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[Overview] [RefSeq] [Assembly & SNP] [Alignment]

Assembly Name:  20080515C-001912

Length: 1,005

Sequence:  [FASTA format sequence]
CAGCGCGATG GCGGCGGCTC CTTCAGGCCC CTGAAGGGGG ATTTAGGCCC GGGAGATCCG
AGTCCATCCG CGGCGGGGAG AGGGCGAACG GGGTTGGCGG AGGCCGCCAT GGAGCTCAGA
GTGGGGAACA GGTACCGGCT GGGCCGGAAG ATCGGCAGCG GGTCCTTCGG AGACATCTAT
CTCGGTACGG ACATTGCTGC GGGAGAAGAA GTTGCCATCA AGTTTGAATG TGTCAAAACT
AAGCACCCTC AGCTCCACAT CGAGAGCAAA ATCTACAAGA TGATGCAGGG AGGAGTGGGC
ATCCCCACCA TCCGGTGGTG TGGGGCCGAG GGCGACTACA ACGTCATGGT CATGGAGCTG
CTGGGGCCCA GCCTGGAGGA CCTCTTCAAC TTCTGCTCCA GGAAGTTCAG CCTCAAGACC
GTCCTGCTGC TCGCTGACCA GATGATCAGC CGCATCGAGT ACATCCACTC GAAGAACTTC
ATCCACCGGG ACGTGAAGCC GGACAACTTC CTCATGGGGC TGGGCAAGAA GGGCAACCTG
GTGTACATCA TCGACTTCGG GCTGGCCAAG AAGTACCGGG ACGCCCGCAC CCACCAGCAC
ATCCCCTACC GCGAGAACAA GAACCTCACC GGCACCGCGC GCTACGCCTC CATCAACACG
CACCTCGGCA TCGAACAATC TCGGAGGGAC GACCTGGAAT CTCTGGGCTA CGTGCTCATG
TACTTCAACC TGGGGCTCGC TGCCCTGGCA GGGCCTGAAG GCGGCCATCC AGCGCCAGAA
GTACGAGCGC ATCAGCGAGA AGAAGATGTC CACGCCCATC GAGGTGCTCT GNCAAGGCTA
CCCCTCCGAG TTCGCCACGT ACCTGAACTT CTGCCGTTCC CTGCGCTTTG ATGACAAGCC
TGACTACTCG TACCTGAAGC AGCTCTTCAG GAACCTGTTC ACCGCCAGGG CTTCTCCTAC
GACTACGTTC TTTAATGGAC ATGCTCAATT TTGGACCCCG CCGGG

SNP mapping information

SNP ID	Rel.	Chr.	Location (cM)

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Assembly Overview:      TOP

Change score limit to  

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BLAST on RefSeq (Human):      TOP

		Locus	Definition	Score	E value	FL
		CSNK1D	casein kinase 1, delta isoform 1	421	e-154	O
		CSNK1D	casein kinase 1, delta isoform 2	421	e-154	O
		CSNK1E	casein kinase 1 epsilon	410	e-151	O
		CSNK1E	casein kinase 1 epsilon	410	e-151	O
		CSNK1A1	casein kinase 1, alpha 1 isoform 2	333	e-118	O
		CSNK1A1	casein kinase 1, alpha 1 isoform 1	318	e-114	O
		CSNK1A1L	casein kinase 1, alpha 1-like	317	e-113	O
		CSNK1G3	casein kinase 1, gamma 3 isoform 4	256	1e-86	O
		CSNK1G3	casein kinase 1, gamma 3 isoform 1	256	1e-86	O
		CSNK1G1	casein kinase 1, gamma 1	254	1e-86	O

BLAST on RefSeq (Mouse):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Dog):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Cattle):      TOP

		Locus	Definition	Score	E value	FL

BLAST on RefSeq (Pig):      TOP

		Locus	Definition	Score	E value	FL

Alignment:      TOP

20080515C-001912 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 0
PBL01_0024_F10.b :                    aaacaxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
PTG01_0087_C05.b : nncccgcacttttnnnggagtxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx


20080515C-001912 : .......CAGCGCGATGGCGGCGGCTCCTTCAGGCCCCTGAAGGGGGATTTAGGCCCGGG
                   ---------+---------+---------+---------+---------+---------+ 53
PBL01_0024_F10.b : xxxxxxxCAGCGCGATGGCGGCGGCTCCTTCAGGCCCCTGAAGGGGGATTTAGGCCCGGG
PTG01_0087_C05.b : xxxxxxxxxGCGCGATGGCGGCGGCTCCTTCAGGCCCCTGAAGGGGGATTTAGGCCCGGG


20080515C-001912 : AGATCCGAGTCCATCCGCGGCGGGGAGAGGGCGAACGGGGTTGGCGGAGGCCGCCATGGA
                   ---------+---------+---------+---------+---------+---------+ 113
PBL01_0024_F10.b : AGATCCGAGTCCATCCGCGGCGGGGAGAGGGCGAACGGGGTTGGCGGAGGCCGCCATGGA
PTG01_0087_C05.b : AGATCCGAGTCCATCCGCGGCGGGGAGAGGGCGAACGGGGTTGGCGGAGGCCGCCATGGA


