[Overview] [RefSeq] [Assembly & SNP] [Alignment]
Assembly Name: 20080515C-001930
Length:
1,005
Sequence:
[FASTA format sequence]
GGAATCTACA GCAGCCCAAC TCAGGCAGAA GAAGACAGAC AGGCCAACAG GTTCAGACAG
CCTGCTCGCC GCTCCACGCC CCCCACTGCT CTCCTGCCCC AGCGCCGAGA TGGATACCCC
TGTTAGGGAC CTAGACAAGT TCATCGAAGA CCACCTCCTG CCAAACACAT GTTTCCGAAC
GCAGGTCAAG GAAGCCATCG ACATCGTCTG CGGTTTCCTG AAGGAGAGGT GCTTCCAGGG
GACCGCCGAC CCTGTTCGCG TCTCCAAAGT TGTGAAGGGT GGCTCCTCGG GCAAAGGCAC
GACCCTCAGG GGCCGATCAG ATGCTGACCT CGTCGTCTTC CTCACCAAGC TCACAAGTTT
TGAGGATCAG CTTCAGCTCC GAGAAGAATT CATCCAGGAA ATTCGGAGAC AGCTGGAAGC
CTGTCAAAAA GAACAAAAGT TTAAAGTGAC GTTTGAGGTC CAGACTCCAC GACAGGAGAA
CCCCCGTGCC CTCAGCTTCG TGCTCAGCTC CCCCCAGCTC CAGCAGGAGG TGGAGTTTGA
TGTCCTGCCC GCCTTTGATG CCCTGGGTCA GTGGACCCCG GGCTACAAAC CCAACCCGGA
AATCTACGTC CAGCTTATCA AAGAGTGCAA GTCCCTAGGG AAAGAGGGCG AGTTTTCCAC
CTGCTTCACG GAGCTGCAGC GAGACTTCCT GAGGAACCGA CCAACCAAGC TGAAGAGCCT
CATCCGCCTT GTCAAGCACT GGTACCAGAC GTGTAAGAAG CCTCATGGAA ATAAACTGCC
CCCACAGTAT GCCCTGGAGC TCCTGACAGT CTATGCATGG GAGCAAGGAA GCGGGAAAAC
AGATTTTAGC ACAGCTCAGG GATTTCAGAC TGTTTTGGAA TTAGTCCTAA AGCATAAGAA
GCTTTGCATC TTCTGGGAAG CATATTATAA CTTTTAAAAC CCTGTCGTTG GACGATATCT
GACTGAGCAA CTCAAGAAAC CCAGGCCTGT GATTCTGGAC CCGGC
SNP mapping information
| SNP ID | Rel. | Chr. | Location (cM) |
|---|
| Locus | Definition | Score | E value | FL | ||
|---|---|---|---|---|---|---|
 |
 | OAS1 | 2',5'-oligoadenylate synthetase 1 isoform 1 | 432 | e-121 | O |
|
| OAS1 | 2',5'-oligoadenylate synthetase 1 isoform 3 | 432 | e-121 | O |
|
| OAS1 | 2',5'-oligoadenylate synthetase 1 isoform 2 | 432 | e-121 | O |
|
| OAS3 | 2'-5'oligoadenylate synthetase 3 | 315 | 3e-86 | |
|
| OAS2 | 2'-5'-oligoadenylate synthetase 2 isoform 2 | 287 | 1e-77 | |
|
| OAS2 | 2'-5'-oligoadenylate synthetase 2 isoform 1 | 287 | 1e-77 | |
|
| OASL | 2'-5'-oligoadenylate synthetase-like isoform a | 197 | 9e-51 | O |
|
| OASL | 2'-5'-oligoadenylate synthetase-like isoform b | 125 | 4e-29 | O |
|
| OAS2 | 2'-5'-oligoadenylate synthetase 2 isoform 3 | 59.3 | 5e-09 | O |
| Locus | Definition | Score | E value | FL |
|---|
| Locus | Definition | Score | E value | FL |
|---|
| Locus | Definition | Score | E value | FL |
|---|
| Locus | Definition | Score | E value | FL |
|---|
|
20080515C-001930 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
TES01_0075_B06.b :
AMP01_0025_C08.b : attttaccgaccctaaxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
THY01_0057_B01.b :
20080515C-001930 : ............................................................
