED: synaptotagmin-like protein 2-like [Sus scrofa].	90.1	1e-18	O
		EXPH5	PREDICTED: exophilin-5-like [Sus scrofa].	50.4	1e-06	O

Alignment:      TOP

20070806C-005343 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
LVR01_0048_B04.b : gggggtttttttagcattggxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
LVRM1_0039_H04.b :                                   gagttgtcxxxxxxxxxxxxxxxxxx


20070806C-005343 : .................................CTCACTGCTCTTCTGCTCCCTGAAACT
                   ---------+---------+---------+---------+---------+---------+ 27
LVR01_0048_B04.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCTCACTGCTCTTCTGCTCCCTGAAACT
LVRM1_0039_H04.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxtACTGCTCTTCTGCTCCCTGAAACT


20070806C-005343 : CAGCTGCCAGGGGAGCCGGGGCTGCCCTACGAAGCCGTCCCCTCCATACTGGACCCCTAC
                   ---------+---------+---------+---------+---------+---------+ 87
LVR01_0048_B04.b : CAGCTGCCAGGGGAGCCGGGGCTGCCCTACGAAGCCGTCCCCTCCATACTGGACCCCTAC
LVRM1_0039_H04.b : CAGCTGCCAGGGGAGCCGGGGCTGCCCTACGAAGCCGTCCCCTCCATACTGGACCCCTAC


20070806C-005343 : AGGGAGCCACGTGTGCCCAGCGGGGGCACCGCCCCAGCTGATGCCCCAGAGGGGCCACCC
                   ---------+---------+---------+---------+---------+---------+ 147
LVR01_0048_B04.b : AGGGAGCCACGTGTGCCCAGCGGGGGCACCGCCCCAGCTGATGCCCCAGAGGGGCCACCC
LVRM1_0039_H04.b : AGGGAGCCACGTGTGCCCAGCGGGGGCACCGCCCCAGCTGATGCCCCAGAGGGGCCACCC


20070806C-005343 : ATCTCAAGAGGGGCTCCGGGTCCTGCCTGGCCTCCTCATGGCACATGAGCCAGAGCCTGA
                   ---------+---------+---------+---------+---------+---------+ 207
LVR01_0048_B04.b : ATCTCAAGAGGGGCTCCGGGTCCTGCCTGGCCTCCTCATGGCACATGAGCCAGAGCCTGA
LVRM1_0039_H04.b : ATCTCAAGAGGGGCTCCGGGTCCTGCCTGGCCTCCTCATGGCACATGAGCCAGAGCCTGA


20070806C-005343 : GGCTGATGGGTTACTGGACCTCAGCTTCCTGACGGAGGAGGAACAGGAAGCCATTGCTGA
                   ---------+---------+---------+---------+---------+---------+ 267
LVR01_0048_B04.b : GGCTGATGGGTTACTGGACCTCAGCTTCCTGACGGAGGAGGAACAGGAAGCCATTGCTGA
LVRM1_0039_H04.b : GGCTGATGGGTTACTGGACCTCAGCTTCCTGACGGAGGAGGAACAGGAAGCCATTGCTGA


20070806C-005343 : GGTCCTGAAGCGAGATGCCCACCTACGGCAGCTGGAGGAGGGACGGGTCAGAAAGCTCCG
                   ---------+---------+---------+---------+---------+---------+ 327
LVR01_0048_B04.b : GGTCCTGAAGCGAGATGCCCACCTACGGCAGCTGGAGGAGGGACGGGTCAGAAAGCTCCG
LVRM1_0039_H04.b : GGTCCTGAAGCGAGATGCCCACCTACGGCAGCTGGAGGAGGGACGGGTCAGAAAGCTCCG


20070806C-005343 : GGCATCACTGGAAGACCCTGGGCAGCTGAAGATCCTAACAGGGGACTGGTTCCAGGAAGC
                   ---------+---------+---------+---------+---------+---------+ 387
LVR01_0048_B04.b : GGCATCACTGGAAGACCCTGGGCAGCTGAAGATCCTAACAGGGGACTGGTTCCAGGAAGC
LVRM1_0039_H04.b : GGCATCACTGGAAGACCCTGGGCAGCTGAAGATCCTAACAGGGGACTGGTTCCAGGAAGC


20070806C-005343 : ACGCTCCCAGAGGCACCACCACACCCACCTGGGTTCTGACCTAGTCCGAGCCTCCATCCG
                   ---------+---------+---------+---------+---------+---------+ 447
LVR01_0048_B04.b : ACGCTCCCAGAGGCACCACCACACCCACCTGGGTTCTGACCTAGTCCGAGCCTCCATCCG
LVRM1_0039_H04.b : ACGCTCCCAGAGGCACCACCACACCCACCTGGGTTCTGACCTAGTCCGAGCCTCCATCCG


