[Overview] [RefSeq] [Assembly & SNP] [Alignment]
Assembly Name: 20080515C-000637
Length:
1,207
Sequence:
[FASTA format sequence]
CTCGACCCCG ACGCCGCTGC CGCCGCAGGC CCCTCCACGC CCACACCCCC TACCCACTGC
CCAGCCATGG AGGCCATCAA GAAGAAGATG CAGATGCTGA AGCTGGACAA GGAGAACGCC
ATCGACCGGG CCGAGCAGGC GGAGTCGGAT AAGAAAGCTG CTGAGGAGAA GTGCAAGCAG
GTGGAGGAGG AGCTGACGCA CCTCCAGAAG AAGCTGAAGG GGACAGAGGA TGAGCTGGAC
AAATACTCCG AGAACCTGAA GGACGCGCAG GAAAAGCTGG AGCTGAGCGA GAAGAAAGCC
TCCGACGCCG AAGGGGATGT AGCAGCTCTC AATCGGCGCA TCCAACTCGT TGAGGAGGAG
TTGGACAGGG CTCAGGAACG ACTGGCCACA GCCCTGCAGA AGCTTGAGGA GGCAGAAAAG
GCTGCAGATG AGAGCGAGAG AGGAATGAAG GTGATAGAAA ACCGGGCCAT GAAAGATGAG
GAGAAGATGG AGATTCAGGA GATGCAGCTC AAAGAGGCCA AGCACATTGC CGAGGAGGCC
GACCGCAAAT ACGAGGAGGT AGCTCGTAAG TTGGTCATCC TGGAGGGCGA GCTGGAGAGG
GCAGAGGAGC GTGCCGAGGT GTCTGAACTA AAATGTGGTG ACCTGGAAGA AGAACTCAAG
AATGTCACCA ACAACCTGAA GTCGCTAGAG GCTGCATCTG AAAAGTATTC TGAAAAGGAG
GATAAATATG AAGAAGAGAT TAAACTTCTG TCTGACAAAC TGAAAGAGGC TGAGACCCGT
GCTGAATTTG CAGAGAGAAC AGTTGCAAAA CTGGAAAAGA CCATCGATGA CCTGGAAGAA
AAACTTGCCC AGGCCAAAGA AGAAAACGTG GGCTTACATC AAACACTGGA TCAGACACTA
AACGAACTAA ACTGTATATA ACCAAAACAA GAAGAGTCTC GTTCCATCAA AAACTTCCCA
AGCTACCTGG TTTTCTCTTC TCTTGTAAAA AGTTCCTTTT GTTATTTGCC CCCTTTTGCT
TTGCTGGAAA TGGCAAGCAA AATTTATAAA TACCTGTGAA CCCAATATTT TTGTATCAAA
AAAAAACTTT TTTAAACCCC CCAAGTCTAT ACCTTCCTTT TTTTCCTTTT CCCTTTTTTT
TTTTTCCAAG GGTGGGGCCC CCCCCCCCCT TTTTTTTTTC TCCCACCCTC TCTTTTTTTT
TTTTTTT
SNP mapping information
| SNP ID | Rel. | Chr. | Location (cM) |
|---|
| Locus | Definition | Score | E value | FL | ||
|---|---|---|---|---|---|---|
 |
 | TPM1 | tropomyosin 1 alpha chain isoform 3 | 330 | 2e-90 | O |
|
| TPM2 | tropomyosin 2 (beta) isoform 2 | 312 | 4e-85 | O |
|
| TPM1 | tropomyosin 1 alpha chain isoform 4 | 311 | 7e-85 | O |
|
| TPM1 | tropomyosin 1 alpha chain isoform 1 | 306 | 2e-83 | O |
|
| TPM3 | tropomyosin 3 isoform 1 | 306 | 2e-83 | O |
|
| TPM2 | tropomyosin 2 (beta) isoform 1 | 305 | 7e-83 | O |
|
| TPM1 | tropomyosin 1 alpha chain isoform 2 | 287 | 1e-77 | O |
|
| TPM1 | tropomyosin 1 alpha chain isoform 5 | 287 | 1e-77 | O |
|
| TPM1 | tropomyosin 1 alpha chain isoform 7 | 269 | 4e-72 | O |
|
| TPM4 | tropomyosin 4 | 251 | 9e-67 | O |
| Locus | Definition | Score | E value | FL |
|---|
| Locus | Definition | Score | E value | FL |
|---|
| Locus | Definition | Score | E value | FL |