---------+---------+---------+---------+---------+---------+ 0
TES01_0075_B06.b :
AMP01_0025_C08.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
THY01_0057_B01.b : tttttggatgaacxxxxxxxxxxxxxxxxxxxxxxxxx
20080515C-001930 : .....................GGAATCTACAGCAGCCCAACTCAGGCAGAAGAAGACAGA
---------+---------+---------+---------+---------+---------+ 39
TES01_0075_B06.b : nttggcggtggctctgGGAATCTACAGCAGCCCAACTCAGGCAGAAGAAGACAGA
AMP01_0025_C08.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxaggcaGAAGAAGACAGA
THY01_0057_B01.b : xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGAAGAAGACAGA
20080515C-001930 : CAGGCCAACAGGTTCAGACAGCCTGCTCGCCGCTCCACGCCCCCCACTGCTCTCCTGCCC
---------+---------+---------+---------+---------+---------+ 99
TES01_0075_B06.b : CAGGCCAACAGGTTCAGATAGCCTGCTCGCCGCTCCACGCCCCCCACTGCTCTCCTGCCC
AMP01_0025_C08.b : CAGGCCAACAGGTTCAGACAGCCTGCTCGCCGCTCCACGCCCCCCACTGCTCTCCTGCCC
THY01_0057_B01.b : CAGGCCAACAGGTTCAGACAGCCTGCTCGCCGCTCCACGCCCCCCACTGCTCTCCTGCCC
20080515C-001930 : CAGCGCCGAGATGGATACCCCTGTTAGGGACCTAGACAAGTTCATCGAAGACCACCTCCT
---------+---------+---------+---------+---------+---------+ 159
TES01_0075_B06.b : CAGCGCCGAGATGGATACCCCTGTTAGGGACCTAGACAAGTTCATCGAAGACCACCTCCT
AMP01_0025_C08.b : CAGCGCCGAGATGGATACCCCTGTTAGGGACCTAGACAAGTTCATCGAAGACCACCTCCT
THY01_0057_B01.b : CAGCGCCGAGATGGATACCCCTGTTAGGGACCTAGACAAGTTCATCGAAGACCACCTCCT
20080515C-001930 : GCCAAACACATGTTTCCGAACGCAGGTCAAGGAAGCCATCGACATCGTCTGCGGTTTCCT
---------+---------+---------+---------+---------+---------+ 219
TES01_0075_B06.b : GCCAAACACATGTTTCCGAACGCAGGTCAAGGAAGCCATCGACATCGTCTGCGGTTTCCT
AMP01_0025_C08.b : GCCAAACACATGTTTCCGAACGCAGGTCAAGGAAGCCATCGACATCGTCTGCGGTTTCCT
THY01_0057_B01.b : GCCAAACACATGTTTCCGAACGCAGGTCAAGGAAGCCATCGACATCGTCTGCGGTTTCCT
20080515C-001930 : GAAGGAGAGGTGCTTCCAGGGGACCGCCGACCCTGTTCGCGTCTCCAAAGTTGTGAAGGG
---------+---------+---------+---------+---------+---------+ 279
TES01_0075_B06.b : GAAGGAGAGGTACTTCCAGGGGACCGCCGACCCTGTTCGCGTCTCCAAAGTTGTGAAGGG
AMP01_0025_C08.b : GAAGGAGAGGTGCTTCCAGGGGACCGCCGACCCTGTTCGCGTCTCCAAAGTTGTGAAGGG
THY01_0057_B01.b : GAAGGAGAGGTGCTTCCAGGGGACCGCCGACCCTGTTCGCGTCTCCAAAGTTGTGAAGGG
20080515C-001930 : TGGCTCCTCGGGCAAAGGCACGACCCTCAGGGGCCGATCAGATGCTGACCTCGTCGTCTT
---------+---------+---------+---------+---------+---------+ 339
TES01_0075_B06.b : TGGCTCCTCAGGCAAAGGCACGACCCTCAGGGGCCGATCAGATGCTGACCTCGTCGTCTT
AMP01_0025_C08.b : TGGCTCCTCGGGCAAAGGCACGACCCTCAGGGGCCGATCAGATGCTGACCTCGTCGTCTT
THY01_0057_B01.b : TGGCTCCTCGGGCAAGGGCACGACCCTCAGGGGCCGATCAGATGCTGACCTCGTCGTCTT
20080515C-001930 : CCTCACCAAGCTCACAAGTTTTGAGGATCAGCTTCAGCTCCGAGAAGAATTCATCCAGGA
---------+---------+---------+---------+---------+---------+ 399
TES01_0075_B06.b : CCTCACCAAGCTCACAAGTTTTGAGGATCAGCTTCAGCTCCGAGAAGAATTCATCCAGGA
AMP01_0025_C08.b : CCTCACCAAGCTCACAAGTTTTGAGGATCAGCTTCAGCTCCGAGAAGAATTCATCCAGGA
THY01_0057_B01.b : CCTCACCAAGCTCACAAGTTTTGAGGATCAGCTTCAGCTCCGAGAAGAATTCATCCAGGA
