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[Overview] [RefSeq] [Assembly & SNP] 

Assembly Name:  20070806S-063306

Length: 1,164

Sequence:  [FASTA format sequence]
AAACAXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXCA GCGCGATGGC
GGCGGCTCCT TCAGGCCCCT GAAGGGGGAT TTAGGCCCGG GAGATCCGAG TCCATCCGCG
GCGGGGAGAG GGCGAACGGG GTTGGCGGAG GCCGCCATGG AGCTCAGAGT GGGGAACAGG
TACCGGCTGG GCCGGAAGAT CGGCAGCGGG TCCTTCGGAG ACATCTATCT CGGTACGGAC
ATTGCTGCGG GAGAAGAAGT TGCCATCAAG CTTGAATGTG TCAAAACTAA GCACCCTCAG
CTCCACATCG AGAGCAAAAT CTACAAGATG ATGCAGGGAG GAGTGGGCAT CCCCACCATC
CGGTGGTGTG GGGCCGAGGG CGACTACAAC GTCATGGTCA TGGAGCTGCT GGGGCCCAGC
CTGGAGGACC TCTTCAACTT CTGCTCCAGG AAGTTCAGCC TCAAGACCGT CCTGCTGCTC
GCTGACCAGA TGATCAGCCG CATCGAGTAC ATCCACTCGA AGAACTTCAT CCACCGGGAC
GTGAAGCCGG ACAACTTCCT CATGGGGCTG GGCAAGAAGG GCAACCTGGT GTACATCATC
GACTTCGGGC TGGCCAAGAA GTACCGGGAC GCCCGCACCC ACCAGCACAT CCCCTACCGC
GAGAACAAGA ACCTCACCGG CACCGCGCGC TACGCCTCCA TCAACACGCA CCTCGGCATC
GAACAATCTC GGAGGGACGA CCTGGAATCT CTGGGCTACG TGCTCATGTA CTTCAACCTG
NGCTCGCTGC CCTGGCAGGG CCTGAANGCG GCCATCCAGC GCCAGAAGTA CGAGCGCATC
AGCGAGAAGA AGATGTCCAC GCCCATCGAG GTGCTCTGNC AAGGCTACCC CTCCGAGTTC
GCCACGTACC TGAACTTCTG CCGTTCCCTG CGCTTTGATG ACAAGCCTGA CTACTCCTAC
CTGAAGCAGC TCTTCCGGAA CCTGTTCCAC CGCAGGGCTT CTCCTACGAT AACTTCTTGA
ATGGAACTGC TCAATTTTGG AGCCGTCCGG GAACCGACAA CCCAAACGGA ACCCCGGGAC
CAAAGGAGCG CTGAAAAATT CCGAACCCAT CCCCCGGGCC TCCCTCAAGG CTTAGCGGCT
GAAGGGGACC AGAGGGGGCC TCCACCCCTT ACCTAATTAA AAGGGAACCT TTCCCGCCCG
TTCGCTTGAA AAACGCAAAG TGATTGGTTG CCCCGGGCCC CCTAATATCT CTTCGATCTT
GGGGGAAATC CCCCCTGTTC CCCGAAAAAT TCTTTAAACC CGCGATATNG NCTCCTTAAA
ACCCGTATTC GGGGGGCCCG CTCTCCCCGC GCGGAACCTC TTGAGAAATT GGACATTTGT
TAGACCCTAT AAATCCGGGT TCCCCCACCC CGAAAACACA

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		CSNK1D	casein kinase I isoform delta isoform 2 [Homo sapiens].	565	e-161	O
		CSNK1D	casein kinase I isoform delta isoform 1 [Homo sapiens].	565	e-161	O
		CSNK1E	casein kinase I isoform epsilon [Homo sapiens].	556	e-158	O
		CSNK1E	casein kinase I isoform epsilon [Homo sapiens].	556	e-158	O
		CSNK1A1	casein kinase I isoform alpha isoform 2 [Homo sapiens].	440	e-123	O
		CSNK1A1	casein kinase I isoform alpha isoform 1 [Homo sapiens].	425	e-119	O
		CSNK1A1L	casein kinase I isoform alpha-like [Homo sapiens].	420	e-117	O
		CSNK1G3	casein kinase I isoform gamma-3 isoform 3 [Homo sapiens].	332	5e-91	O
		CSNK1G3	casein kinase I isoform gamma-3 isoform 2 [Homo sapiens].	332	5e-91	O
		CSNK1G3	casein kinase I isoform gamma-3 isoform 4 [Homo sapiens].	332	5e-91	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL
		Csnk1d	casein kinase I isoform delta isoform 2 [Mus musculus].	565	e-161	O
		Csnk1d	casein kinase I isoform delta isoform 1 [Mus musculus].	565	e-161	O
		Csnk1e	casein kinase I isoform epsilon [Mus musculus].	556	e-159	O
		Csnk1a1	casein kinase I isoform alpha [Mus musculus].	440	e-123	O
		Csnk1g3	casein kinase I isoform gamma-3 [Mus musculus].	336	2e-92	O
		Csnk1g1	casein kinase I isoform gamma-1 [Mus musculus].	332	3e-91	O
		Csnk1g2	casein kinase I isoform gamma-2 isoform 2 [Mus musculus].	329	3e-90	O
		Csnk1g2	casein kinase I isoform gamma-2 isoform 1 [Mus musculus].	315	4e-86	O
		Ttbk1	tau-tubulin kinase 1 [Mus musculus].	165	5e-41	O
		Ttbk2	tau-tubulin kinase 2 isoform 2 [Mus musculus].	160	2e-39	O