|---|
| Locus | Definition | Score | E value | FL |
|---|
|
20080515C-000637 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
OVRM1_0200_C05.b : gagttgtcxxxxxxxxxxxxxxxxxxxxxxxxxxx
OVRM1_0094_A06.b : tagttgtcxxxxxxxxxxxxxxxxxxxxxxxxxxx
UTR01_0062_E04.b : gccttttgggtgxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
SKNB1_0063_C10.b : nngggg
20080515C-000637 : ..........................CTCGACCCCGACGCCGCTGCCGCCGCAGGCCCCT
---------+---------+---------+---------+---------+---------+ 34
OVRM1_0200_C05.b : xxxxxxxxxxxxxxxxxxxxxxxxxxCTCGACCCCGACGCCGCTGCCGCCGCAGGCCCCT
OVRM1_0094_A06.b : xxxxxxxxxxxxxxxxxxxxxxxxxxCTCGACACCGACGCCGCTGCCGCCGCAGGCCCCT
UTR01_0062_E04.b : xxxxxxxxxxxxxxxxxxxxxxxxxxCTCGACCCCGACGCCGCTGCCGCCGCAGGCCCCT
SKNB1_0063_C10.b : aaannnaaannccatgcgttgtgctccctcnaCCCGACGCCGCTGCCGCCGCAGGCCCCT
20080515C-000637 : CCACGCCCACACCCCCTACCCACTGCCCAGCCATGGAGGCCATCAAGAAGAAGATGCAGA
---------+---------+---------+---------+---------+---------+ 94
OVRM1_0200_C05.b : CCACGCCCACACCCCCTACCCACTGCCCAGCCATGGAGGCCATCAAGAAGAAGATGCAGA
OVRM1_0094_A06.b : CCACGCCCACACCCCCTACCCACTGCCCAGCCATGGAGGCCATCAAGAAGAAGATGCAGA
UTR01_0062_E04.b : CCACGCCCACACCCCCTACCCACTGCCCAGCCATGGAGGCCATCAAGAAGAAGATGCAGA
SKNB1_0063_C10.b : CCACGCCCACACCCCCTACCCACTGCCCAGCCATGGAGGCCGTCAAGAAGAAGATGCAGA
20080515C-000637 : TGCTGAAGCTGGACAAGGAGAACGCCATCGACCGGGCCGAGCAGGCGGAGTCGGATAAGA
---------+---------+---------+---------+---------+---------+ 154
OVRM1_0200_C05.b : TGCTGAAGCTGGACAAGGAGAACGCCATCGACCGGGCCGAGCAGGCGGAGTCGGATAAGA
OVRM1_0094_A06.b : TGCTGAAGCTGGACAAGGAGAACGCCATCGACCGGGCCGAGCAGGCGGAGTCGGATAAGA
UTR01_0062_E04.b : TGCTGAAGCTGGACAAGGAGAACGCCATCGACCGGGCCGAGCAGGCGGAGTCGGATAAGA
SKNB1_0063_C10.b : TGCTGAAGCTGGACAAGGAGAACGCCATCGACCGGGCCGAGCAGGCGGAGTCGGATAAGA
20080515C-000637 : AAGCTGCTGAGGAGAAGTGCAAGCAGGTGGAGGAGGAGCTGACGCACCTCCAGAAGAAGC
---------+---------+---------+---------+---------+---------+ 214
OVRM1_0200_C05.b : AAGCTGCTGAGGAGAAGTGCAAGCAGGTGGAGGAGGAGCTGACGCACCTCCAGAAGAAGC
OVRM1_0094_A06.b : AAGCTGCTGAGGAGAAGTGCAAGCAGGTGGAGGAGGAGCTGACGCACCTCCAGAAGAAGC
UTR01_0062_E04.b : AAGCTGCTGAGGAGAAGTGCAAGCAGGTGGAGGAGGAGCTGACGCACCTCCAGAAGAAGC
SKNB1_0063_C10.b : AAGCTGCTGAGGAGAAGTGCAAGCAGGTGGAGGAGGAGCTGACGCACCTCCAGAAGAAGC
20080515C-000637 : TGAAGGGGACAGAGGATGAGCTGGACAAATACTCCGAGAACCTGAAGGACGCGCAGGAAA
---------+---------+---------+---------+---------+---------+ 274