20080515C-001930 : AATTCGGAGACAGCTGGAAGCCTGTCAAAAAGAACAAAAGTTTAAAGTGACGTTTGAGGT
---------+---------+---------+---------+---------+---------+ 459
TES01_0075_B06.b : AATTCGGAGACAGCTGGAAGCCTGTCAAAAAGAACAAAAGTTTAAAGTGACGTTTGAGGT
AMP01_0025_C08.b : AATTCGGAGACAGCTGGAAGCCTGTCAAAAAGAACAAAAGTTTAAAGTGACGTTTGAGGT
THY01_0057_B01.b : AATTCGGAGACAGCTGGAAGCCTGTCAAAAAGAACAAAAGTTTAAAGTGACGTTTGAGGT
20080515C-001930 : CCAGACTCCACGACAGGAGAACCCCCGTGCCCTCAGCTTCGTGCTCAGCTCCCCCCAGCT
---------+---------+---------+---------+---------+---------+ 519
TES01_0075_B06.b : CCAGACTCCACGACAGGAGAACCCCCGTGCCCTCAGCTTCGTGCTCAGCTCCCCCCAGCT
AMP01_0025_C08.b : CCAGACTCCACGACAGGAGAACCCCCGTGCCCTCAGCTTCGTGCTCAGCTCCCCCCAGCT
THY01_0057_B01.b : CCAGACTCCACGACAGGAGAACCCCCGTGCCCTCAGCTTCGTGCTCAGCTCCCCCCAGCT
20080515C-001930 : CCAGCAGGAGGTGGAGTTTGATGTCCTGCCCGCCTTTGATGCCCTGGGTCAGTGGACCCC
---------+---------+---------+---------+---------+---------+ 579
TES01_0075_B06.b : CCAGCAGGAGGTGGAGTTTGATGTCCTGCCCGCCTTTGATGCCCTGGGTCAGTGGACCCC
AMP01_0025_C08.b : CCAGCAGGAGGTGGAGTTTGATGTCCTGCCCGCCTTTGATGCCCTGGGTCAGTGGACCCC
THY01_0057_B01.b : CCAGCAGGAGGTGGAGTTTGATGTCCTGCCCGCCTTTGATGCCCTGGGTCAGTGGACCCC
20080515C-001930 : GGGCTACAAACCCAACCCGGAAATCTACGTCCAGCTTATCAAAGAGTGCAAGTCCCTAGG
---------+---------+---------+---------+---------+---------+ 639
TES01_0075_B06.b : GGGCTACAAACCCAACCCGGAAATCTACGTCCAGCTTATCAAAGAGTGCAAGTCCCTAGG
AMP01_0025_C08.b : GGGCTACAAACCCAACCCGGAAATCTACGTCCAGCTTATCAAAGAGTGCAAGTCCCTAGG
THY01_0057_B01.b : GGGCTACAAACCCAACCCGGAAATCTACGTCCAGCTTATCAAAGAGTGCAAGTCCCTAGG
20080515C-001930 : GAAAGAGGGCGAGTTTTCCACCTGCTTCACGGAGCTGCAGCGAGACTTCCTGAGGAACCG
---------+---------+---------+---------+---------+---------+ 699
TES01_0075_B06.b : GAAAGAGGGCGAGTTTTCCACCTGCTTCACGGAGCTGCAGCGAGACTTCCTGAGGAACCG
AMP01_0025_C08.b : GAAAGAGGGCGAGTTTTCCACCTGCTTCACGGAGCTGCAGCGAGACTTCCCGAGGAACCG
THY01_0057_B01.b : GAAAGAGGGCGAGTTTTCCACCTGCTTCACGGAGCTGCAGCGAGACTTCCTGAGGAACCG
20080515C-001930 : ACCAACCAAGCTGAAGAGCCTCATCCGCCTTGTCAAGCACTGGTACCAGACGTGTAAGAA
---------+---------+---------+---------+---------+---------+ 759
TES01_0075_B06.b : ACAACCCAAGCTGAAGAGCCTCATCCCGCTTGTCAAGCACTGGTCCCAAAC*TGTATAAA
AMP01_0025_C08.b : ACCCACCAAGCTGAAGAGCCTCATCCGCCTTGTCAAGCACTGGTACCAGACGTGTAAGAA
THY01_0057_B01.b : ACCAACCAAGCTGAAGAGCCTCATCCGCCTTGTCAAGCACTGGTACCAGACGTGTAAGAA
20080515C-001930 : GCCTCATGGAAATAAACTGCCCCCACAGTATGCCCT*GGAGCTCCTGACAGTCTATGCAT
---------+---------+---------+---------+---------+---------+ 818
TES01_0075_B06.b : G*CTCATGGAAATAAACTGCCCCCACAGTATGCCCTTGGACCTCCTGACAGTCTTTGCTT
AMP01_0025_C08.b : GCCTCATGGAAATAAACTGCCCCCACAGTATGCCCT*GGACCTCCTGACAGTCTATGCAT
THY01_0057_B01.b : GCCTCATGGAAATAAACTGCCCCCACAGTATGCCCT*GGAGCTCCTGACAGTCTATGCAT
20080515C-001930 : GGGAGCAAGGAAGCGGGAAAACAGATTTTAGCACAGCTCAGGGATTTCAGACTGTTTTGG
---------+---------+---------+---------+---------+---------+ 878