20080515C-001912 : GCTCAGAGTGGGGAACAGGTACCGGCTGGGCCGGAAGATCGGCAGCGGGTCCTTCGGAGA
                   ---------+---------+---------+---------+---------+---------+ 173
PBL01_0024_F10.b : GCTCAGAGTGGGGAACAGGTACCGGCTGGGCCGGAAGATCGGCAGCGGGTCCTTCGGAGA
PTG01_0087_C05.b : GCTCAGAGTGGGGAACAGGTACCGGCTGGGCCGGAAGATCGGCAGCGGGTCCTTCGGAGA


20080515C-001912 : CATCTATCTCGGTACGGACATTGCTGCGGGAGAAGAAGTTGCCATCAAGTTTGAATGTGT
                   ---------+---------+---------+---------+---------+---------+ 233
PBL01_0024_F10.b : CATCTATCTCGGTACGGACATTGCTGCGGGAGAAGAAGTTGCCATCAAGCTTGAATGTGT
PTG01_0087_C05.b : CATCTATCTCGGTACGGACATTGCTGCGGGAGAAGAAGTTGCCATCAAGTTTGAATGTGT


20080515C-001912 : CAAAACTAAGCACCCTCAGCTCCACATCGAGAGCAAAATCTACAAGATGATGCAGGGAGG
                   ---------+---------+---------+---------+---------+---------+ 293
PBL01_0024_F10.b : CAAAACTAAGCACCCTCAGCTCCACATCGAGAGCAAAATCTACAAGATGATGCAGGGAGG
PTG01_0087_C05.b : CAAAACTAAGCACCCTCAGCTCCACATCGAGAGCAAAATCTACAAGATGATGCAGGGAGG


20080515C-001912 : AGTGGGCATCCCCACCATCCGGTGGTGTGGGGCCGAGGGCGACTACAACGTCATGGTCAT
                   ---------+---------+---------+---------+---------+---------+ 353
PBL01_0024_F10.b : AGTGGGCATCCCCACCATCCGGTGGTGTGGGGCCGAGGGCGACTACAACGTCATGGTCAT
PTG01_0087_C05.b : AGTGGGCATCCCCACCATCCGGTGGTGTGGGGCCGAGGGCGACTACAACGTCATGGTCAT


20080515C-001912 : GGAGCTGCTGGGGCCCAGCCTGGAGGACCTCTTCAACTTCTGCTCCAGGAAGTTCAGCCT
                   ---------+---------+---------+---------+---------+---------+ 413
PBL01_0024_F10.b : GGAGCTGCTGGGGCCCAGCCTGGAGGACCTCTTCAACTTCTGCTCCAGGAAGTTCAGCCT
PTG01_0087_C05.b : GGAGCTGCTGGGGCCCAGCCTGGGGGACCTCTTCAACTTCTGCTCCAGGAAGTTCAGCCT


20080515C-001912 : CAAGACCGTCCTGCTGCTCGCTGACCAGATGATCAGCCGCATCGAGTACATCCACTCGAA
                   ---------+---------+---------+---------+---------+---------+ 473
PBL01_0024_F10.b : CAAGACCGTCCTGCTGCTCGCTGACCAGATGATCAGCCGCATCGAGTACATCCACTCGAA
PTG01_0087_C05.b : CAAGACCGTCCTGCTGCTCGCTGACCAGATGATCAGCCGCATCGAGTACATCCACTCGAA


20080515C-001912 : GAACTTCATCCACCGGGACGTGAAGCCGGACAACTTCCTCATGGGGCTGGGCAAGAAGGG
                   ---------+---------+---------+---------+---------+---------+ 533
PBL01_0024_F10.b : GAACTTCATCCACCGGGACGTGAAGCCGGACAACTTCCTCATGGGGCTGGGCAAGAAGGG
PTG01_0087_C05.b : GAACTTCATCCACCGGGACGTGAAGCCGGACAACTTCCTCATGGGGCTGGGCAAGAAGGG


20080515C-001912 : CAACCTGGTGTACATCATCGACTTCGGGCTGGCCAAGAAGTACCGGGACGCCCGCACCCA
                   ---------+---------+---------+---------+---------+---------+ 593
PBL01_0024_F10.b : CAACCTGGTGTACATCATCGACTTCGGGCTGGCCAAGAAGTACCGGGACGCCCGCACCCA
PTG01_0087_C05.b : CAACCTGGTGTACATCATCGACTTCGGGCTGGCCAAGAAGTACCGGGACGCCCGCACCCA


20080515C-001912 : CCAGCACATCCCCTACCGCGAGAACAAGAACCTCACCGGCACCGCGCGCTACGCCTCCAT
                   ---------+---------+---------+---------+---------+---------+ 653
PBL01_0024_F10.b : CCAGCACATCCCCTACCGCGAGAACAAGAACCTCACCGGCACCGCGCGCTACGCCTCCAT
PTG01_0087_C05.b : CCAGCACATCCCCTACCGCGAGAACAAGAACCTCACNGGCACCGCGCGCTACGCCTCCAT