OVRM1_0200_C05.b : TGAAGGGGACAGAGGATGAGCTGGACAAATACTCCGAGAACCTGAAGGACGCGCAGGAAA
OVRM1_0094_A06.b : TGAAGGGGACAGAGGATGAGCTGGACAAATACTCCGAGAACCTGAAGGACGCGCAGGAAA
UTR01_0062_E04.b : TGAAGGGGACAGAGGATGAGCTGGACAAATACTCCGAGAACCTGAAGGACGCGCAGGAAA
SKNB1_0063_C10.b : TGAAGGGGACAGAGGATGAGCTGGACAAATACTCCGAGAACCTGAAGGACGCGCAGGAAA
20080515C-000637 : AGCTGGAGCTGAGCGAGAAGAAAGCCTCCGACGCCGAAGGGGATGTAGCAGCTCTCAATC
---------+---------+---------+---------+---------+---------+ 334
OVRM1_0200_C05.b : AGCTGGAGCTGAGCGAGAAGAAAGCCTCCGACGCCGAAGGGGATGTAGCAGCTCTCAATC
OVRM1_0094_A06.b : AGCTGGAGTTGAGCGAGAAGAAAGCCTCCGACGCCGAAGGGGATGTAGCAGCTCTCAATC
UTR01_0062_E04.b : AGCTGGAGCTGAGCGAGAAGAAAGCCTCCGACGCCGAAGGGGATGTAGCAGCTCTCAATC
SKNB1_0063_C10.b : AGCTGGAGCTGAGCGAGAAGAAAGCCTCCGACGCCGAAGGGGATGTAGCAGCTCTCAATC
20080515C-000637 : GGCGCATCCAACTCGTTGAGGAGGAGTTGGACAGGGCTCAGGAACGACTGGCCACAGCCC
---------+---------+---------+---------+---------+---------+ 394
OVRM1_0200_C05.b : GGCGCATCCAACTCGTTGAGGAGGAGTTGGACAGGGCTCAGGAACGACTGGCCACAGCCC
OVRM1_0094_A06.b : GGCGCATCCAACTCGTTGAGGAGGAGTTGGACAGGGCTCAGGAACGACTGGCCACAGCCC
UTR01_0062_E04.b : GGCGCATCCAACTCGTTGAGGAGGAGTTGGACAGGGCTCAGGAACGACTGGCCACAGCCC
SKNB1_0063_C10.b : GGCGCATCCAACTCGTTGAGGAGGAGTTGGACAGGGCTCAGGAACGACTGGCCACAGCCC
20080515C-000637 : TGCAGAAGCTTGAGGAGGCAGAAAAGGCTGCAGATGAGAGCGAGAGAGGAATGAAGGTGA
---------+---------+---------+---------+---------+---------+ 454
OVRM1_0200_C05.b : TGCAGAAGCTTGAGGAGGCAGAAAAGGCTGCAGATGAGAGCGAGAGAGGAATGAAGGTGA
OVRM1_0094_A06.b : TGCAGAAGCTTGAGGAGGCAGAAAAGGCTGCAGATGAGAGCGAGAGAGGAATGAAGGTGA
UTR01_0062_E04.b : TGCAGAAGCTTGAGGAGGCAGAAAAGGCTGCAGATGAGAGCGAGAGAGGAATGAAGGTGA
SKNB1_0063_C10.b : TGCAGAAGCTTGAGGAGGCAGAAAAGGCTGCAGATGAGAGCGAGAGAGGAATGAAGGTGA
20080515C-000637 : TAGAAAACCGGGCCATGAAAGATGAGGAGAAGATGGAGATTCAGGAGATGCAGCTCAAAG
---------+---------+---------+---------+---------+---------+ 514
OVRM1_0200_C05.b : TAGAAAACCGGGCCATGAAAGATGAGGAGAAGATGGAGATTCAGGAGATGCAGCTCAAAG
OVRM1_0094_A06.b : TAGAAAACCGGGCCATGAAAGATGAGGAGAAGATGGAGATTCGGGAGATGCAGCTCAAAG
UTR01_0062_E04.b : TAGAAAACCGGGCCATGAAAGATGAGGAGAAGATGGAGATTCAGGAGATGCAGCTCAAAG
SKNB1_0063_C10.b : TAGAAAACCGGGCCATGAAAGATGAGGAGAAGATGGAGATTCAGGAGATGCAGCTCAAAG
20080515C-000637 : AGGCCAAGCACATTGCCGAGGAGGCCGACCGCAAATACGAGGAGGTAGCTCGTAAGTTGG
---------+---------+---------+---------+---------+---------+ 574