TES01_0075_B06.b : GGGAACaagggaccggaaaaccaaatttaccccgctccaggaattccaactggtttggaa
AMP01_0025_C08.b : GGGAACAGGGAAGCGGGAAAAC*GATTTTAACACAGCTCAGGGAATTCAAACTGTTTTga
THY01_0057_B01.b : GGGAGCAAGGAAGCGGGAAAACAGATTTTAGCACAGCTCAGGGATTTCAGACTGTTTTGG
20080515C-001930 : AATTAGTCCTAAAGCATAAGAAGCTTTGCATCTTCTGGGAAGCATATTATAACTTTTAAA
---------+---------+---------+---------+---------+---------+ 938
TES01_0075_B06.b : tatccctaaaccataaaaagcttttcatcttccgggaaacctttttataactttaaaacc
AMP01_0025_C08.b : aataatcctaaaccatagaagctttgcatcctctgggagcatattaaactttaaaaccct
THY01_0057_B01.b : AATTAGTCCTAAAGCATAAGAAGCTTTGCATCTTCTGGGAAGCATATTATAACTTTTAAA
20080515C-001930 : ACCCTGTCGTTGGACGATATCTGACTGAGCAACTCAAGAAACCCAGGCCTGTGATTCTGG
---------+---------+---------+---------+---------+---------+ 998
TES01_0075_B06.b : ccgtccttggacaatttctgactgaccacccccaaaaacccgggcccgggaatttggaac
AMP01_0025_C08.b : gtcgttgggagaaactgactgaacactcaaaaacccagcccggaattcggacccggctac
THY01_0057_B01.b : ACCCTGTCGTTGGACGATATCTGACTGAGCAACTCAAGAAACCCAGGCCTGTGATTCTGG
20080515C-001930 : ACCCGGC.....................................................
---------+---------+---------+---------+---------+---------+ 1005
TES01_0075_B06.b : ccggttaacccttaaggcaaatgtgtgggggggaaaaaaataaaattgggaaacctttgg
AMP01_0025_C08.b : cctaagcaacttttgtgtgggaaaccatacactggcccccctgtaaaagggccaaaatgg
THY01_0057_B01.b : ACCCGGCtgaccttacaggcaacgttggtgggtggaacccatacagctggcagcagctgg
20080515C-001930 : ............................................................
---------+---------+---------+---------+---------+---------+ 1005
TES01_0075_B06.b : aaaaaggccccacactcggcggaaaatatcccggcttttttaaaaagagaacagcccccc
AMP01_0025_C08.b : ctaaatatccgcttttaaaagaaaaggtcccggggatccgaagggtccccaaggcagccc
THY01_0057_B01.b : tagaaggggcactaatcttggctgaattatccggtgcttttttaaatggaaccggttccc
20080515C-001930 : ............................................................
---------+---------+---------+---------+---------+---------+ 1005
TES01_0075_B06.b : gggggaacccggaaaggggtcccccgaggaaaaagccccctcccggaggaggaaatattt
AMP01_0025_C08.b : ccccat
THY01_0057_B01.b : gggtgggaatccggg
20080515C-001930 : ............................................................
---------+---------+---------+---------+---------+---------+ 1005
TES01_0075_B06.b : tatgggcccaaaaaactttaaaaagaggggcccgtgagacccgggaacacccccccttcc
AMP01_0025_C08.b :
THY01_0057_B01.b :
20080515C-001930 : ............................................................
---------+---------+---------+---------+---------+---------+ 1005
TES01_0075_B06.b : tatgggggggggggccgaacctttctccttaggcccattttgtgttacaaaacctcacaa
AMP01_0025_C08.b :
THY01_0057_B01.b :
20080515C-001930 : ............................................................
---------+---------+---------+---------+---------+---------+ 1005
TES01_0075_B06.b : aaaatgtttttccccggggtttttttgtgc
AMP01_0025_C08.b :
THY01_0057_B01.b :
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