20080515C-001912 : CAACACGCACCTCGGCATCGAACAATCTCGGAGGGACGACCTGGAATCTCTGGGCTACGT
                   ---------+---------+---------+---------+---------+---------+ 713
PBL01_0024_F10.b : CAACACGCACCTCGGCATCGAACAATCTCGGAGGGACGACCTGGAATCTCTGGGCTACGT
PTG01_0087_C05.b : CAACACGCACCTCGGCATCGAACAATCTCGGAGGGACGACCTGNAATCTCTGGGCTACGT


20080515C-001912 : GCTCATGTACTTCAACCTGGGGCTCGCTGCCCTGGCAGGGCCTGAAGGCGGCCATCCAGC
                   ---------+---------+---------+---------+---------+---------+ 773
PBL01_0024_F10.b : GCTCATGTACTTCAACCTGNG*CTCGCTGCCCTGGCAGGGCCTGAAGGCGGCCATCCAGC
PTG01_0087_C05.b : GCTCATGTACTTCAACCTGGGGCTC*CTGCCCTGGCAGGCCCTGAAGGCGGCCcccaacc


20080515C-001912 : GCCAGAAGTACGAGCGCATCAGCGAGAAGAAGATGTCCACGCCCATCGAGGTGCTCTGNC
                   ---------+---------+---------+---------+---------+---------+ 833
PBL01_0024_F10.b : GCCAGAAGTACGAGCGCATCAGCGAGAAGAAGATGTCCACGCCCATCGAGGTGCTCTGNC
PTG01_0087_C05.b : gccgaagtccgacgcctcaccaagaaaaaatgtcccccccttcgggtggtctgcaaaggt


20080515C-001912 : AAGGCTACCCCTCCGAGTTCGCCACGTACCTGAACTTCTGCCGTTCCCTGCGCTTTGATG
                   ---------+---------+---------+---------+---------+---------+ 893
PBL01_0024_F10.b : AAGGCTACCCCTCCGAGTTCGCCACGTACCTGAACTTCTGCCGTTCCCTGCGCTTTGATG
PTG01_0087_C05.b : accccctccagtcccccggtacctaaattccggcgttccccgcctttgatgacaacctga


20080515C-001912 : ACAAGCCTGACTACTCGTACCTGAAGCAGCTCTTCAGGAACCTGTTCACCGCCAGGGCTT
                   ---------+---------+---------+---------+---------+---------+ 953
PBL01_0024_F10.b : ACAAGCCTGACTACTCGTACCTGAAGCAGCTCTTCAGGAACCTGTTCACCGCCAGGGCTT
PTG01_0087_C05.b : atttctcctactgaggaatccttcggaaccgttcccccccagggttttcctaaaaatccc


20080515C-001912 : CTCCTACGACTACGTTCTTTAATGGACATGCTCAATTTTGGACCCCGCCGGG........
                   ---------+---------+---------+---------+---------+---------+ 1005
PBL01_0024_F10.b : CTCCTACGACTACGTTCTTTAATGGACATGCTCAATTTTGGACCCCGCCGGGaacccaca
PTG01_0087_C05.b : tttttaggaaaatgcccaatttggaccccccggggcccaaaaacccaaagggaccccggg


20080515C-001912 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1005
PBL01_0024_F10.b : actccaaacggaaccccgggaccaaaggagcgctgaaaattccgcaacccaaccccccgg
PTG01_0087_C05.b : acaaaaaaaagcttaaaaatcccgaaaccaaccccggggccccccccgggtttggggggg


20080515C-001912 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1005
PBL01_0024_F10.b : cctccttcaagggctaaggcggctgaggggaccagaagggggcctccaccccttacctta
PTG01_0087_C05.b : aggggaccagaggggggcctcccccccttccttttttaacagggaaaaccccccccccct


20080515C-001912 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1005
PBL01_0024_F10.b : cttacacgggaaacctttcccgccctgttcgcttgaaaaacgcaaaggatatggttgccc
PTG01_0087_C05.b : ttccgagaaaaaaaaaaaaattttttttttccccggcccccttttatttcccctcccccg


20080515C-001912 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1005
PBL01_0024_F10.b : cgggccccctaatatctcttcgatcttgggggaaaaaccccgcgttccccgaaaaattct
PTG01_0087_C05.b : ggggaaaaaacccccgcccccccaaaaatttttttccaccccaaaattttccccccccaa


20080515C-001912 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1005
PBL01_0024_F10.b : ttaaacccgcgatattngccccttaaaacccgagttcgggggtgccccctctccccctcc
PTG01_0087_C05.b : aaaaaaatagcggggggggccccccccccccccccgaaaacctttttggagggggcgcct


20080515C-001912 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1005
PBL01_0024_F10.b : ggaaacctcttgggaaattggacatttgttagacccttaaaaatttcggttcccccccgc
PTG01_0087_C05.b : cttttttccccgcgaaaaaaaccgcggcgc                             


20080515C-001912 : ............................................................
                   ---------+---------+---------+---------+---------+---------+ 1005
PBL01_0024_F10.b : gcgaaaacaca                                                
PTG01_0087_C05.b :