OVRM1_0200_C05.b : AGGCCAAGCACATTGCCGAGGAGGCCGACCGCAAATACGAGGAGGTAGCTCGTAAGTTGG
OVRM1_0094_A06.b : AGGCCAAGCACATTGCCGAGGAGGCCGACCGCAAATACGAGGAGGTAGCTCGTAAGTTGG
UTR01_0062_E04.b : AGGCCAAGCACATTGCCGAGGAGGCCGACCGCAAATACGAGGAGGTAGCTCGTAAGTTGG
SKNB1_0063_C10.b : AGGCCAAGCACATTGCCGAGGAGGCCGACCGCAAATACGAGGAGGTAGCTCGTAAGTTGG
20080515C-000637 : TCATCCTGGAGGGCGAGCTGGAGAGGGCAGAGGAGCGTGCCGAGGTGTCTGAACTAAAAT
---------+---------+---------+---------+---------+---------+ 634
OVRM1_0200_C05.b : TCATCCTGGAGGGCGAGCTGGAGAGGGCAGAGGAGCGTGCCGAGGTGTCTGAACTAAAAT
OVRM1_0094_A06.b : TCATCCTGGAGGGCGAGCTGGAGAGGGCAGAGGAGCGTGCCGAGGTGTCTGAACTAAAAT
UTR01_0062_E04.b : TCATCCTGGAGGGCGAGCTGGAGAGGGCAGAGGAGCGTGCCGAGGTGTCTGAACTAAAAT
SKNB1_0063_C10.b : TCATCCTGGAGGGCGAGCTGGAGAGGGCAGAGGAGCGTGCCGAGGTGTCTGAACTAAAAT
20080515C-000637 : GTGGTGACCTGGAAGAAGAACTCAAGAATGTCACCAACAACCTGAAGTCGCTAGAGGCTG
---------+---------+---------+---------+---------+---------+ 694
OVRM1_0200_C05.b : GTGGTGACCTGGAAGAAGAACTCAAGAATGTCACCAACAACCTGAAGTCGCTAGAGGCTG
OVRM1_0094_A06.b : GTGGTGACCTGGAAGAAGAACTCTAGAATGTCACCAACAACCTGAAGTCGCTAGAGGCTG
UTR01_0062_E04.b : GTGGTGACCTGGAAGAAGAACTCAAGAATGTCACCAACAACCTGAAGTCGCTAGAGGCTG
SKNB1_0063_C10.b : GTGGTGACCTGGAAGAAGAACTCAAGAATGTCACCAACAACCTGAAGTCGCTAGAGGCTG
20080515C-000637 : *CATCTGAAAAGTATTCTGAAAAGGAGGATAAATATGAAGAAGAGATTAAACTTCTGTCT
---------+---------+---------+---------+---------+---------+ 753
OVRM1_0200_C05.b : GCATCTGAAA*GTATTCTGAAAAGGAGGATAAATATGAn
OVRM1_0094_A06.b : *CATCTGAAAAGTATTCTGAAAAGGAGGATAAATACGAAGAAGAGATTCAACTTCTGTCT
UTR01_0062_E04.b : *CATCTGAAAAGTATTCTGAAAAGGAGGATAAATATGAAGAAGAGATTAAACTTCTGTCT
SKNB1_0063_C10.b : *CATCTGAAAAGTATTCTGAAAAGGAGGATAAATATGAAGAAGAGATTAAACTTCTGTCT
20080515C-000637 : GACAAACTGAAAGAGGCTGAGACCCGTGCTGAATTTGCAGAGAGAACAGTTGCAAAACTG
---------+---------+---------+---------+---------+---------+ 813
OVRM1_0200_C05.b :
OVRM1_0094_A06.b : GACAAACTGAAAGAGGCT
UTR01_0062_E04.b : GACAAACTGAAAGAGGCTGAGACCCGTGCTGAATTTGCAGAGAGAACAGTTGCAAAACTG
SKNB1_0063_C10.b : GACAAACTGAAAGAGGCTGAGACCCGTGCTGAATTTGCAGAGAGAACAGTTGCAAAACTG
20080515C-000637 : GAAAAGACCATCGATGACCTGGAAGAAAAACTTGCCCAGGCCAAAGAAGAAAACGTGGGC
---------+---------+---------+---------+---------+---------+ 873
OVRM1_0200_C05.b :
OVRM1_0094_A06.b :
UTR01_0062_E04.b : GAAAAGACCATCGATGACCTGGAAGAAAAACTTGTCCAGGCCAAAGAAAAAAACGTGGGC
SKNB1_0063_C10.b : GAAAAGACCATCGATGACCTGNAAGAAAAACTTGCCCAGGCCAAAGAAGAGAACGTGGGC