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL
		LOC474510	PREDICTED: similar to casein kinase 1 epsilon isoform 8 [Canis familiaris].	556	e-158	O
		LOC474510	PREDICTED: similar to casein kinase 1 epsilon isoform 3 [Canis familiaris].	556	e-158	O
		LOC474510	PREDICTED: similar to casein kinase 1 epsilon isoform 1 [Canis familiaris].	551	e-157	O
		LOC474510	PREDICTED: similar to casein kinase 1 epsilon isoform 7 [Canis familiaris].	550	e-156	O
		LOC475928	"PREDICTED: similar to casein kinase 1, delta isoform 2 [Canis familiaris]. "	513	e-145	O
		LOC474510	PREDICTED: similar to casein kinase 1 epsilon isoform 6 [Canis familiaris].	508	e-144	O
		LOC479331	"PREDICTED: similar to casein kinase 1, alpha 1 isoform 15 [Canis familiaris]. "	440	e-123	O
		LOC479331	"PREDICTED: similar to Casein kinase I, alpha isoform (CKI-alpha) (CK1) isoform 1 [Canis familiaris]. "	440	e-123	O
		LOC479331	"PREDICTED: similar to Casein kinase I, alpha isoform (CKI-alpha) (CK1) isoform 3 [Canis familiaris]. "	440	e-123	O
		LOC479331	"PREDICTED: similar to Casein kinase I, alpha isoform (CKI-alpha) (CK1) isoform 12 [Canis familiaris]. "	439	e-123	O

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL
		CSNK1D	"casein kinase 1, delta [Bos taurus]. "	565	e-161	O
		CSNK1E	casein kinase 1 epsilon [Bos taurus].	545	e-155	O
		CSNK1A1	casein kinase I isoform alpha [Bos taurus].	440	e-123	O
		LOC100300748	PREDICTED: casein kinase I alpha-like [Bos taurus].	419	e-117	O
		LOC613515	PREDICTED: casein kinase I-like [Bos taurus].	412	e-115	O
		LOC613515	PREDICTED: casein kinase I-like [Bos taurus].	412	e-115	O
		LOC100138998	PREDICTED: casein kinase I-like [Bos taurus].	382	e-106	O
		LOC100138998	PREDICTED: casein kinase I-like [Bos taurus].	382	e-106	O
		CSNK1B	casein kinase I isoform beta [Bos taurus].	376	e-104	O
		CSNK1D	"PREDICTED: casein kinase 1, delta [Bos taurus]. "	376	e-104	O

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL
		CSNK1E	PREDICTED: casein kinase I isoform epsilon-like [Sus scrofa].	556	e-159	O
		LOC100514516	PREDICTED: casein kinase I isoform alpha-like isoform 1 [Sus scrofa].	440	e-124	O
		LOC100514516	PREDICTED: casein kinase I isoform alpha-like isoform 2 [Sus scrofa].	425	e-119	O
		LOC100511866	PREDICTED: casein kinase I isoform gamma-3-like [Sus scrofa].	336	1e-92	O
		CSNK1G2	PREDICTED: casein kinase I isoform gamma-2-like [Sus scrofa].	309	1e-84	O
		LOC100157196	"PREDICTED: casein kinase I isoform gamma-1-like, partial [Sus scrofa]. "	303	1e-82	O
		LOC100157536	PREDICTED: tau-tubulin kinase 1-like [Sus scrofa].	165	3e-41	O
		TTBK1	PREDICTED: tau-tubulin kinase 1-like [Sus scrofa].	165	3e-41
		VRK2	PREDICTED: serine/threonine-protein kinase VRK2-like [Sus scrofa].	117	8e-27	O
		LOC100157930	PREDICTED: serine/threonine-protein kinase VRK1-like [Sus scrofa].	106	2e-23