20070806C-005343 : CAGAAAGAAGGGCTCCAGGGGAGACCAGGCTCGGGGCAGCAATGGGGAGGCTGAGGCTGC
                   ---------+---------+---------+---------+---------+---------+ 507
LVR01_0048_B04.b : CAGAAAGAAGGGCTCCAGGGGAGACCAGGCTCGGGGCAGCAATGGGGAGGCTGAGGCTGC
LVRM1_0039_H04.b : CAGAAAGAAGGGCTCCAGGGGAGACCAGGCTCGGGGCAGCAATGGGGAGGCTGAGGCTGC


20070806C-005343 : TGGGAAAGAGACCGAAGAGGCGCTGGAGCCCAGGCTCCCCATAGACAAGGCCCCCCAAGA
                   ---------+---------+---------+---------+---------+---------+ 567
LVR01_0048_B04.b : TGGGAAAGAGACCGAAGAGGCGCTGGAGCCCAGGCTCCCCATAGACAAGGCCCCCCAAGA
LVRM1_0039_H04.b : TGGGAAAGAGACCGAAGAGGCGCTGGAGCCCAGGCTCCCCATAGACAAGGCCCCCCAAGA


20070806C-005343 : GAGTCTCAGCGAGGCTGAGGGACCTGATTTCCCCTCACCATATGTCCCCACTAAGGCATC
                   ---------+---------+---------+---------+---------+---------+ 627
LVR01_0048_B04.b : GAGTCTCAGCGAGGCTGAGGGACCTGATTTCCCCTCACCATATGTCCCCACTAAGGCATC
LVRM1_0039_H04.b : GAGTCTCAGCGAGGCTGAGGGACCTGATTTCCCCTCACCATATGTCCCCACTAAGGCATC


20070806C-005343 : AGATAATGAAGAGGAGCCCCCGGCCCAGGAAGCGCCTGGGCCGGCGGACGTTCAGGTCCC
                   ---------+---------+---------+---------+---------+---------+ 687
LVR01_0048_B04.b : AGATAATGAAGAGGAGCCCCCGGCCCAGGAAGCGCCTGGGCCGGCGGACGTTCAGGTCCC
LVRM1_0039_H04.b : AGATAATGAAGAGGAGCCCCCGGCCCAGGTAGCGCCTGGGCCGGCGGACGTTCAAGTCCC


20070806C-005343 : AGCCGCGGAGGAGGCGGACCCGGAGCCAAAGCCGCCGTCGGGGGCGGAGGAGGAGCCGCA
                   ---------+---------+---------+---------+---------+---------+ 747
LVR01_0048_B04.b : AGCCGCGGAGGAGGCGGACCCGGAGCCAAAGCCGCCGTCGGGGGCGGAGGAGGAGCCGCA
LVRM1_0039_H04.b : AGCCGCGGAGGAGGCGGACCCGGAGCC*AAGCCGCCGTCGGGGGCGGAG          


20070806C-005343 : ACCCAGGCCTGCTCAGACCCAGGAGGCGTCCGAAATCCTGGGAGAATGGGGAGGAGGCCC
                   ---------+---------+---------+---------+---------+---------+ 807
LVR01_0048_B04.b : ACCCAGGCCTGCTCAGACCCAGGAGGCGTCCGAAATCCTGGGAGAATGGGGAGGAGGCCC
LVRM1_0039_H04.b :                                                             


20070806C-005343 : CGGGGCCTGACCCCTCACTGGACCGTATGCTC............................
                   ---------+---------+---------+---------+---------+---------+ 839
LVR01_0048_B04.b : CGGGGCCTGACCCCTCACTGGACCGTATGCTCagcaccagctccctcatggtccagcctc
LVRM1_0039_H04.b :                                                             


20070806C-005343 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 839
LVR01_0048_B04.b : aactcctccacgcttgagcggcagccagatgagccctgtcgggggaagcggaaggcggcg
LVRM1_0039_H04.b :                                                             


20070806C-005343 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 839
LVR01_0048_B04.b : gcagtgcaggtgcgccgcctcccttgcacttcgccgctgccctacgagccctggcgcccg
LVRM1_0039_H04.b :                                                             


20070806C-005343 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 839
LVR01_0048_B04.b : ccgaaccttcccggtgcccctgaatcccattgcccaggggcctggcccgccccccccccc
LVRM1_0039_H04.b :                                                             


20070806C-005343 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 839
LVR01_0048_B04.b : cccccccccgccttcaaaaccc                                     
LVRM1_0039_H04.b :