20080515C-000637 : TTACATCAAACACTGGATCAGACACTAAACGAACTAAACTGTAT*ATAACCAAAACAAGA
---------+---------+---------+---------+---------+---------+ 932
OVRM1_0200_C05.b :
OVRM1_0094_A06.b :
UTR01_0062_E04.b : TTTACTCAAACACTGGAATCGACACTAAACGACCTAAACTGTATTATAACCAAAACAAAA
SKNB1_0063_C10.b : TTACATCAGACACTGGATCAGACACTAAACGAACTAAACTGTAT*ATAACCCNAAC*AGA
20080515C-000637 : AGAGTCTCGTTCCATCAAAAACTTCCCAAGCTACCTGGTTTT**CTCTTCTCTTGT*AAA
---------+---------+---------+---------+---------+---------+ 989
OVRM1_0200_C05.b :
OVRM1_0094_A06.b :
UTR01_0062_E04.b : AAAATTTCGTTCCCTCCAAAACTTCCCAAGCTACCTTGTTTTTCCCCTTCTCTTGTAAAA
SKNB1_0063_C10.b : AGAGTCTCGTTCCATCAGAAACT*CCNGAGCTACGTGGTTTT**CTCTTCTCNTGT*AAG
20080515C-000637 : AAGTT*CCTTTTGTTATTTGCCCCCTTTTGCTTT*GCTGGAAAT**GGCAAG*CAAAATT
---------+---------+---------+---------+---------+---------+ 1044
OVRM1_0200_C05.b :
OVRM1_0094_A06.b :
UTR01_0062_E04.b : AAGTTTTCTTTTGTTTTTTGCCCCCTTTTCCTTTTGCCTGAAAAAGGGCAAGGCAAAATT
SKNB1_0063_C10.b : AAGTT*CCTTTTGTTAT**GCCTC**TTTGCTTT*GCTGGAAAT**GTCAAG*CAAA**T
20080515C-000637 : TATAAATACCTGTGAACCCAATATTTTTG***T*ATCAAAAAAAAACTTTTTTAAACCCC
---------+---------+---------+---------+---------+---------+ 1100
OVRM1_0200_C05.b :
OVRM1_0094_A06.b :
UTR01_0062_E04.b : TATAAATACCCGTGAACCCAATATTTTTTTTGTTATCAAAAAAAAACTTTTTTAAACCCC
SKNB1_0063_C10.b : TATGAATACCTG***ACCAAATATTTTGG*****ATCCGAAAAG**CTTGGAGCA**CCG
20080515C-000637 : CCAAGTCTATACCTTCCTTTTTTTCCTTTTCCCTTTTTTTTTTTTCCAAGGGTGGGGCCC
---------+---------+---------+---------+---------+---------+ 1160
OVRM1_0200_C05.b :
OVRM1_0094_A06.b :
UTR01_0062_E04.b : CCAAGTTTAAAAATTC*TTTTTTTCCTTTTCCCTTTTTTTTTTTTCCAAGGGTGGGGCCC
SKNB1_0063_C10.b : TTAAATCTATTCCTTCCTTTTTTTCAGTGGCACCAGCTTTTtccgcctcattttaaccct
20080515C-000637 : CCCCCCCCCTTTTTTTTTTCTCCCACCCTCTCTTTTTTTTTTTTTTT.............
---------+---------+---------+---------+---------+---------+ 1207
OVRM1_0200_C05.b :
OVRM1_0094_A06.b :
UTR01_0062_E04.b : CCCCCCCCCTTTTTTTTTTCTCCCACCCTCTCTTTTTTTTTTTTTTT
SKNB1_0063_C10.b : aaatgctttattcccaaagtaggcggggtaattcctattggcaatcctcctaaaactggg
20080515C-000637 : ............................................................
---------+---------+---------+---------+---------+---------+ 1207
OVRM1_0200_C05.b :
OVRM1_0094_A06.b :
UTR01_0062_E04.b :
SKNB1_0063_C10.b : gcttttgttcccgggaaataacaaccccccctttaaa
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